miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: CGGACCAGGCTTCATTCCC
species: Hordeum vulgare
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|30081935|gb|CB879949.1|CB879949 HM05A15w HM Hordeum vulgare subsp. vulgare cDNA clone HM05A15 3-PRIME, mRNA sequence

CGGACCAGGCTTCATTCCC
|.|||||||||.| .|||
GTCTGGTCCGAGGCGAGGA

EST sequence (targeted fragment marked with yellow):
AATCCAAAATGCCTTCTTTCTCTTTAACCACCATCACAGCATACCATGCCAACCAGAGGTACCAACTGCCATCATAGCAAAAACAACTACGCACTACAGTTCACCATCATCTCAGTCTCAGATTCTCAGAAAGCAGCTAACAAGGCGGACATGCAGTTCGGCGACATAGGAAAACTTATTATCATCATCATCGTCATGTGCAGCAAGGAAGTAAAGCCAGGACGGGACCGACCCATGCATCAGTCGACCACCTCCTCCGTCTTCTTGGGCTTCGACAGGAGGTACCAGCCCAGGGCGCTCAGCCCGGCAATGGTGCCTGCCAGCACCGCGTAGTTCCTGTTCTTGTCGGTCGACGTGCCTGCTGCGGATGCCGACGCAGTCGAACCGCCAACGCCAGTGTTCACGTCCCCTGCTGCAGCGCTTGCGGTGGACGGAGCTTGCTCTCCAGTGCTGGGACCCTTGCGTGCGAGCTTCTCCAGCTTCTCTTGTTCCATTTTCTTGATGTAGACGTTCTCGGCGGCCTTCTCCTCCTCGCCGAGCACTTGCCGCCGGAGGAGCGGAGCCTGGTCTGCACG



gi|8902239|gb|BE214627.1|BE214627 HV_CEb0004A04f Hordeum vulgare seedling green leaf EST library HVcDNA0005 (Blumeria challenged

CGGACCAGGCTTCATTCCC
||||||||||||| |. |
GCCTGGTCCGAAGAAGNCG

EST sequence (targeted fragment marked with yellow):
CTCGTGCCGAATTCGGCACGAGGAGAGAGAGAGAGAGAGAACTAGTTCGAGTTTTTTTTTTTTTTTTTTTAATATGAACAATGGACATCCTTTTCATGAAATGGAAATTTACATACATTTGCACAGTGTGTTAAACTAACAAATTACATACCCTTTGGTGGGCAAAATGAAGCATCAGCAAGAAGATCGTGCTATGGTACACAGATATGAAATACATCGGCGGATGGCAGGGGCCCCATGCATTCAGATGACCCAAAACCAAGCGACAAACGAACCGATGACCAGCCCAACCACAAGGAACAGCACTATGACGATCCCGGCGGTCTCGGAGTGGTGTATGGGCACGGCCTTGGGCGCCAGGATCATGAGCACGGAGGTCANGTACCCGTTGGTGAGCCCGAGAAGGCATGTCAACATGGTGACAGGGACCCTCGTGCNGAAGAAGCCTGGTCCGTGCAAGCAGCCATAGAAGAGGGGGTTAGAACANGAGCCNTNGCAAACGAACCAGCAACCCGCACATTTGAAGTTCTTCAAGAAGTANAAGGCTTGCAAGCACCTTCCAATGAGATCAACACNTTGTAAGCGCTGATTAACATGATGGGGTACAAGTCCTTGAGCGTTTTGAATGCCACGTCTTGGTGGTGGATN



gi|161423104|gb|EX583380.1|EX583380 HDP09G11T HDP Hordeum vulgare subsp. vulgare cDNA clone HDP09G11, mRNA sequence

CGGACCAGGCTTCATTCCC
||||||||||||| ||||
GCCTGGTCCGAAG-AAGGT

EST sequence (targeted fragment marked with yellow):
ATTTCCCCAGAACAGAGCAGCACTGCATGAGACCCGCACATCCATTTGGACCATACCATATGTGTTGATACAACAACGAGACGGGCATGCTCGATCGAAACCACCGTGTGGCCGTACCAACCGATACATACATTTTTCTCGTGCTAATAATCTAAACCAGCAACCTAAAGAAGAGGAGGTGACGGACGAGCACAGACAGAGACATGTGTTCTGCCTCTGCTAGCTGTTCCAGTTCTCTAGTCCAGTGCAACCTTTTCCATCCCCACTGGTGAGGTGATCTTGGGGCCTGTACGTTGATCAGCTCGGCTGCTCCAGAACGCAGGCAGGATCTTGCTGGGCTTATTACAGGGCTTTGCCTAAGTCAAGGAGATCGCTGGGCGAGCGTTAAACAGTAGAAGTGCGCCATGTGCGTGCTGTTCACCGGGTCCTCAGTGTTGATACCAGAGTTGATGACATGGAAGAAGCCTGGTCCGCCTTGTCCACGCTATCGCCTCCGAGGAAGTCAAGCACATGCTTTGCCGCCTCCCTCGGCTTCTCGACATGGGGAATGTGGCCGCACTGCCCTACCTGCCTTAAAATCGCGC



gi|30052965|gb|CB858407.1|CB858407 HI06O09w HI Hordeum vulgare subsp. vulgare cDNA clone HI06O09 3-PRIME, mRNA sequence

CGGACCAGGCTTCATTCCC
|.|||||||||.| .|||
GTCTGGTCCGAGGCGAGGA

EST sequence (targeted fragment marked with yellow):
AATCCAAAATGCCTTCTTTCTCTTTAACCACTTTCACAGCATACCATGCCAACCAGAGGTACCAACTGCCATCATAGCAAAAACAACTACGCACTACAGTTCACCATCATCTCAGTCTCAGATTCTCAGAAAGCAGCTAACAAGGCGGACATGCAGTTCGGCGACATAGGAAAACTTATTATCATCATCATCGTCATGTGCAGCAAGGAAGTAAAGCCAGGACGGGACCGACCCATGCATCAGTCGACCACCTCCTCCGTCTTCTTGGGCTTCGACAGGAGTTACCAGCCCAGGGCGCTCAGCCCGGCAATGGTGCCTGCCAGCACCGCGTAGTTCCTGTTCTTGTCGGTCGACGTGCCTGCTGCGGATGCCGACGCAGTCGAACCGCCAACGCCAGTGTTCACGTCCCCTGCTGCAGCGCTTGCGGTGGACGGAGCTTGCTCTCCAGTGCTGGGACCCTTGCGTGCGAGCTTCTCCAGCTTCTCTTGTTCCATTTTCTTGATGTAGACGTTCTCGGCGGCCTTCTCCTCCTCGCCGAGCACCTTGCCGCCGGAGGAGCGGAGCCTGGTCTGCACGAACCGCGCCGCCGCCTCCCCGGGGCCCTCGT



gi|30052929|gb|CB858372.1|CB858372 HI06M09w HI Hordeum vulgare subsp. vulgare cDNA clone HI06M09 3-PRIME, mRNA sequence

CGGACCAGGCTTCATTCCC
|.|||||||||.| .|||
GTCTGGTCCGAGGCGAGGA

EST sequence (targeted fragment marked with yellow):
AATCCAAAATGCCTTCTTTCTCTTTAACCACCATCACAGCATACCATGCCAACCAGAGGTACCAACTGCCATCATAGCAAAAACAACTACGCACTACAGTTCACCATCATCTCAGTCTCAGATTCTCAGAAAGCAGCTAACAAGGCGGACATGCAGTTCGGCGACATAGGAAAACTTATTATCATCATCATCGTCATGTGCAGCAAGGAAGTAAAGCCAGGACGGGACCGACCCATGCATCAGTCGACCACCTCCTCCGTCTTCTTGGGCTTCGACAGGAGGTACCAGCCCAGGGCGCTCAGCCCGGCAATGGTGCCTGCCAGCACCGCGTAGTTCCTGTTCTTGTCGGTCGACGTGCCTGCTGCGGATGCCGACGCAGTCGAACCGCCAACGCCAGTGTTCACGTCCCCTGCTGCAGCGCTTGCGGTGGACGGAGCTTGCTCTCCAGTGCTGGGACCCTTGCGTGCGAGCTTCTCCAGCTTCTCTTGTTCCATTTTCTTGATGTAGACGTTCTCGGCGGCCTTCTCCTCCTCGCCGAGCACCTTGCCGCCGGAGGAGCGGAGCCTGGTCTGCACG



gi|9410552|gb|BE412804.1|BE412804 MCG008.E03R990625 ITEC MCG Barley Leaf/Culm Library Hordeum vulgare cDNA clone MCG008.E03, mRN

CGGACCAGGCTTCATTCCC
..|||||||||| .||||
CTTTGGTCCGAAGAGAGGG

EST sequence (targeted fragment marked with yellow):
GGTTGTCGTCGCCTCCTCCTAAACCACTCTCCCTATCCTCGCCTCCAGAAGCTACCCACCGGCTCAAATGGCGGCGAAGGAACCGATGCGCGTGCTCGTCACCGGCGCCGCAGGACAAATCGGATATGCTCTTGTTCCCATGATTGCCAGGGGAATTATGCTTGGTGCAGACCAGCCTGTTATTCTGCATATGTTGGATATTGAATTTGCTGCTGAAGCTCTTAAAGGTGTCAAGATGGAGTTGGTCGATGCTGCATTTCCACTTCTCAAGGGAGTTGTTGCAACAACTGATCCTGTTGAGGCTTGCACTGGTGTGAATGTTGCGGTTATGGTTGGTGGATTCCCCAGGAAGGAGGGAATGGAAAGGAAGGATGTTATGACGAAGAACGTTTCAATCTACAAATCTCAAGCATCTGCTCTTGAAGCTCATGCAGCCCCCAATTGCAAGGTTCTGGTTGTTGCCAATCCAGCAAACACCAATGCTCTTATCCTGAAGGAGTTTGCTCCATCTATCCCTGAGAAGAACATCAGTTGTTTGACCCGTCTTGACCACAACAGGGCACTCGGTCAGATCTCTGAGAGACTTAATGTCCAAGTTTCTGACGTGAAGAATGCTATTATCTGGGGTAATCACTCTTCCAGTCAGTATCCTGATGTTAACCATGCCACTGTGAAGACTGCCAGTGGGAGAGAAGCCTGGTTTCGTGAACTTGTTCAAAGATGATGAATGGCTGGAATGGGGGGAAGTTCATTTGGCCCCTGGTCCAGCAANCGGTGGCGCTTNCCAAATCATCAAAGGCGAGGGNAAGCTCTTCCCAGNGGCTTCTTNTTNTTGCTGGCCAGCTTCAACTTTGGGGGATCCCCC



gi|13156806|gb|BG344477.1|BG344477 HVSMEg0009G06f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow ant

CGGACCAGGCTTCATTCCC
||||||||||| .||||
TGCTGGTCCGAAGAGAGGG

EST sequence (targeted fragment marked with yellow):
CCTATCCTCGCCTCCAGAAGCTACCCACCGGCTCAAATGGCGGCGAAGGAACCGATGCGCGTGCTCGTCACCGGCGCCGCAGGACAAATCGGATATGCTCTTGTTCCCATGATTGCCAGGGGAATTATGCTTGGTGCAGACCAGCCTGTTATTCTGCATATGTTGGATATTGAATTTGCTGCTGAAGCTCTTAAAGGTGTCAAGATGGAGTTGGTCGATGCTGCATTTCCACTTCTCAAGGGAGTTGTTGCAACAACTGATCCTGTTGAGGCTTGCACTGGTGTGAATGTTGCGGTTATGGTTGGTGGATTCCCCAGGAAGGAGGGAATGGAAAGGAAGGATGTTATGACGAAGAACGTTTCAATCTACAAATCTCAAGCATCTGCTCTTGAAGCTCATGCAGCCCCCAATTGCAAGGTTCTGGTTGTTGCCAATCCAGCAAACACCAATGCTCTTATCCTGAAGGAGTTTGCTCCATCTATCCCTGAGAAGAACATCAGTTGTTTGACCCGTCTTGACCACAACAGGGCACTCGGTCAGATCTCTGAGAGACTTAATGTCCCAGTTTCTGACGTGAAGAATGCTATTATCTGGGGTAATCACTCTTCCAGTCAGTATTCTGATGGTTACCCATGCACTGTGAAAAACTGCCGGGGAGAGAAGCCTGGTCGTGAACCTGTTCAAGAGATGAATGGCTGAATGGGGAGGTATTTGCCCTGTCCAGAGCGGGCGCTGCATTCTCAAACGAGGAGCTCTCACGGCTGGTTTTTTGCTGCACTAAANTGGGGACAATTCCGGACTGGTGTGGGAACCCTG



gi|12034468|gb|AL508253.1|AL508253 AL508253 Hordeum vulgare Barke developing caryopsis (3.-15.DAP) Hordeum vulgare subsp. vulgar

CGGACCAGGCTTCATTCCC
||.|||||||||| .|||
GCTTGGTCCGAAGAGAGGT

EST sequence (targeted fragment marked with yellow):
GCTAAACCACTCTCCCTATCCTCGCCTCCAGAAGCTACCCACCGGCTCAAATGGCGGCGAAGGAACCGATGCGCGTGCTCGTCACCGGCGCCGCAGGACAAATCGGATATGCTCTTGTTCCCATGATTGCCAGGGGAATTATGCTTGGTGCAGACCAGCCTGTTATTCTGCATATGTTGGATATTGAATTTGCTGCTGAAGCTCTTAAAGGTGTCAAGATGGAGTTGGTCGATGCTGCATTTCCACTTCTCAAGGGAGTTGTTGCAACAACTGATCCTGTTGAGGCTTGCACTGGTGTGAATGTTGCGGTTATGGTTGGTGGATTCCCCAGGAAGGAGGGAATGGAAAGGAAGGATGTTATGACGAAGAACGTTTCAATCTACAAATCTCAAGCATCTGCTCTTGAAGCTCATGCAGCCCCCAATTGCAAGGTTCTGGTTGTTGCCAATCCAGCAAACACCAATGCTCTTATCCTGAAGGAGTTTGCTCCATCTATCCCTGAGAAGAACATCAGTTGTTTGACCCGTCTTGACCACAACAGGGCACTCGGTCAGATCTCTGAGAGACTTAATGTCCAAGTTTCTGACGTGAAGAATGCTATTATCTGGGGTAATCACTCTTCCAGTCAGTATCCTGATGTTAACCATGCCACTGTGAAGACTGCCAGTGGAGAGAAGCCTGGTTCGTGAACTTTGTTCAA



gi|19152418|gb|BM816404.1|BM816404 HC02D09_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone HC02D09_T3.ab1 similar to DNA-(ap

CGGACCAGGCTTCATTCCC
||.||||||||| ||.|||
GCTTGGTCCGAA-TAGGGG

EST sequence (targeted fragment marked with yellow):
GCTCCCTCCTCGCCTCGCGCAAGGACGCCTTCATCCCGGCCTTCCGCTCCCACTTCTCCTCGCTGCTCGCCACCGTCGAGTCGCAGCTCCTTCTCAGCGGCAAGTCCAACTTCAACACGCTCAACGACGCCACCTCCTTCGAGTTCATCGGCGACGCCTACTTCGGCGTGCTCCCCTCCGCCTCAGACCTCGGCACCACCGGCCCGGCCAAGGCCGCCAAGTGGCTCATATTCCAGCTCCACCCGCTCGTCACGCTCGGCCTCCCCATGATCCTCGAGGAGCCGCTCCTCCACACCGTGCACCTCCCGCCCTTCCTCGTCAGCGGCGACTACAAGGCGCTGTACAAGTACTTCTTCGCCGCCGCGACCAAGGCGCTCGACACCGCCGAGGGCCTCGGGCTGAAGCGGGACGAGGCGTGCCACAACCTGCTGTTCGCCACCGTCTTCAACAGCTACGGCGGCCTCAAGGTGCTGCTCCCGGGGATCCTCGCGCGCATCGCCGACTCCGGAGAGAAGTTCCACAAGAAGCTCGTCACGGAGATACGCGCCGCCGTGGCGGAGGCCGGGCGGCAGGTGACGATAGAGGCGCTGGAGAGATGGAGCTGACCAAGTCGGGCGTGGGGGGAGGCGCTGCGNTTTGGACCCGCCCCGTAAGGTTCCAGTACGGGCCGCGCCAAGGCGGGCATGAAACAATCGAGAGCCACCCACGCGGTTGTTTCGCCGGGGAAAAAAGGGGGGATAAGCCTGGTTCGGGGTACCAACCCGGGTGGCCAAAAAG



gi|21164261|gb|BJ485819.1|BJ485819 BJ485819 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves

CGGACCAGGCTTCATTCCC
||| |||||||.||| ||
GCCGGGTCCGAGGTATAGG

EST sequence (targeted fragment marked with yellow):
TTCACTGATTACTCAACACCAGGAATGTTCATCGATAGCTCGACACTACCCAGGCTGCCTCAAGGAAGGTACATTGATAGCTTGCCACAGTCGAGGCTACCACAAGGAAGGTACATGGATAACTCACCACCGGCCCAGCTTCCACAGAGAAGGTTGGCTGATAACAATCCAGAGCAGTGGCACCAAAGGAGCAATAATCATAACCAGCTAATGGATATGGAGCCTGGGCCGATGGTATCTGGTAGCCTTGGCCTTGGCCTGGCCTATGAAGGTTCAAATCCAAGGTTGCCAGATTTGATGATGGGGCAATCACCACTGTTCGGTCCCAAGCCTGCCACTCTGGACTTCCTTGGGCTTGGCATCGGAGGGACCATGGGCGGCGGCTCCACGGCGGCCAACGGTGGTGGCCTACCGGCATTGATGGTGGGTGGAGAGCTGGACATGGGGTCTGCCGCACAGGCGCCCTCTCCATGGGAGGAGGCACAGAGAAAGACCAACGGCCGCACGATCCTGTGAGAGGTTCTCTTTTTTGTAACCTTAGCGGGCTTTTGTGCTTTGGCTCATCCATTCTTTCAGCTGCTGTGTTGGGTGGTGGTAGGAAAAGCTAGAACCGTGTAAGCTGCAGAACCTGTATATAGATCTTCCCTCTCCCCCCTCCCTCCCTCCTCTCCTGTCTAAATTAAAAGCTATTACTATAGAGCGAATT



gi|13109627|gb|BF620652.2|BF620652 HVSMEc0020H21f Hordeum vulgare seedling shoot EST library HVcDNA0003 (Etiolated and unstresse

CGGACCAGGCTTCATTCCC
||.||||.||||| ||||
GCTTGGTTCGAAGAAAGGT

EST sequence (targeted fragment marked with yellow):
CAGCCCCTGATCCCGCTCCCAATGGCGTCCACCGCCGCGCCGCCCGCCGCCCTCGTCGCCCGCCGCGCCGCGGCCGCCGCGGCCGCGCCGCTGCGGCGCGCGGGGCTCGCGGCCGGGTGCCAGCCGGCGCGCTCGCTGGCGTTCGCGGCCGGCGCCGACCCGCGCCTCGCAGTCCACGTCGCGTCGCGCTGCCGGGCCGCCTCGGCCGCGCGCGGGGCCCGCGCCGTCGCCACCATGGCCAATAAGAGCGTCGGCGACCTCACCGCCGCCGACCTCGAGGGCAAGCGCGTGCTCGTGCGGGCCGACCTCAACGTGCCGCTCGACGACAACCAGAACATCACCGACGACACCCGCATCCGCGCCGCCATCCCCACCATGAAGTACCTCCTCACCAACGGCGCCAAGGTCATCCTCACCAGCCACTTGCGTCGTCCTAAGGGTGCTACTCCTAATTTTAGCTTGGCTCCCCTTGTGCCCAGATTGTCCGAGCTTCTTGGTATTGAGGTGAAAAAAGCAGATGATGTTATTGGCCCAAAAGGTGAGAGGTGGTGGCTGACCTGGCAAATGGTGCTGTTTTGCTCCTCCAAATGTAGCATTTACAAGGAAGAGGAGAAGACGATCCCCAGTTTGGAAAGAAGCTTGGTTCGGTGGCATATCTGTCTGTAAGCGAGCATGTCGAACGCCCTCAGAGCGCATGCTTTGACTGTGGGAGTTACCAAGTGCTAGAAGCTCGTGTGGCGGATTCTTTTACACAGGGACTTGCTGCCTTGTGGGGATGGTTTAACCTAACGCCCTTGGCGCCTGGGGGGTGGCTCAGGGGCCTCCAGCN



gi|13254325|gb|BG365228.1|BG365228 HVSMEi0001O08f Hordeum vulgare 20 DAP spike EST library HVcDNA0010 (20 DAP) Hordeum vulgare s

CGGACCAGGCTTCATTCCC
|||||||||||. ||||
GCCTGGTCCGAGAAAAGGT

EST sequence (targeted fragment marked with yellow):
GACGACGCCAGTGCCTGAGAGGGTTCAAGTTGGTGGCTCTCCATAATATATAACTGATAGGAAGTAGGGCAAAGGTGGATTTGGCCAGGTCTATGTTGGCAGAAGAATAACTGGTGGGGCTTCTCGTACAGGCCCAGATGCATACAACGTTGCACTCAGACTTGAACATCGAAGAAGCAAAGGATGTATTTATGGCCCCCCGTTTGAGTGGCATGTTTATCAGTCTCTCAATGGCTGTTATGGCGTACCATCAGTCCACTACAACGGTCGCCAGGGAGACTACTACATTCTTGTCATGGATATGCTTGGTCCTAGCCTCTGGGATGTATGGAATTCAATGGGACAGGCGATGTCTTCTCATATGGTGGCTTGCATTGCCGTGGCAACCATATCAATCCTTGAGAAGCTTGATTCCAAAGGCTGAAGGCATGGAGATGCGACAGCCCGAAACTTACTGCTTAGCCGACCTGAATCACCTGAAGACAACAAGCTTTACCTTATTGATCTGCGCATAAACCTCCACTGGAAAAGAGCCTGGTCCGAGCCGGCTGTAACATTTGACCCAAGGGCAAGACCCTAGTGGGGAACATGGGGATGACCTGGGGGCCTACTCATAGTGTCCCAACCTGCGCAGAGAAGGTTGACAGAAAACCCCTGGGCCACCCGCGGGTGAGTAACCTAGAGAGGCGTACCCTGAACCGAATTTTGGGTTCCCCGGGCGCGAGCGCTGAGATGGAACAGGGAGACTGCCCTAGTGAGGAGATTGAGGCAAGAGGGCCCCCCCACGTCGACCATATGTTAAGGTGTCCCCTGATTTGATTGAGGAGGGTGCCCTTGGACCCGGACGCCGAGGTAGGGGG



gi|16332713|gb|BG416556.2|BG416556 HVSMEk0012O19f Hordeum vulgare testa/pericarp EST library HVcDNA0013 (normal) Hordeum vulgare

CGGACCAGGCTTCATTCCC
|.||||||||||| |||
GTCTGGTCCGAAGACAGGT

EST sequence (targeted fragment marked with yellow):
AAATGGCGGCGAAAGAACCGATGCGCGTGCTCGTCACCGGCGCCGCAGGACAAATCGGATATGCTCTTGTTCCGATGATTGCCAAGGGAATTATGCTTGGTGCAGACCAGCCTGTTATTCTGCATATGTTGGATATTGAATTTGCTGCTGAAGCTCTTAAAGGTGTCAAGATGGAGTAGGCCGATGCTGCATTTCCACTTCTCAAGGGAGTTGTTGCAACAACTGATCCTGTTGAGGCTTGCACTGGTGTGAATGTTGCGGTTATGGTTGGTGGATTCCCCAGGAAGGAGGGAATGGAAAGGAAGGATGTTATGACAAAGAACGTTTCAATCTACAAATCTGAGGCTTCTGCTCTTGAAGCTCATGCGGCCCCCATTTGCAAGGTTCTGGTTGTTGCCAATCCAGCAAACACCAATGCTCTTATCCTGAAGGAGTTTGCTCCATCTATCCCTGAAAAGACCATCAAATTGTTTGACCGGTCTTGACCACAACAAGGCACTCGGTCAGATCTCTGAGAAACTTAATGTCCAAGTTTCTGACGTGAAAAATGCTATGATCTGGGGTAATCACTCTTTCAGTCAGTATCCTGATGTTAACCATGCCCCTGTGAAGACTGCCATTGGACAGAAGCCTGGTCTGGAACTTGTTCAAAATATGAATTGGCTGAATGGGAAGTTCTTTGCCACTGGCCAGCAGCGTGGCGCCTGAATCATCAAAGCCAGGAAGCTTTCCAAGGGCTTTTTTTGTGGCAGGTTAGTTTGTGATCACATCCCGGACTGGGTTTTGGGAAACCCTTGAGGAACCTTTGTTTCACTGGGTGGTTCCCTCGTTGGGTAATACGGGACCCCCGGGGGTGTTAATTTCCTCCTTCCCGATACCGTCACAGGGGGGGAATGGACATTTGTACAGGGCCCCGGATAGGAAATTTTCCAAGGAAAATAGATGCACACCTCCCGGAGCTGT



gi|21964686|gb|BQ756214.1|BQ756214 EBem06_SQ001_L02_R embryo, 21 DPA, no treatment, cv Optic, EBem06 Hordeum vulgare subsp. vulg

CGGACCAGGCTTCATTCCC
||||||| ||||| |.|||
GCCTGGTACGAAG-AGGGG

EST sequence (targeted fragment marked with yellow):
GATTCAAGAAACAATCCAACGCAGTACAGCCCGAGGAGATCGATCGATCTCTAGATCATCCGGCACGAATGGCGGGCATGGTGTTCAGGTTGGAGAACCCGATGATGACGGCGCTGCAGCACCTGCTGGACTTCCCGGATGGCTAGGCCGGCGGACCAAGCGACACCGGCGGGGAGAAGCATGGTCCGACACGCACGTACGTACGCGACGCGCGCGCCATGGCGGCCACACCGGACGACGTGAAAGAGCTGTCGGGCGCGTACTCGTTCTTGGTGGACATGCCCGGGCTCGGG



gi|13109587|gb|BF620601.2|BF620601 HVSMEc0020F17f Hordeum vulgare seedling shoot EST library HVcDNA0003 (Etiolated and unstresse

CGGACCAGGCTTCATTCCC
||.|||||||||||..||
GCTTGGTCCGAAGTGGGGA

EST sequence (targeted fragment marked with yellow):
GCACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAGATTCCCAAATAGGTCAACCTTTTAAACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTTGTGCTGCTAGGCGAAGCGGTTGAGTGCCGCACCCTAGATGGCTAAAGTCCAGTAGCCGAAAGCATCACTAGCTTATGCTCTGACCCGAGTAGCATGGGGCACGTGGAATCCCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTCCTGGGTGACCGATAGCGAAGTAGTACCGTGAGGGAAAGGTGAAAAGAACCCCCAGTGGGTAGTGAAATAGAACGTGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGAAAGTGATCTCTGACCGCGTGCCTGTTGAAGATGAGCCGGCGACTCATAGGCAGTGGCTTGGTTAAGGGAAACGGACCCACCGGAGCCGTAGCGAAAGCGAGTCTTAATAGGGCGATTGTCACTGCTTATGGACCCGAACCCTGGTTGATCTATCCATGACCAGGATGAAGCTTGGATGAAACTAAGCAGAAGTCCGAACCGACTGATGTTGAAGATCCAACGGATGAGTTGGGTTAGGGGTGGAATGGCACTTCAACCCAGAGCTAGCTGGGTCTTCCCGAAATGCGTTAAGCCGCAAAGTTGACTGGGCATCTAGGGGTGAAGCCTGGTTCGGGGCGGGGCTGGCGAGGGGAACCAATAG



gi|217048419|gb|GH215939.1|GH215939 HVSMEf0016H01r2 Hordeum vulgare seedling root (etiolated unstressed) cDNA library HVSMEf (HV

CGGACCAGGCTTCATTCCC
|||||||.|| ||||||
ACCTGGTCTGACATAAGGG

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTTTTTTTTGAGCGCAACATAACATGTGAGGATATCACTAAATAAAATGACTATGATTCGTTTTGGCGCAAGGGAATACAGTCTGGTCCAACATATCTCCTCAACTCCCTAAACTAGAAGGTGGGAGGCAAAAGGGAAGGGAAGGGAGCCCTTGGCTCAAGCAATATCATTTTGTACGTTCCATGCTGTCCCTTTTTTGATCGAAGGACCAAACTGACTGCATATCAGGATTTGTTGGAAATAAACCAGCATGCGCTCCAGTTGGTGAGTGGATTTGATTTGCTCCCTGAGATTCATTCAGCACCACTTCCGACTTGCACCAAGGATGACCAGGACCAGGTGACCCAAAGGGGTGTGCATGGACCACTTTGTTTGGAGATTCAAAAACCAACTCACTGTGAACAGGAGTTTCTGGAAAATTGTGTGAAAGGAACAGACTCTCTGTATCAAGAAGCAATTGCTGGAAAGGTGATTTCTGCAGCCATAAATCACTGTCATGCAAACCAGCACCAAGGGGGTTCCTTGTTCCACCATTCAAGTTACTGACACCATGGTTAAACTGATCCTTATTTGGTA