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mature miRNA: CGTGAGGTACCGATACCTCAA
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|86597402|gb|CI282526.1|CI282526 CI282526 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo 

CGTGAGGTACCGATACCTCAA
||.|||||||||||||||| |
GCGCTCCATGGCTATGGAGCT

EST sequence (targeted fragment marked with yellow):
TTTTTATATGAAGTTTTTCTTCGGTCAACAAAAAGTATCTCGAGGTATCGGTACCTCGCGGTACAAAATCATTTCCGATCGTTGGATCTAACGATGCCCAACCCACCCAGCTAGATCCAACGATCGGAAACAATTTGGTACCGTGAGGTATCGGTACCTCGAGTTACTTTTTGTTGGACCGGAGTAAATCTCATCTCCTATATACAAATAACACACAAAGACGAACAAATTAACGTCCATATATCGATCGGTCCAAAGAATGACCCCCGATCGACCTATCTACACGCAAGAACACCTCAAATCATCATCAACGATATGATGTGGTATCAACGATCAGTAGCCGGCGATCTCCGAGCTCTGCTGGTCGCCGTGCTTCTTGCCACCGGACTTCTTCTGCTGGTACTTGTCCTTGATCCACTGGAACCCATGCGCCGTCCCCTCCTTCACCTTCCTCAGCCCGCTCGCCGCCGCCGCCTTCGTCTTCTCCATACCCTTCTTCCCTCCTCCTCCTCCTCCGCCGCCGCTCCTCTTCCCCGACGACGAC


gi|88245701|gb|CI245550.1|CI245550 CI245550 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat 

CGTGAGGTACCGATACCTCAA
||.|||||||||||||||| |
GCGCTCCATGGCTATGGAGCT

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTTTTGGAAACAAATCCCAATCTCTTTTATATCTACAAGAGAAAAAAAATAACAGAATCAAACAAACTACGAACAAGAGCACCCATCTCCTATATGAGTTTTTCTTCGGTCCAACAAAAAGTATCTCGAGGTATCGGTACCTCGCGGTACAAAATCATTTCCGATCGTTGGATCTAACGATGCCCAACCCACCCAGCTAGATCCAACGATCGGAAACAATTTGGTACCGTGAGGTATCGGTACCTCGAGTTACTTTTTGTTGGACCGGAGTAAATCTCATCTCCTATATACAAATAACACACAAAGACGAACAAATTAACGTCCATATATCGATCGGTCCAAAGAATGACCCCCGATCGACCTATCTACACGCAAGAACACCTCAAATCATCATCAACGATATGATGTGGTATCAACGATCAGTAGCCGGCGATCTCCGAGCTCTGCTGGTCGCCGTGCTTCTTGCCACCGGACTTCTTCTGCTGGTACTTG


gi|89197455|gb|CI010075.1|CI010075 CI010075 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c 

CGTGAGGTACCGATACCTCAA
 ||.|||||||| ||||||||
ACATTCCATGGCCATGGAGTT

EST sequence (targeted fragment marked with yellow):
ACCAATATCAACATTTTCCTTTATTGGAAGAAATGATGTCCCGGTAACAAGGAGATCCGATCGAACGGATGACCCGGAAGAACATCACACTTTTGCAACTTGAAAAATGACAATTGGCCAAAGGCCCAAAGCAGTGACGATGAGATTTGTTTCGGTTCAGCAAAAAGTAATTGAGGTACCGGTACCTTACAGTACTAAATCGTTTCCCATCGATGGACATTGTTAGATTCAACGGTTAGAAACGATTTGGTACCGTGAGGTATCAATACCTTAAGATACTCTTTGTTGGAGCAGAGCAAATCTCGTACCAACTGGGAACTGACCAATACAGTATTGTTTCGGCTTCAGTTGTTCGCAGCGGCAGCCCGCCTCACCCTGACGAACTCGACCAGCTTGTTGTTGTCCGGCATGGCGGCCTTGGCGGCGTCCAGCGCGGCGAAGCGCTCCATCCACGCGTTCAGGAGAGGGCTTCTAGTGGCATCGAAGGTCCTCCTCCCGTGCAGAGCCTCGCCGGCGCGCATCCATCCGATCATGGCGCCGAGCG


gi|88290298|gb|CI550520.1|CI550520 CI550520 Oryza sativa (japonica cultivar-group) root of seedling 6ppm CdCl2 for 3 days Oryza 

CGTGAGGTACCGATACCTCAA
|.|||||||||. |||||| |
GTACTCCATGGTCATGGAGCT

EST sequence (targeted fragment marked with yellow):
GGTCAAAAGTCAACAACATTATACATTAAAATACGGTGGGAGGACCTTATTGAGTAACGTTACAAATGCTGAGCCCCACTAACTTATGTGAGCCGGCCACAGATACATGTTTAGCTGTAGAGGCTAGATTTACTTTTATAATTGAGATTTGTTCTTGTCCAATCAAAAGTATCTCGAGGTACTGGTACCTCATGGTGCTAAATCGTTTTCGATCGTTGGATCTAACAATGTCTATCTTACCCAGTTAGATCCAACGATCGAAAACAATTTAGTCCCATGAGGTACCTCGTGGTACTTTTTGATGGATCTAAGCAAATATGTTATTACTCCCTCCGTCATGGATATGCTTGCAAATGGAACAACAGCCGCCGCAACACGGATGTGCGCACACGAAGA


gi|88240102|gb|CI239264.1|CI239264 CI239264 Oryza sativa (japonica cultivar-group) Shoot and root of germinating seeds Oryza sat 

CGTGAGGTACCGATACCTCAA
|||||||||||||||||||||
GCACTCCATGGCTATGGAGTT

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTCAACAAATATACCTCAGAATGAAGTTTTGAGGGACTAAATTATATGTAGGGCGGTAGATTGATAATGGTTTATAGAGATTTGCTCCGATCAAATAAAAAATATCTTGAGGTATCGGTACCTCACGGTACTAAATCTTTTCTAATTGTTGGATTTGACGATACCTATCCTACCGAGCTATATCTAGTGATCAGAGATGATTTGGTACCGTGAGGTACCGGTACTTCGAGATATTTTTTTGCTAGACTGGAGCAAATATCTGGTTTATATGATCGGTAACGAGAGCAAAGCAAAATATGTTTTAGGAATTCTGGATTCATTAGCCTAGCTGCCTAGGCGGTGATGGTGCGGCCACCGTCGACGCAGATGACCTGCCCGGTGATGTACGGCGCCGCCGGCATGCAGAGGAACGCGACGAGCGACGCCACCTCCTCGGGCTCGCCGATGCGGCCCATGACGACCCGCGCCGCCTCCCTCTCCTCCATCGCCCGCGCCGCCCCCGGCTCCAGCGCCACGCCGCTGCTGCCGGCGATATCGGTCC


gi|88270682|gb|CI385940.1|CI385940 CI385940 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone 

CGTGAGGTACCGATACCTCAA
||||||||||||||||||| |
GCACTCCATGGCTATGGAGCT

EST sequence (targeted fragment marked with yellow):
GGGCTCTTCAAAGATAGATAGTTACCATTTTCAGAAATACATGTCCTACAAGCGATTTTGCTTGTTCCAATTACAAAATCCAGACAGAGAAATATCAAAAGCAATACCAGCTTAATCAAAACAAATGATACACAGAGCGGATTATGCATGTACCCTCCAGCAGCAATAACAACAGATCAAATACGGTTCTCCGTATCACTTCATCCTCATGTAATAATTAAGAGATTTGCTTCGGTACAACAAAAAGTATCTCGAGGTATCGGTACCTCACGGTACTAAATCATTCAACGGTGCAATCCATCCACTGGCCATGCCTGGAGCTGAACGTTCCTCCACCGTGCCGTATCGCAAATTTCTTCATGATCATCTGCACGCAGGAATTCCACTCCGAGGCCATCTGCTTGACTGACATGGACGGGGGGAGCTCACGCAGCGCGCAGTGAAAAG