| mature miRNA: CGGGCGCGCCGGAATCCGTGG species: Chlamydomonas reinhardtii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|14238178|gb|BG856994.1|BG856994 1024049C07.x1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDN CGGGCGCGCCGGAATCCGTGG EST sequence (targeted fragment marked with yellow): GGGGGGGCCGGGCGCGNGGCGCGCGGGGCGCCCCCGGGCGCCGGCGCGCCCGCGTATTGTGGGGGGCCGAAAAAACCCCGGTTTTTTGGGGGGGGGCNGGAAGGGGCCCCCCCNCGNGGNGCGCGCGCCCGGCCCCGCGCGTCGNCCCCCGCCCCCCCCACCGGCAGACAAGGGCCCCAGGCAAAGCAAGACGAGCGGGAGCCGACGCGGAGGAGACGCGAGGGGGGGGAGGGGGGGGGCGGGCAGAGAGGCAACGAGACGACGCCGACGACACCACCGACGCAGAGACCACCAGGCAGAGACGGGGCGCGCGCGACCGCACACAGGAGCAGAAAAGGAACAGCAAAGAGGGAGGACGCACAGCCCGCACCACACACCGCCGAAGAGAGCGGCAGGGCAGAGGCGCGGAAAGAGAGGGGGGGAGGGGACAGAGAGAAGAGGACAAGAGGGCCAGGGAAGACAAGAGCGGAGAAAGAAAGGAGCGAGGGAAGGAAGACAGGGAGAAGGGAACAGGAAAACCTAGGCAACAGCAAAGGAGAGGGGGGACGGAGCAGAGAAGAAAGAGGCCAAAGACACGAGGCCGACAGCGAACAGAGAGAGGGACAGCAGGCCCAGAGACGACACAAGAACGGGACGGGAGGAGCAGCGGGCGACGGCGCGAGAAAGAGCGGAAACGGGGGGGACAGGAAGCGTGACGCACGGGGCGACGGAACAACAACGAAGCAGGGGGGAAGGGGGAGGACAAGCGGGGAAGGAGACCGAGACGAGGGCAACGCAGGAGCCCAGAACCCCAGCAGCACCACGCAGCGACCAAACGAGCAGCAGAGCCGCAGCCAAGGGACGCGCGCGCAAACGGCACGGCCAAACGGACGCACGAAGGAGAGGAGCCCACGCCCGACAGAGGCGCGCAGGGGGGGAGCAGAAGCAGAGGGTCCGGGGGCGGGAGACGGCACGCGGGCGACGGCGAGAACAAAAGAAGGGAGAGGGCAGGGCGGGCAGGGAGGCGGAGCGAGGAAGAAGAGAGGAGAACGGGAGAAACGCGAGAAGAGTAAGGAGCCAGACCAGAGTAAAGAAGAACGCGAGAAGCACGTGAGAGCCCCACACACACNCCCGAAGAGCATAGGGACGGCAGGCAGGAGAGGCGGTAGTCGCGAGTTGAGGACGAGAAACACCAAAAGAACCCGCGGCCCAAGCACGCCCGCTCNCCAGTCGCACCGCGAACCCCTGCGGGGAGCCACCTCGACCACGGCGCGCCACAGAGCGACCGCGACACAGACCGN | |||||||||
gi|8287198|gb|BE024757.1|BE024757 894005H08.y1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDNA, CGGGCGCGCCGGAATCCGTGG EST sequence (targeted fragment marked with yellow): GACCGACGCCGCCTCGCAGGACTCGCAGGACGCCATCGCCATTGCCGCCAACGAGGCCGCCATTGCCGCCGCTAAGGGCATTGAGGCGCCCGAGCTGCCGCCCGTCCCCGTCGACGCTGCTGGCCACCACACCATCCCCGCCGGCCACCACGCCGGCGAGCAGTACAGCGCTTTTGTGCCGCGCTGGTTGGACATTGGCACCCGCCGCGACAAGACCTTGAACCCTTACTTCTGGACCTTCATGGGCATTGTGCTGCTCTTCACCGTGCCCTTCTACCGCCCGCCCGGCTCCAAGGACGGCTACGTCGGCTCCATCGGCGCCTGGCCCTTCACCTCGCTGTTCCTGTCGGGCATCCTGGCCATCTGCGGCTCCGTCACCTTCCTGTACTTCTGGACCGACTACCGCCCCATCAAGGAGTCCGTCGCGCCCGGCATGTTGCCGCCGCANGAGGTGGTGGTCGCGGAGCCGGGCGCCGAGAACGGAGCGGCAGT | |||||||||
gi|161821619|gb|FC108744.1|FC108744 CACW7585.fwd CACW Chlamydomonas reinhardtii Strain S1D2 normal Chlamydomonas reinhardtii cDN CGGGCGCGCCGGAATCCGTGG EST sequence (targeted fragment marked with yellow): GGCTCCGTCACCTTCCTGTACTTCTGGACCGACTACCGCCCCATCAAGGAGTCCGTCGCGCCCGGCATGTTGCCGCCGCAGGAGGTGGTGGTCGCGGAGCCGGGCGCCGAGAACGGAGCGGCGGTCAGCGTGGTGGCGGCCGCCGCAGAGCCCATCAAGGCCTAGGCTTCCTCTGACGCCTGGCGAGGTGGCCTCGGGTTCAGAGGCAGGCTGTACGGCATCGTGGAACCGTACATGGCAGGCGCTGGTGGGGTGGCAATGGCGGTGGCGGTGGCGGCGTGATGTTCGCGGTGAGCGGGGCGTGTGACCATGGGCGGGGTTCGAGAGCATGTGGGGCGGGGGCATGATTCTGGCGTTGTGTTGCAGTTCGAGACAGCAATAAAGGACATAGCTTTTTGGATGTGTCGTGTATACGTACGTGATCGAGCCCAGCCTGAAGTTGCATTGGCGTGCGGTTTGAATGATGGGCGGGTGTCCCGGCATCGCCTTGCGCATTGTGATAAGATAGTGTGAGGGGTGCGTGGGACGACCGCGGCCTGTGTCCGGCTCGTGTGTATGTTGGTGCTGGTGCGAATGAAGAGATATTGCTGTGCTGCTCGAATGCCAGGGAATGCCAACCTCTCCCCAAAGAATGTATGTGCGCTTGTACTCGGCAACTGTGGTGTCATGCAGTCGCGAATGCACGGTTTGCTCCACTACTAACAGAATTGTCGTTCACGCTGACGCTTCGGAATATGTATGAAAGGCCATCCGGCCTCTCGTGGGGGATGCAAGTTGCCTG | |||||||||
gi|12256802|gb|BF866658.1|BF866658 963070H12.y1 C. reinhardtii CC-1690, Stress condition I, normalized, Lambda Zap II Chlamydomo CGGGCGCGCCGGAATCCGTGG EST sequence (targeted fragment marked with yellow): ATGGATTAGCGCCAAGACTACGCAATTATTTCCTCACTAAAGGGAACAAAAGCTGGAGCTCCACCGCGGTGGCGGCCGCTCTAGAACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGCTGAGGCGGCGCGAGGCGGCAACCTGCGTGAAAGGATGCACCGACGCAGGCGTGTGGCAGGATATGCTTTATTCATACGTTGTACTGGTCGCTTGGATGAATCCCGCAAATTTTCGAGAGCGCCGTCAATAAAGGGCCGCCAAGGCCGGACGAAAGGTCACTGAAGTCGCCTCGCGCGGACGTGCAATGTGAGTGGATGCTAGGGCGTGCCAGCGCTATGAGCTTGGGTTGNATGTGCAATCATATCTTTATTTTGAATGATGTGAGTGCTGTTAGCTTTGTCAACCCCTTGGTATAGCGTTGCTAGACAGGTACGAGGAGTTGAGCATGTAGTTTTCTGTAAGATCTTGTTGGCCGAGTTTATATAAGGTAGTTGTCTTTATTTTAGAGGTTGAAATTTCAGTGAGACAAAACTAGAGTTTAGGCGTCGCATATAGGTAAGAGAGTGGGAGTAGAGGTCAAGTTTAGGGTTATGGTTACCGATTTTGTGCCGAGCAGGGAGAGGATAGTTGTGCTATTTNAGGGGATGTCTGCAGCAGTAGTGAAGAGAAGCAGGGTGAGAGAGAGTCCTTTAGCCTGGAGTAAGGGGGGAGTCGAGCATTCAGGGCATAGCGAGCGAGGAGCTAGGTAGATCCCGCCGCAGGTTCCGGCGCGCCAGGG | |||||||||
gi|10127293|gb|BE725997.1|BE725997 894087H02.y1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDNA CGGGCGCGCCGGAATCCGTGG EST sequence (targeted fragment marked with yellow): GACCGACGCCGCCTCGCAGGACTCGCAGGACGCCATCGCCATTGCCGCCAACGAGGCCGCCATTGCCGCCGCTAAGGGCATTGAGGCGCCCGAGCTGCCGCCCGTCCCCGTCGACGCTGCTGGCCACCACACCATCCCCGCCGGCCACCACGCCGGCGAGCAGTACAGCGCTTTTGTGCCGCGCTGGTTGGACATTGGCACCCGCCGCGACAAGACCTTGAACCCTTACTTCTGGACCTTCATGGGCATTGTGCTGCTCTTCACCGTGCCCTTCTACCGCCCGCCCGGCTCCAAGGACGGCTACGTCGGCTCCATCGGCGCCTGGCCCTTCACCTCGCTGTTCCTGTCGGGCATCCTGGCCATCTGCGGCTCCGTCACCTTCCTGTACTTCTGGACCGACTACCGCCCCATCAAGGAGTCCGTCGCGCCCGGCATGTTGCCGCCGCAGGAGGTGGGTGGTCGCGGAGCCGGGCGCCGAGAACGGAGCGGCAGTCAAGCGTGGTGGCGGCCGCCGCAGAGCCCATCAAGGGCCTAGCTTCCTCTCTCGCCTGGCG | |||||||||