| mature miRNA: CGGAATATACCGACGGAATTC species: Brassica oleracea database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|308650236|gb|DK456540.1|DK456540 DK456540 full-length kale cDNA library (leaves) Brassica oleracea var. acephala cDNA clone K CGGAATATACCGACGGAATTC EST sequence (targeted fragment marked with yellow): GGTACGGGAACGAACTACTATGGGCACCTTCGTCGCCACAAAAACTGAAGGTTTGTTATATCAAGTACCCCCGGGTAAGGAACAAAGATGATCAATGGGTTACTGTTACAAGACTCAACCCGAGAGGCCGAGTTCAGGGAAGTTCTGAGCTGGAAGACCCACTACAACCAAGCACATCCGGCTATTTAAGTGCAGCAGAAGATTTAGCAGGAGTTGGCCTTGTAGTCGATTTAACCGACTTCGGAGAGGAAGTCGTCGTTCACGTAGAGGATGAACCAGTGATTGGAGAGTTTCACCAAGATCTAGATTCAGATTTATCTGGTGATGATGACTCGGAAACAGACTAGCATCGACTTTTTTTTTTTTTTAATAGAAATACCGAGGAAATTCCGAGGGAAGATAGGTTTTCCTCGGAATAGACCTTGTCGATTTAGGGATTTGATTATAGAGTCTTTTTCCCTCGGAATTTCCTCGGAATATTCCGACGGAATTCCGAGGAAGATAAGGGTTTCCTCGGAATTCCCTCGGAATATTTCGAGGAAATTCCGAGGAACTTGGGTTTTTAACCAAAACAACGTTTGCGGATTGAAAACGAGGAAAAACATATAAAAAATAAGAATT | |||||||||
gi|112354875|gb|AM390854.1|AM390854 AM390854 AAFC_WHRI_BoE02a Brassica oleracea var. alboglabra cDNA clone AAFC_WHRI_BoE02a014E0 CGGAATATACCGACGGAATTC EST sequence (targeted fragment marked with yellow): TTCGTCGGAAATTCGTCGGAAAATTCTGACGGAATACCGACGACTGTACTGTTAATCGGAATGTCGTCGAAAGTTCGTCGGTATATTCCGACGCCCCNNNTTTCGTC | |||||||||
gi|150132205|gb|EE533177.1|EE533177 46RDOAG_UP_041_B05_27DEC2004_045 O. Alba 46RDOAG Brassica oleracea cDNA 5', mRNA sequence CGGAATATACCGACGGAATTC EST sequence (targeted fragment marked with yellow): GACACAACAAAATATACAATCCTCCATATTTCTTTTATCTTTCGAATCTGAGAGTATACGCAAATCTAGTTTCGCCAGACTTCTGATAGAATGACGCAGAGGCGGACCTATTTGATGAAAAGGTGGCACTACAAAAAAAACAACGACATACCGAGGGAAAAAATCGTCGGTTATTCCGACGACATACCGACGAAACAAGTCCTCGGAAATAACTCCTCGGAAATTCATTATTCCTCGGAAATCCCTCGGAAATTTTCGACGGAATTCCGAGGAAACTCCGAGGACCACCAGTTCGTCGGAAAGCTCCTCGGAATATACCGAGGGAGAACTTCCTCGGGATATTTCGATGGACTTTCCGATGGTCCAATCCTCGGAAGTTCCGACGGAAAATTCCGAGGAATGAGTCCCTCGGTATATTCCGAGGAAGAAGTCCCTCGAAAAATTCCGAGGAATGAGTCCCTCGAAAAATTCCGAGGAATGAATCCCTCGGTATATTCCGAGGA | |||||||||
gi|150132205|gb|EE533177.1|EE533177 46RDOAG_UP_041_B05_27DEC2004_045 O. Alba 46RDOAG Brassica oleracea cDNA 5', mRNA sequence CGGAATATACCGACGGAATTC EST sequence (targeted fragment marked with yellow): GACACAACAAAATATACAATCCTCCATATTTCTTTTATCTTTCGAATCTGAGAGTATACGCAAATCTAGTTTCGCCAGACTTCTGATAGAATGACGCAGAGGCGGACCTATTTGATGAAAAGGTGGCACTACAAAAAAAACAACGACATACCGAGGGAAAAAATCGTCGGTTATTCCGACGACATACCGACGAAACAAGTCCTCGGAAATAACTCCTCGGAAATTCATTATTCCTCGGAAATCCCTCGGAAATTTTCGACGGAATTCCGAGGAAACTCCGAGGACCACCAGTTCGTCGGAAAGCTCCTCGGAATATACCGAGGGAGAACTTCCTCGGGATATTTCGATGGACTTTCCGATGGTCCAATCCTCGGAAGTTCCGACGGAAAATTCCGAGGAATGAGTCCCTCGGTATATTCCGAGGAAGAAGTCCCTCGAAAAATTCCGAGGAATGAGTCCCTCGAAAAATTCCGAGGAATGAATCCCTCGGTATATTCCGAGGA | |||||||||
gi|122039896|gb|EH428761.1|EH428761 OL8800R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabr CGGAATATACCGACGGAATTC EST sequence (targeted fragment marked with yellow): GGACGCGTCCGCAAAGAATCTTCAATGGTATGCATTACAATTGTATAAGAAATGAAATACGGCAAAAAAAAATTGATGTTTTGAAACCCCAAACACTAGTTCCTCGGTATTTCCTCGGAATATTCCGAGGAAATATTTCGAGAAAATTGAAATTAGAATTCCGACGGAATTCCGACGGATAATATCCGTCGGACCCTAGGTTTTATAACCACGAGCCACTTCTTCTTCCCCATTTCTTTCTTCTTCCTCTGCGCAAATCCTCTCTTCTCTCCGGCGATTTCCCCCTGAAATCCGACGATATCTCCGGCGATCTTCCTCTTTTCTTACACAAATCATCTTGATTGTGACAGGGAGACGCACAGCTGTCTGTCAAAAAGTTGATGCAGGCACCAAAGGTTCAATCTGCGGATATCACAAGCAAGGAATACTACAAGACCCATTCAAAGTTTCCTGGCCACTTCCCATCAATGTGAACAAGGATAACGTTTCTGCTGAATTTATGGATGGGCTTCTGAGAATAGTTATTCCAAAGCTTTGAGTGATCACTATACGTAAACGGTAAACAGTGTGTGTATAAAATTGTGTGGAAGAAGAGAAAGAAAAAGCAAAAACTATGGAGTGATATGTAAAATAGTATGGTGTTTCTTTATTTATACAGATTTCAGACAGGCATGCTCAGTTAATAGAGTTAGCCATGTAAACAATCCATAAGTAT | |||||||||
gi|113705111|gb|AM394894.1|AM394894 AM394894 subtracted bud Brassica oleracea var. italica cDNA clone AAFC_WHRI_Zennia013G11_M13 CGGAATATACCGACGGAATTC EST sequence (targeted fragment marked with yellow): GCGGGTTTCCTCGGAATTTCCTCGGATTATTCCGAGGGAACTCCGACGAAACCCTCTTCTTCCTCGAAATTTCCTCGGAATATTCCGAGGAAATTCCGACGAACTAGTGTTTGGGGTTTCAAAACGTAATTTTTTTTAAAAAAACGCATCGATCGATGCGTTTTTGAACAAAAACAAATCGATCGATTACTAAGATGGCCCGGGCCGTAAGATTGTGATCGATCGATGAGAGTATCCCATCGATCTATCGGCAATCTGAATTGTTCCTCGGAATTTCCTCGGAAAATCTTGTATGTTTTTTTAAAAATGCATCGATCGATGCGTTATAGAACAAAAACGCATCGATCGATTACTAGGATGGACCGGGCCGTANGATTNNGATCGATCGATGAGATTAGCCCATCGATCTATCGACAAT | |||||||||
gi|308621477|gb|DK540528.1|DK540528 DK540528 full-length kale cDNA library (seedlings) Brassica oleracea var. acephala cDNA clon CGGAATATACCGACGGAATTC EST sequence (targeted fragment marked with yellow): AGGGTAAGCAACAAATTTTTGACTTCATAATCAGTCTAAGACACTCAATAAGGGTTATATAAGTGTTATTCAAACCGCAAAACGTTGTTTTTGGTTTAAAAACCCTACTTCCTCGGAATTTCCTCGGAATATTCCGAGGGAATTCCGAGGAAAAATACTCTATAATCAAATCCCTAAATCGACAAGGTTTATTCCGAGGAAATTCCGAGAAAAACCTATCTTCCCTCGGAATTTCCTCGGTATTTCTATTAAAAAAAAAAAAGTCGATGCTAGTCTGTTTCCGAGTCATCATCACCAGATGAATCTGAATCTGGATCTTGGTGAAACTCTCCAATCACTGGTTCATCCTCTACGTGAACGACGGTTTCCTCTCCGAAGTCGGTTAAATCGACTACAAGGCCAACTCCAGCTAAATCTTCTGCTGCACTTAAGTTGCCGGATGTGCTTGGTTGTAGTGGGTCTTCCAGCTCAGAACTTCCCTGAACTCGGCCTCTCGGGTTGAGTCTTGTAACAGTAACCCATGGATCATCTCTGTTCCTTACCCGGGGGTACTTGATATAAAAAACCTGATCGGCCTGAGAAGCAAGAATGAAAGGATCATAATATTGCAGATTTCGCCTTGAATTTACTGATGTAACACCAAATGCATCTGTTCTCACACCTCGATCTAGAGTGTTGTCGTGCCAATCACAATAGAAAACAGTACAGCGCAATCCAACCATGCCCAAATACTTGATTTCCAAAATCTCATGTATGTGTCCATAGTATACATCATCTCCTGATGCAGAACAAACGCCAGCATCATAAGTCGTACTCGAACGTCTCCCTCTTCTGAGTTCTGAATG | |||||||||
gi|95863026|gb|DY030130.1|DY030130 47RDOAH_UP_049_E07_20AUG2004_055 O. Alba 47RDOAH Brassica oleracea cDNA 5', mRNA sequence CGGAATATACCGACGGAATTC EST sequence (targeted fragment marked with yellow): GAATCAAACAAGCTAAAATCCGAGATCAACTTCCAAAACCCTAAACAATTGAAAAAAAAAAAGGTTTGGGATGATTCTTACATGATTTGGGGTTTGGGGAAGAGATAGGAGGGTGAGGAGAGGATTCGCCGGTGAAGAGAGGCCGGAATCGCCGGAGAGTCGCCGAAATCGCCGAAATCGCCGGAGAGTTTTGAGAGAGAGAGAGACCGCGGAGATTAACGAAGAAGAAAGGAGAAGCATTTTTATTTCCGCGGATTCCGACGGACACGGGTTCGTCGGTATTCCGTCGGTATATTTAAAATATACCAAATGCCGATTCGCGAAAATTTTCAAGCGGTTTGGTTCTCCCGGGCTAATTGAAATTCCGACGGAACGTGTCCGTCAGTATTTTCCGACGGACACATTCCGTCGGTATTTTCCGACGGAATTCCGACGACTTAGTGTTTAGGGGTGTTCTTTTTCAGGTTTCTAAAATGCAAAATCCAAACCTTTGATAATATATATAGTATTTTGCATAAAGATTTAACAATAAAAATGTTTTATAACACGATTTTACGCAACAATATTTTTGTAGGGGAAGCTTATATAAATATGATTGTATAAGTACATAAT | |||||||||