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mature miRNA: CGCTATCTATCCTGAGCTCCA
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|88264352|gb|CI368126.1|CI368126 CI368126 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone 

CGCTATCTATCCTGAGCTCCA
|||| |||||||. || ||||
GCGACAGATAGGGGTCCAGGT

EST sequence (targeted fragment marked with yellow):
ACCGTTGCAACACACATGTATATTGTGTAATGGAATGGAATGGGTCACTGACTCCTATCCAAGAACGAGCCATTTGCATTTTGCAATAAAGCATTACTGTACTTGTACACAGGGACAAGGGTAACGTTCTCACTCTGATGGTTGGACAAAAAAGTTATACTAGTATACAATATGCCAACTATGGATTGTGCTTGAATGAACCTAAAACGACGTACTACAGAGATAGAAATCATCACCTTGACATACTAATGGACCTGGGGATAGACAGCGATCGGACCTCCGGCGCCGAACTTGGGAACATCACGTTGAGCGTGTGAATCAGGACGTCAGCCTTGGATGGTATTTCGTTGAGCAGGAACTGCTGCAGGATCGGCTCTTGAACACTCTAGCACTGAGCTCAACTGCCGCA