| mature miRNA: CGCGAGGTACCGATACCTCGA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|66922178|gb|CX109026.1|CX109026 RECm0076 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl CGCGAGGTACCGATACCTCGA EST sequence (targeted fragment marked with yellow): TTAATTCAACAACTCAAGGTTTAAATAACCAGGTAAAAACTTCTTTAGGTGGAATGTAGAATCCAGACCATGACCACGAAAACTGCGAACATTCATCACAAATGTGACCAGAGTACCAAGCAAAAAGCACGACCATACTGGAATACATGTCCTTTAATCTAGCGATGATAAGCATGGTAGCGAATATGGATAGTAGCAACAATAAGTAACACTCTAAGTGGCCTTGTCGGCCTTGGCAGCGGTAGCGGCGGCCTGGCCTCTGAGACGACCAGTCCTCCTTGCAGCGATGAGACCAACCTTCTGGCCAGGAGGTGCATCACGGCGGACGGTGGAGGCGTGACCAATGTGCTGGTGGTTACCTCCTCCGTGGGGATGCTCAACGGGGTTCATGGCCACACCACGCACCTTAGGCCAGCAGTTCCTCTTCACGCGGTACTTGTGGTAGGCGTTTCCAGCCTTGAGCATCGGCTTCTCAGTCCTGCCACCACCAGCAACCTGACCGATCATGGCACGGCAGCTGCTGGGGACAATCTTCTTGGCACCAGAGGGGAGCTTGATCCTGGATGTGCCGTTGTCGGGGTTGTGGCTGATGACGATGGCGTAGTCGCCGGACGCCCTGGCGAAGACGCCGCGGTCGCCGACGTGGTGCTCGACGTTGCAGACCACGGCGCCCTCGGGTACCGACCGGATCGGGAGCACGTTGCCGATGCAGAGCGTGGCGCGGCGGCCGCAGTAGACGAACTGCCCCGTGTACATCCCCTCCGCCGCGACGAACAGCTCCTTCTGGTGCTTGTACCGGAACGGGTGGCGGAACGTCACCTTGGCGAGCGGCGCGCCGCGGCCGGGGTCGTGGATGATGTCGGTGACGACGCCCTTGAGGTAGCCGTTGCGCTCGCCGAAGTCGAGGGAGCGGAACCTCGCGGGGCCCTTGCGGTGGTGGGTGTGGGACTTGAACACGGAGCCCGCACCCTTACGCTGCGCGCGGATCACGCGACCCATCTCCTCGTCGGCGGCGAGACGGCGGTGAGGTTGGTTTGGATCTGCAGCGAGAGAGAGATCGAGAATCGCTTTTGCTTTCTTTTCCTCTGGCTACTAAGATGTTTCAGTTCGCCAGGTTGTCTCTTGCCTGCTCATGGATTCAGCAGGCAGTTCAAAAGGTTGACCTATTTGGGAATCTCCGGATCTATGCTTATTTTCAACTCCCCGAAGCATTTCGTCGCTTGCTACGCCCTTCCTCGTCTCTGGTACCTAGTATCCACCGCAAGCCGACGCGTGGTCACCCGGATTCCGCCGACCTCGCAGTCGT | |||||||||
gi|86597402|gb|CI282526.1|CI282526 CI282526 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo CGCGAGGTACCGATACCTCGA EST sequence (targeted fragment marked with yellow): TTTTTATATGAAGTTTTTCTTCGGTCAACAAAAAGTATCTCGAGGTATCGGTACCTCGCGGTACAAAATCATTTCCGATCGTTGGATCTAACGATGCCCAACCCACCCAGCTAGATCCAACGATCGGAAACAATTTGGTACCGTGAGGTATCGGTACCTCGAGTTACTTTTTGTTGGACCGGAGTAAATCTCATCTCCTATATACAAATAACACACAAAGACGAACAAATTAACGTCCATATATCGATCGGTCCAAAGAATGACCCCCGATCGACCTATCTACACGCAAGAACACCTCAAATCATCATCAACGATATGATGTGGTATCAACGATCAGTAGCCGGCGATCTCCGAGCTCTGCTGGTCGCCGTGCTTCTTGCCACCGGACTTCTTCTGCTGGTACTTGTCCTTGATCCACTGGAACCCATGCGCCGTCCCCTCCTTCACCTTCCTCAGCCCGCTCGCCGCCGCCGCCTTCGTCTTCTCCATACCCTTCTTCCCTCCTCCTCCTCCTCCGCCGCCGCTCCTCTTCCCCGACGACGAC | |||||||||
gi|88270682|gb|CI385940.1|CI385940 CI385940 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone CGCGAGGTACCGATACCTCGA EST sequence (targeted fragment marked with yellow): GGGCTCTTCAAAGATAGATAGTTACCATTTTCAGAAATACATGTCCTACAAGCGATTTTGCTTGTTCCAATTACAAAATCCAGACAGAGAAATATCAAAAGCAATACCAGCTTAATCAAAACAAATGATACACAGAGCGGATTATGCATGTACCCTCCAGCAGCAATAACAACAGATCAAATACGGTTCTCCGTATCACTTCATCCTCATGTAATAATTAAGAGATTTGCTTCGGTACAACAAAAAGTATCTCGAGGTATCGGTACCTCACGGTACTAAATCATTCAACGGTGCAATCCATCCACTGGCCATGCCTGGAGCTGAACGTTCCTCCACCGTGCCGTATCGCAAATTTCTTCATGATCATCTGCACGCAGGAATTCCACTCCGAGGCCATCTGCTTGACTGACATGGACGGGGGGAGCTCACGCAGCGCGCAGTGAAAAG | |||||||||
gi|88245701|gb|CI245550.1|CI245550 CI245550 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat CGCGAGGTACCGATACCTCGA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTGGAAACAAATCCCAATCTCTTTTATATCTACAAGAGAAAAAAAATAACAGAATCAAACAAACTACGAACAAGAGCACCCATCTCCTATATGAGTTTTTCTTCGGTCCAACAAAAAGTATCTCGAGGTATCGGTACCTCGCGGTACAAAATCATTTCCGATCGTTGGATCTAACGATGCCCAACCCACCCAGCTAGATCCAACGATCGGAAACAATTTGGTACCGTGAGGTATCGGTACCTCGAGTTACTTTTTGTTGGACCGGAGTAAATCTCATCTCCTATATACAAATAACACACAAAGACGAACAAATTAACGTCCATATATCGATCGGTCCAAAGAATGACCCCCGATCGACCTATCTACACGCAAGAACACCTCAAATCATCATCAACGATATGATGTGGTATCAACGATCAGTAGCCGGCGATCTCCGAGCTCTGCTGGTCGCCGTGCTTCTTGCCACCGGACTTCTTCTGCTGGTACTTG | |||||||||
gi|88240102|gb|CI239264.1|CI239264 CI239264 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat CGCGAGGTACCGATACCTCGA EST sequence (targeted fragment marked with yellow): TTTTTTTTTCAACAAATATACCTCAGAATGAAGTTTTGAGGGACTAAATTATATGTAGGGCGGTAGATTGATAATGGTTTATAGAGATTTGCTCCGATCAAATAAAAAATATCTTGAGGTATCGGTACCTCACGGTACTAAATCTTTTCTAATTGTTGGATTTGACGATACCTATCCTACCGAGCTATATCTAGTGATCAGAGATGATTTGGTACCGTGAGGTACCGGTACTTCGAGATATTTTTTTGCTAGACTGGAGCAAATATCTGGTTTATATGATCGGTAACGAGAGCAAAGCAAAATATGTTTTAGGAATTCTGGATTCATTAGCCTAGCTGCCTAGGCGGTGATGGTGCGGCCACCGTCGACGCAGATGACCTGCCCGGTGATGTACGGCGCCGCCGGCATGCAGAGGAACGCGACGAGCGACGCCACCTCCTCGGGCTCGCCGATGCGGCCCATGACGACCCGCGCCGCCTCCCTCTCCTCCATCGCCCGCGCCGCCCCCGGCTCCAGCGCCACGCCGCTGCTGCCGGCGATATCGGTCC | |||||||||
gi|88245701|gb|CI245550.1|CI245550 CI245550 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat CGCGAGGTACCGATACCTCGA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTGGAAACAAATCCCAATCTCTTTTATATCTACAAGAGAAAAAAAATAACAGAATCAAACAAACTACGAACAAGAGCACCCATCTCCTATATGAGTTTTTCTTCGGTCCAACAAAAAGTATCTCGAGGTATCGGTACCTCGCGGTACAAAATCATTTCCGATCGTTGGATCTAACGATGCCCAACCCACCCAGCTAGATCCAACGATCGGAAACAATTTGGTACCGTGAGGTATCGGTACCTCGAGTTACTTTTTGTTGGACCGGAGTAAATCTCATCTCCTATATACAAATAACACACAAAGACGAACAAATTAACGTCCATATATCGATCGGTCCAAAGAATGACCCCCGATCGACCTATCTACACGCAAGAACACCTCAAATCATCATCAACGATATGATGTGGTATCAACGATCAGTAGCCGGCGATCTCCGAGCTCTGCTGGTCGCCGTGCTTCTTGCCACCGGACTTCTTCTGCTGGTACTTG | |||||||||