| mature miRNA: CGGAGAAGCAGGTCACGTGCG species: Ipomoea nil database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|27243326|gb|BJ561506.1|BJ561506 BJ561506 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm34a16 5', mRNA CGGAGAAGCAGGTCACGTGCG EST sequence (targeted fragment marked with yellow): GCGCTTATGTTAGCTGCAGCGTTGAAGTGGAAGAAGTAGTTGAAGCAAAGCACTTGACTTTTCCGATTCCAACTATCAGCTTCTAGTTTTCCGGCGACTTCCTGCGCTCTGTAGAGATGGGGTGGATGTCTCGATTCTCAACAGTTCTTGCTTTCTTAGCGATCGGAGTGGTGTTTTCACCGGAAACTTTTGGATCAAAATCCGACGGTCAGTATCCTCTCAAGACCGTCACTTTTCTGAAATTAGCGCACCTGCTCTGCTTCTCCACCGCTTGGGGCGCCGCTCTGTGGATCACCTTCNTCGGCGGCATTATCATGTTCAAGAATCTGCCGAGGCATCAGTTTGGGAATCTGCAGAGCAAGATGTTCCCGGCGTACTTTACTTTGGTCGGAGTGTGCTGCGCGGTCTCAGTGGCGGCCTTTGGGTACATGCACCCATGGAAGACGTCCACTAGTGCTGAAAAGTATCAGATTGTCTTCATTCTGGGTGCCTTTGCTTT | |||||||||
gi|27259210|gb|BJ577382.1|BJ577382 BJ577382 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm34o21 3', mRNA CGGAGAAGCAGGTCACGTGCG EST sequence (targeted fragment marked with yellow): CGGAAACTTTTGGATCAAAATCCGACGGTCAGTATCCTCTCAAGACCGTCACTTTTCTGAAATTAGCGCACNTGCTCTGCTTCTCCACCGCTTGGGGCGCCGCTCTGTGGGTCACCTTCATCGGCGGCATTATCATGTTCAAGAATCTGCCGAGGCATCAGTTTGGGAATCTGCAGAGCAAGATGTTCCCGGCGTACTTTACTTTGGTCGGAGTGTGCTGCGCGGTCTCAGTGGCGGCCTTTGGGTACATGCATCCATGGAAGACGTCCACTAGTGCTGAAAAGTATCAGATTGTCTTCATTCTGGGTGCCTTTGCTTTCAACCTCAGCAATCTTTTCGTGTTTACTCCCATGACTATCCAGATGATGAAGCAAAGGCATAAAATTGAGAAAGAGTCAAATATTGGAGATGAAGTTGGGTGGACCAAGAATCAGGAAGTTGCCAAGGTTAATCCAAAGCTTGCTGCCATGAACAAGAAATTCGGAATGGTTCATGGACTCTCTTCTCTTGCGAATATCGTGTCTTTTGGTTGCCTTGCCATGCACTCCTGGTATTTAGCTGGAAAAATTAATTTTTAGATTGAATTGCGGAATATGACCGCCCTCAGATGTTGTGGGCCTTATAACTATGTATTAAAATCCAGAGATAATGTGTGCCAAAAAAATAAA | |||||||||
gi|27259456|gb|BJ577628.1|BJ577628 BJ577628 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm35k22 3', mRNA CGGAGAAGCAGGTCACGTGCG EST sequence (targeted fragment marked with yellow): CTCAACAGTTCTTGCTTTCTTAGCGATCGGAGTGGTGTTTTCACCGGAAACTTTTGGATCAAAATCCGACGGTCAGTATCCTCTCAAGACCGTCACTTTTCTGAAATTAGCGCACCTGCTCTGCTTCTCCACCGCTTGGGGCGCCGCTCTGTGGGTCACCTTCATCGGCGGCATTATCATGTTCAAGAATCTGCCGAGGCATCAGTTTGGGAATCTGCAGAGCAAGATGTTCCCGGCGTACTTTACTTTGGTCGGAGTGTGCTGCGCGGTCTCAGTGGCGGCCTTTGGGTACATGCATCCATGGAAGACGTCCACTAGTGCTGAAAAGTATCAGATTGTCTTCATTCTGGGTGCCTTTGCTTTCAACCTCAGCAATCTTTTCGTGTTTACTCCCATGACTATCCAGATGATGAAGCAAAGGCATAAAATTGAGAAAGAGTCAAATATTGGAGATGAAGTTGGGTGGACCAAGAATCAGGAAGTTGCCAAGGTTAATCCAAAGCTTGCTGCCATGAACAAGAAATTCGGAATGGTTCATGGACTCTCTTCTCTTGCGAATATCGTGTCTTTTGGTTGCCTTGCCATGCACTCCTGGTATTTAGCTGGAAAAATTAATTTTTAGATTGAATTGCGGAATATGACCGCCCTCAGATGTTGTGGGCCTTATAACTATGTATTAAAATCCAGAGATAATGTGTGCCAAAAAAATAAAAATATC | |||||||||
gi|27259363|gb|BJ577535.1|BJ577535 BJ577535 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm35g12 3', mRNA CGGAGAAGCAGGTCACGTGCG EST sequence (targeted fragment marked with yellow): GGTTATGCATGAATATAGATTGGAGGGGAANTATTCCATCCCAAACCACAAGAACGAATGGGTGATCTGCAGAGTGTTCAAGAAGACTTCCGGCGNCCACAAGATCCATATTTCCGGGCTCACCAGGGGGGAGGGTCTGCCGGCGTTAATGGAAGTATCTGCAACTTCCGGCGAGGCGATGCCGCACGTGACCTGCTTCTCCGGCTCCAAGGAGGACAAAAAACCCATCGCTCCCCATTTCTNTTCATNGAAAAANTCAGATTTTTCNGGCGTCTTCCCCAGCCTGGAATTTCAGCACTACTNTGAACCGGNCGACCACTCGGTTCTGCGCCTCTGGCTGGAGAACANCGGGCTGCAAGCGAAGCAGGATAATGATGNNGATGAGTTCTTGATGAGCTCAGAAGCCGGTCCGGTGGACNTGGATTGTCTNTGGAATTATTGAATCTGAAAAAGACAGATNGAGAGAGCAGTGATTTAATGGTTGAAGATGCAGAAGAAGAAGCATGTGGATAGATAGAATTATAGAAAGAAAGAAAGAACAGAGGAATGACATAGAGTGATTGTGTGATCATCAGTCCATCATCATATTGATATTGCTGCAAATAATTTTTCTTTATGTCTATATTTTCATTAATTAAGACATGGCTGTGTTGTATTGTATATATTTCTTGGGAAACTAATTGCTCTGATAATACAAAAATATC | |||||||||