| mature miRNA: CGCTATCCATCCTGAGTTTC species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|45438745|gb|CF932164.1|CF932164 P1-C2 A suppression subtractive hybridization cDNA library from bacterial-blight-resistant co CGCTATCCATCCTGAGTTTC EST sequence (targeted fragment marked with yellow): ACAAAAGTAGGCGATTTTCAGGACCAAAACAATCTGTTCATCATGCCCTTTTCCCTGAAGTTTAGGATCGATAGCTTGGATGGCGCTGTCCGAAACCATGATGTTTCTCATCCATTTCACCAAGCTCATTTCATCAGTGAATTGAAAGAACTCATCGGATGGAAGCTTTCCCATCACCAGAACACCCAGTATAACCCCGACTGCTATAGATATCGCACTTATCAGTGAACTTGAGTGTTTGATGATACTCCGGTGCTATATATCCCACTGTTCCGGCCACATTTGAAGTGGTTACATGGGTGTTAGCATCAGGCATGGCTTTGGCAAGCCCGAAATCCGCAATTCTAGCTTCCATATCATCATCCAGAAGGATGTTTCCAGGTTTCAGATCTCTGTGAATGATCCGGGGACTATGATGCATGTGAAGATATTCCAGCCCTGCCGCAATTCCGGCGGCGATCTTGTGGCGAGCGGGCCAATCAAGCTCCCTTGT | |||||||||
gi|164296092|gb|ES829656.1|ES829656 UFL_176_26 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence CGCTATCCATCCTGAGTTTC EST sequence (targeted fragment marked with yellow): GGCACGAGCTCACCAACATTGGGGGTTTTTTTTCTCTCCTCTTTTTTATTTAATTCCAGTATGGAAGAATCTGTTAAGCTCAGGAGGGATAGCGCCATGGATGATCCATCTTTCAAGCTTTCATGCATGTATGTTATTTGATCCTCATATAGCGCTATCCATCCTGAGTTTCATCGGTTCTTCTTGCTTGCTGTCGCTCCGTTAGCCGAAAAAGGAACACACAAAAATCTTGTGGGTACGTACCGTTACTGCATTTTTCTCCTCCATTTTTTATAAATATTTCCTCGTTTGTGTGTGTGTGTTTTAACATATATTGTTGAAATCAAAAGGGTTTTGGTTGGTTTTCTCTTTCCCAATTCTGGGATTTTTAAAGAAAATACAATTACAGGTGTTGGGTAAGTTTTGCAGGCTCCACGATTCCACTAGAAAGGGGGAGAAACAGTTGAAGAAAATTCCCCTTTGTCGTATAAATTGGAGAAACAAACAAATAAGGGGCCTTATATTTGTGGACATAATTAGTTTGGTCCTCTAATGCATATGCAGAAGTGATGCTTCTGCTTGTATTTGGTGTTATGGAGAGGCACTGTCGCTGTTATAAATTAAGTTATAAACACTATTATGTGCATGAAATTATTGAAAGGATGTAATTTGTCTTATTGTAGCAGTGGACATTGAATGAGAGTGAAGAGTATGGCATGTGCTTAGGTGCAGCCTGCAGGTCTCCTTTTGCTTTTACTAGCCTTTACCATGCTCCAACTAATGGGGGTTGACATGATATCCCGATTCATAATAATAATAATATTATTGAANTACCTCAACCTGGTGTTATTTAATAAGGTGGAATATATATATATATAGACGCTACGGACCATTTTTCAATGGATTTGAAGAACGCTTTGAATGCATTATGGCGCAGTCATGGTAAAAGGTTCCCATTTCCACTCCACTTGCTGGGTTTTAATAATCGTGAAGATTGGTTACGATCAGCATGAACGGTGAATTTAGCCCTCCTTTTATCCATTAATTTNTTAAGGTTGGGGCCTTTTTGTTTGTGAAAATTGGGGGGTTTCCGAATATTTGGTCTTAAAAAAGAAAAAGAACTAAATCGGCCAGTTTCTCCTTCAAAAAAAAAAATAAAAAAAAAATTCCAAATTTTTTAAAAGGGCGGGGC | |||||||||
gi|72279163|gb|DT051895.1|DT051895 COT_ER_F09 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' si CGCTATCCATCCTGAGTTTC EST sequence (targeted fragment marked with yellow): AGGTGCACAACCCAAAAGCCAGATAGATTATATTTCTATACAAGCATTACAATTACAGTTACAAAGCATAAGGATCATATGCTGGAAAGAGAAAACACGTTACATAAACTAAAAATTATTCAAATATTCTTGATCTTCTATGCNATCGTCATGATCTGACATTAATTATGGGCTATGACCTTCGCTCTTGATTGGGGACAACATGCATCTCACATCCTTGCTANTAGGCCTCTCCTTTGGATACATCCAAAGTACAAAAGTAGGCNATATTTCAGGACACAAGAACAATCTAGNTATCATCATGCCCTATTTCCCTGAAGTTTAGGATCGATAGCTTGGATGGCGTNAGTCCGAAACCCATGATGTTTGCTCNATCCATTTCACCAAGCNTCATTTCATCAGAGAATTGAAAGAACCTACNATCGGATGGAAGCGTTTCCCATCACCAGAACTCACCCAGGTATAACCCCGANAGCCTTTAGGATATTGCGACGTTATCNAGATNCAACTTGAGATGTATCGAATGACTACTCCGGTGGTATATCATCCC | |||||||||
gi|109887485|gb|DW516454.1|DW516454 GH_TMIRS_201_G04_R Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc CGCTATCCATCCTGAGTTTC EST sequence (targeted fragment marked with yellow): CGAGAAAGAAGAGCTTTTATCATTATCACATTCAATAGTAAAGTAAAATCATACATGCTGTAGAAAAATGACAAATTTCATGTTCTCGTTTCTTCAATAAGAAAAAAAAATTAATAATAAGAAGAAAAAAACATAACAAAACTCCTGTTCTGGTTTCTCAAGTTATGCATTAGGAGGTTTGTACAACTTTTCAACCATCTTCCTATATTCTTCTTGGTTGCTCCAAAGTTGAGCTGCGTGGGTGTTCAAAGGTGAGCTAATGTTGGGTTCTCCAAGCAGACTCTGGATGGATAGCAGTATGGTTCTTACATCATAAGCAGATGACCATTTATCCTGAAGAATGTCCAAGCAAATGTTGCCAAAGACATCAACATTTGGATGGAAACAGGCAGTCTCAAACTTAACCTTTGGAGGCTTAAAAGGGTAATCATTGGAGAAGGAAAGAGATAGCTTGTATTCTGTTCCTTCAAACACTGTGTCTTTGCTTCCTGTAATTGTTCCTTTCCAGCAAAATATGTTGTCTTCTTCTGGGAATGCTGATATTCCAGAATCTCCACCCATCATCAAAGCCATCAACTCGGATTGCAACCTTTTAAGAACAGATTGAGCATCAGCAGTCTTAGCAGTGGGGGCAGGATGTTTCGATCCAGTGCTAGTGGCCACTGGTGTGTTTTCTTGGTACCCATTAACGGTTGCCATTACTTTCTTTTGCTTACTATTGATTCAACAAAAAAATAACCCAAAAACCCCAACTCAAA | |||||||||
gi|109836460|gb|DW235021.1|DW235021 GH_RTFR_29R_F09_InvR_14Sep04_069_R Root (free) - 7-10 weeks after planting Gossypium hirsutu CGCTATCCATCCTGAGTTTC EST sequence (targeted fragment marked with yellow): AATTTAGGTGCACAACCCAAAAGCCAGATAGATTATATTTCTTACAAGCATTACAATTACAGTTACAAAGCATAAGGATCATATGTTGGAAAGAGAAAACATGTTGCATAAACTAAAATTTATTCAAATATTCTTGATCTTCTTACATCATCGTGATCTGACATTAATTATTGGCTTGACTCTTCGCTCTTGATTTGAGACAACATGCATCTCACATCCTTGCTACTAGGCCTCTCCTTTGGATCATCCAAAGTACAAAAGTAGGCGATTTTCAGGACCAAAACAATCTGTTCATCATGCCCTTTTCCCTGAAGTTTAGGATTGATAGCTTGGATGGCGTTGTTCGAAACCATGATGTTTCTCATCCATTTCACCAAGCTCATTTCATCAGTGAATTGAAAGAACTCATCGGATGGAAGCTTTCCCATCACTAGAACACCCAGTATAACCCCGAAGCTATAGATATCGCACTTATCAGTAAAATTGAGTGTTTGATGATACTCCGGTGCTATATATCCCACTGTTCCGGCCACATTTGAAGTGGTTACATGGGTGTTTGCATCGGGCATGGCTTTGGCAAGCCCGAAATCCGCAATTCTAGCTTCCATATCATCATCCAGAAGAATGTTTCCAGGTTTCAGATCTCTGTGAATGATACGGGGACTATGATGCATGTGGAGATATTCCAGCCCTGCCGCAATTCCGGCGGCGATCTTGTGGCGAGCGGGCCAATCAAGCTCCCTTG | |||||||||
gi|72280454|gb|DT052537.1|DT052537 COT_FD_E12 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' si CGCTATCCATCCTGAGTTTC EST sequence (targeted fragment marked with yellow): AGGTGCACAACCCAAAAAGCCAGATAGATTATATTTTCTTACAAGCATTACAATTACAGTTACAAAGCATAACGGATCATACTGCTGGAAAAGAGAAAACACGTTACATAAACCTAAAAATTATTCAAATATTCTTGATCCTTCTTGCATCGTCATGACTCTGACATTTAATTATTGGCTTGACCCTTCGCTCTTGATTTGGGACAACATGCATCTCACATCCTTGCTACTAGGCCTCTCCTTTGGATCATCCAAAGTACAAAAGTAGGCGAATTTTCAGGACCAAATACAATCTGTTCATCATGCCCTTTTCCCTGAAGTTTAGGATCGATAGCTTGGATGGCGTTGTCCGAAACCATGATGTTTCTCATCCATTTCACCAAGCTCATGTGTCATCAGGTGAATTGAAAGGAACTCATCGGCATGGGAAGCTTTCCCATCACCGAGGAACACCCAGGTATAACCCCGGAAGCTATAGATATCGCACTTATCAGTGAACTTGAATGTNTGATGATACTCCGGTGCTATATATCCCATTGTTCCGGCACAT | |||||||||
gi|109889196|gb|DW518164.1|DW518164 GH_TMIRS_218_D12_R Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc CGCTATCCATCCTGAGTTTC EST sequence (targeted fragment marked with yellow): ATTCAATAATATTATTATTATTATGAATCGGAATATCATGTCAACCCCCATTAGTTGGAGCATGGTAAAGGCTAGTAAAAGCAAAAGGAGACCTGCAGGCTGCACCTAAGCACATGCCATACTCTTCACTCTCATTCAATGTCCACTGCTACAATAAGACAAATTACATCCTTTCAATAATTTCATGCACATAATAGTGTTTATAACTTAATTTATAACAGCGACAGTGCCTCTCCATAACACCAAATACAAGCAGAAGCATCACTTCCGCATATGCATTAGAGGACCAAACTAATTATGTCCACAAATATAAGGCCCCTTATTTGTTTGTTTCTCCAATTTATACGACAAAGGGGAATTTTCTTCAACTGTTTCTCCCCCTTTCTAGTGGAATCGTGGAGCCTGCAAAACTTACCCAACACCTGTAATTGTATTTTCTTTAAAAATCCCAGAATTGGGAAAGAGAAAACCAACCAAAACCCTTTTGATTTCAACAATATATGTTAAAACACACACACACAAACGAGGAAATATTTATAAAAAATGGAGGAGAAAAATGCAGTAACGGTACGTACCCACAAGATTTTTGTGTGTTCCTTTTTCGGCTAACGGAGCGACAGCAAGCAAGAAGAACCGATGAAACTCAGGATGGATAGCGCTATATGAGGATCAAATAACATACATGCATGAAAGCTTGAAAGATGGATCATCCATGGCGCTATCCCTCCTGAGCTTAACAGATTCTTCCATACTGGAATTAAATAAAAAAGAGGAGAGAAAAAAAAACCCCAATGTTGGTG | |||||||||