| mature miRNA: CGGTCGCCGGTGGTCAATGGT species: Medicago truncatula database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|27810921|gb|CB065343.1|CB065343 EST645024 HOGA Medicago truncatula cDNA clone HOGA-2E1, mRNA sequence CGGTCGCCGGTGGTCAATGGT EST sequence (targeted fragment marked with yellow): CGCCCTGGCGCGTGTGCCGATGGCCACCGGTGACCGTGCCGAGGTCGAAATACGCTGCAAGTGGTACCCGGTGCGGGTGGTCAAGCCGACCTTCGTGCGCCACGGCAAGATTTTGATCTGAACAACTAATCATTGGCGGGCCGACCGCTGACCCTATCGAGGAATTCAAGACATGAGCAATATCCCCGCCGATCTGCGTTTCGCCGAAAGCCACGAGTGGGCGCGCCTGGAGGCCGATGGCACGGTGACCGTGGGCATCAGCGACCACGCCCAGCAGGCTCTGGGTGACGTGGTGTTCGTCGAACTGGCAGAGGTTGGCAAGGTCTTCGCCGCTGGCGATGCCGCAGGTGTGGTCGAGTCGGTCAAGGCCGCTTCGGACATCTACGCGCCGGTTTCCGGTGAAGTGATCGCCGTCAACGATGAGCTGGCCGACAGCCCGGAGCTGCTCAACGACGAGCCCTACGATTCGTGGATCTTCAAACTGAAGCCGAGCGACAAGACTGAGCTGGAAAAACTGCTGGATGCCGCTGGCTACAAGGCTGCCATCGGCGAGTGAGACGGTGTCGCACTCTTCGCGGGCAAGCCCGC | |||||||||
gi|157980050|gb|EX528322.1|EX528322 MTGland_A040_2007-06-23/MtGland_A040_D10_037_1 Medicago truncatula A17 glandular trichome Me CGGTCGCCGGTGGTCAATGGT EST sequence (targeted fragment marked with yellow): GNNNCNNNNNNACGGCCGGGGGAGTGCTTATGATGTAATGTTTAGAATCAGATATGCAGCGGAATAAAACAGAGCAGAGAAAAGAAAGAGAGACACAAGCAATTATCCTGGTTCCTTCCACAATCCGGAAGTAGTCCAGTCCCCCTTGCACTTCCAAGGAGATTTTCACTAATAATCTTATAGATTACAAATGCTCAATACTCTCTTAGTATGAGACTTCTCAAATGCTCAAGCACGCAGGCGAGAGACTTCCAATGCTCAAGCACTAAAGCAAGAGTCTTATAATGCTCAAGCACACAGGCGAGAGGCTTCTAATCAAACAACAATACACAGAAAAAGTTTGACTTTGAACACTTGATATACAATCAGTGGTGTTCACAATACAATGCAATAAAGACTCTAGACTTAAGAATTTCTAAGATGTATCAAATCAGTGCAGAAATTCAAAGTGCTTTGTAGAATCAAATTTGGGGAGGGTGCAGCGGTGGCCAAAGAAAGAAGATGGGAAGAGAAGAGGAGGATACGACGTAGAGGGAAGAGAAAACAGAGAAGAGAGAAGAGCGAGTTTACAGAATTGCCCTTCATGTTGTGCTGAAAATTCAATTTTGTCTTTGCATTTTAATGGAAATTACAAAATTGCCCATGGTGTTATATTTGTGTCATAATTTGTGTGTTCAGTTATCATTTCTGAATTTTTTTCTTTCTCTTTCTTCTCTCCCTCTCCCACTGCTTCCTTTCTCTCTCATCTTCCACCAACCAACAACCCACTGTACCTCCTTCTCTCCGGCCATCGACCACCGGCGACCACCACCATCAACCTTCTCATTTCGCGCCACCACCATCATCCCTCTTCTCTGATCCACTCGGATCTATCACACCACCNTCACCACTATCCCTTTTCTTTCTATCCCCTTCATTACTCCCNAATAATNNCGCCGACGTTGTTAAGATCTGCTTCNCTCTCNNAANANCAGNTNNNNNANNNNCGTT | |||||||||