| mature miRNA: CGGGGAACAGGCAGAGCATGG species: Poncirus trifoliata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|57879115|gb|CX644286.1|CX644286 UCRPT02_72H12_b Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifolia CGGGGAACAGGCAGAGCATGG EST sequence (targeted fragment marked with yellow): TTTTTTTAAGTGCACATTTTATTATTATGTTGTTTGAAACAATTTAAGATCTACAATTATTAATTTGACTAGAAAAAAAAAAGAAAAAAGAAGAATCTGCTACCTTATTATTCTACACGATTTATTAATTTGTTACAAAAGAAAGGCCTTAACAAGAAAGTATCTCGGCCGCCGTGCTGCTGGGGCTGAAGCCATAATTAAATCATTATAGCCGCATTCACACCCTCTGCTGCATGATCTTTAATTAGGTTGCTAGATTTTCAACAATGAAAAAGGTCACAAATTTGTCGAAAAAGATGTCAATATAAATACACACACACACACACACACTGTTATAACAAAAGTAAGTAAAAATTGCAGATAACATCAAATAAATGAATGCCAAGACAACAGAAATGAAAAAGTAAATGGAGAGGGGAAAAAGACGAGGAAGGCAGAGAGCCAGGGAAGAGGCAGTGCATGGGAGGAGCCAAAACAGGGAACCTGTTAATAGTTCCATCCATGCTCTGCCTGTTCCCCGTCTTTTGTCTCTTGATTCTTGCCTCTCTCTCTCTCTCTCACGCACACACCAAAGAGTTATTACCTCGTACCCCTTAACCATTTGCCGTCTCAGAGTCCGGCTCTTGTCTCACTCCCTCAAAAACCTTACCTGGGCCTC | |||||||||
gi|188454650|gb|EY824187.1|EY824187 PT11-C1-901-062-C05-CT.F Poncirus trifoliata leaf, infected with CTV Citrus trifoliata cDNA, CGGGGAACAGGCAGAGCATGG EST sequence (targeted fragment marked with yellow): CAAGAGAGTCCCTAAACTGAGCCCATTTCCGTTTTAATTAAGAATTCTTTCTTCTTTCTTTCTGTTGTGAGAACTAAGAAAAGAGATGACGACGACAAACGGCGTCGCTTCGTTGAGGTTGATATCCGATGAGATCGATGGTTTTGATTTATCGCCGTCTGATGCTGAAGAAGTTCATGTCCTGGCGGTTGATGATAGCTTTGTTGATAGAAAAGTCCTCGAGAGGTTGCTAACGATCTCTTCTTGTGGAGTGACTGCAGTTGATAACGGAAGGAGGGCTCTGCAATTCCTTGGATTATATGAGGAACAGAGCGTTAATGGCTTTGATGGTTTGAAAGTGGATTTGATAATCACAGATTACTGTATGCCTGGAATGACCGGATACGAGTTACTTAAGAAAATCAAGGAGTCATCTGCTCTCAGAGAGATACCAGTTGTAATTATGTCATCAGAAAATATTTTGGCGCGCATAGACAGATGTTTAGAGGACGGAGCAGAGGATTTTATAGTGAAACCGGTGAAATTATCAGATGTGAAAAGGATTAAAGATTACTTGACGAGAGACGTTAATTTGGGAAATGAAGGGAGAGGCATTAACAAGAGGAAGGCACGAGAAAGTTGTGATCTGTCTTCATCACCTCCGTCCGTTATAAAATCCTCATCCTCTCCCTCTTCCCCGTCCTCCCCGTCCTCACGCTTTAGATCCCCGCCCCCTTACCTCCTCCTCACCCCCGGGGTCTCCTTCTTTGACAGTTAAATTCCCCCCCCACCCGTCTCCAAATGACCCATCTCTGATATAATTCTTTTCTTGGATTTTTACGGTTAAGGGAATCCTCCAAATGGCCCCATTTCTCCCTTTGGGTTTGCCCCCCTAAAGGGGACAAAAATAAGATTACGCCCACCCCCCCCCCCCAAAAAAAATTTATATGGGAGGAGTGTCTAGCAGGGGGGGCGCCCTCCCCCCTGAGATCACAACCTTTTTTCTTCCCCTC | |||||||||