| mature miRNA: CTACTCACTCCGTCCCATGAT species: Pseudoroegneria spicata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|207443591|gb|FF350022.1|FF350022 BG02014A2C08.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CTACTCACTCCGTCCCATGAT EST sequence (targeted fragment marked with yellow): ACGCATTTTTTTTTTTTTTTTTTATCTACAATATCAAACATGTACATTCCGAAAATATAACTCATGATGTATCCAATGATATGCATTTGGTATTCTAGATGTACCTATTTTTCTCTATAAATATGGTCAAACTTTGTAATGTTTGACTTTTGAAAAAAATTATAGGCACTGCATTATGAAACGGAGGGAGTAGTTTTCATTCAGTAGGCCGAGCATAGCATAGCAGATAAAAGACCCACGGAGCCAGCCTAGGTGGGTGGCTACCAGGCAGAGATCCTCATGCCGAGATCGTTCTGCGCGAAGGCGACGAGGTTCTCCACCTCGGCGTCGTCGACGAAGCCGCTGTTGTCCCTGTCGGCGCGGCGGACGGCGCGGCCGGCCCTGAGGGTCGTGAACCAGCCGCCGCGGCGGCGGATGGCCTCGCGGAGCTCGGCCCTGCTGATCCGGCCATCGCCGTCCACGTCGAACTGCTTCAGCCACTCCTTGAACTCCTCCACCGTCATCTCCCGCTGCGAAGGTATCCCCCTGATCGCCATGTCCGGCCTCGTTAGCAAGCTCAGAAGTCAGGACCCTTACAGTTGCAGAGACGGGAGGCTGTGCTAGCTAG | |||||||||
gi|207440061|gb|FF344044.1|FF344044 BG02010A1C05.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CTACTCACTCCGTCCCATGAT EST sequence (targeted fragment marked with yellow): GCAGCTTCTGAACTGGATTTTGATGACATGCAAGCAACTTTATTTCAAGCATCAGGTTGACTTGGGGCCTGACACCGGTGAGGTCGGAGACGACGGTTCATGGCAGAGGCCGTCGACAACGTCCAGGACGCCATGTTGCCAGTCTACCATCTGCTCCAGCCCGCTTCATTATTTGCTTGCAAACTTTATTCGTAGTGGCGGCTGCCACTGGTAGTGTCTCGCGTCCCGTCCTGCAATAGACGGCAAGATCCCCATGGTGGTGGAGGTGCAGAACCACGGTCCGATGGACGGCAAGCACTCTGTGCTGATGTTCCTCCGGTGGCCCAATGTGACGGACGGCCGGCCAGCGAGGCAGCTGATTGCGTTCCGTAGCCAGCATCTCAAAGCAGGGGAGAAGGCTGAACTCAAGTTTGACATCAGCCCATGTGAAGACTTGAGCAGGGTGACAGGGAATGGCCACAAGGTGATCGACAGAGGGTCTCGTTTCCTCATGGTTGAGGGGGGCGAGTTGGAGATTCCCTCCGTCCCATAGTGTCAAAAAAACGTCTTGCATTAAGGGACGGAGGGAGTAGTTTTTAGCAAGCTCGGTGTTGGTGTTTCTCTGTGTTAACCCAGTTTAGCTAGGCGCTCATGTTGTTTTAGTTTTTGTTCTTTTTTCTTCGGGTGTGTCTTACTAACGGTCAACTGATTTTCATTTCATCATAAGTCAAATTTTGTGCCCAATCAAAAAAAAAAAAAAAAAATCGGT | |||||||||
gi|207463889|gb|FF360779.1|FF360779 BG02035A1D06.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CTACTCACTCCGTCCCATGAT EST sequence (targeted fragment marked with yellow): ACGCATTTTTNNTTTTTTTTTTTATAGAAGAGTAACACGTTGAAAAATTTGCTGCCTCACTACATGATAGAATAAAGACGCACATGCGTACATACTTAAAAGTTACTTCCTTCGTCTCAATTGCTAGATACAATCGTTTGAGCGTCAATTAACATGGGATGGAGGGAGTACAAAGCTAGAACAACCATCCTTTTCTGTAAAAGTCCGACTAAGAAGCGGAGACATCAGCGGTTGGTTAAATCGTGGCTTCATGCACTCAAACTCGTAGGAACAAACACACACGAACAAAAAGAAGTCAAAACAGATGGCGGCTAATATAATGATTTGCCAGAGATGGAGGGAAATTTTCTTCTTGCCTTCATGCCTTCAAATATGTCTCATGAGGACATTGTACACTTCACCATCCAGCTATTTAGGGTATAGCTCACATTTAAAACCTCCATCAATTCTCTTTTGAGTTATTTCTCTTTTTTCAAAACTTGCAGAACAGAATCTGGTGTTCTCCTTCACTTCAAAGGCCTAGTGAATTCCTTTTCTTTGATCCATGCAAATCTCAGAGAGCAGTTAACATTACATATCATGCTAGCAAAAAACCACGTAGCACTTCTATATCAGGAGGAATACATAAGCAATTCCCGGTTGGCCATTCACGTGCACATATATCAAACTGCGTTCAGATATGTGCAGGGGGGCCATGGGGTGCGATAGAGGCATAGAGCTGGGCCGCGGCGCAGCTTGTGGAGGGACGGCTTGGAGGGGCATCACGGCCGCAGCTTCAGCATATGGGGGAGTTGG | |||||||||
gi|207473860|gb|FF341676.1|FF341676 BG02008A1A03.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CTACTCACTCCGTCCCATGAT EST sequence (targeted fragment marked with yellow): CCTGTGACCGCTACCTCCTAGCGGTGAGGGTGCCCTGCCCCAAGGAGGCGTACTGCTGCGGGAGTTCCATGGTGTACTGCATGGTTGGCGACCACCGCCTGGTGTGCGGTGTGCCCGCACGCGCCGTGCCTCTGCCCTGAGCCCGGCTGCGGCTTCCTCGGCCCGTCGCCGGCGCTCCGTGGCCACCTTGCCGAGCGCCACCAGTGGCCCGTGACTGACATCGCCTACGGGTCCATGCTGGAGCTGGAGGTCCAGATGCAGCCGGCACAGCGGGGGCAGCTGTTCTTGTTGGCGGCGAGCAAGCGCGGCGTCATGGTGGTACAGATGTAAGGTGTGGGTGCACACTCCCGTGGACGCGGACACCGACCACATGGACGTCCTGATGCTGGACGCCAAGGTGAGGAGCTGCGTCGTCCCCGGCGTGGAGGCGGCCATGGACGCGGGCGGCAGGTACCTGCCAGTGTCGGCCGACGTGCCGCCGCAGGAATGAGGGATCGTCCTCCGTCTCCGCATCAACAAGCAGGTCAAGGCGAGGAGCCCCCGTTCCTGGGGTTGACGATTAGCTGGTCAGCTCCGGTTCTTTATCTAATCTACTATATACTCCCTCCGTCCTAAAATAAGTGTCTCGTCTCAAGTTTAAACTTGAGACACTTATTTTGGGACGGAGGGAGTAGTATATATCTACCATGGCTGACGTTGGTGATTTGATAATGAACTAGCAGTGATCAAAGGTTGGACCTTGGTTGGGCTTTTGATTGATTCTTTCCATGGCAATGGTTGCCCATGTATCGCGTACCAATGTGGTTGATCCCTACTTGGCCTGTCCATTTTACTTGTTTG | |||||||||
gi|207511062|gb|FF356011.1|FF356011 BG02027A2C04.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CTACTCACTCCGTCCCATGAT EST sequence (targeted fragment marked with yellow): ATGATCCCATTCGAGTTAAACGGTACACTGGCCATAAGCGCAGCCGGTTTGTGATAAGGTCATGTTTCGGTGGATCTGAGCAGGCCTTTATTGCCAGTGGAAGCGAAGACGCAAAGGTACGATATATTGACTGTGGACGCAAATAAATCAATAAATCATGTTGTCTGCACCATTTCTATTTTATTACTCCCTCCATACCATAATATAAGATGTTATTACAACCAATATGTGAGTGTTATTATGACGCTTATATTATGGGACGGAGGGAGTAGCTTCCAGATAAATGCTACTCCCTCTGTCCCAT | |||||||||
gi|207433842|gb|FF348486.1|FF348486 BG02021A2G09.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CTACTCACTCCGTCCCATGAT EST sequence (targeted fragment marked with yellow): GCGATTTCCTCTCAACTTCCACGTGTAAAATCACTAAGGCTGGGATTGGAGGCCCTCTTGTTAGTCTTGACGGGGATGTTATTGGCATGAACTTCTATGATAAGAGAATAGGAACCCCGTTCCTGTTTTTGGAGGAGATTTTCAAAATTCTAGCATCGTTTGAGAGAAAAAGTAAACTTGGTGAAGTTGGCAATGATAGTGATCCCTCTGGCACGCCTTTCTGGAAAATGGATGATGACAAAAATAAGTTGAACAGGTGGCCTGTGCCCATGCCGTGCTGGCTCAATCCTGACTATGTGGATGAGGATAAATCTGATGATGATGATGTCTTTGATCCCAAATCTGGCCGCGCGCCGAGATACGGTTACTTCAAGGGAAAGAAAGTCATGCTCTTTTAGATGCAGTCACACCCTTGATTGGCCACACAATCTCCATATCATTGCGTGTTTGAGATGGCAGAAGTAACCTGTGGCTTGCTTAAGTCTTATTATGTTCTGCGTCTGTATCTTGGAATCATTCTGTGCTATGTTGTGTAATACTCCCTCCGATCCAAATAAGTTTCTCAGTTTTGAACTAAGGTTAGTTCAACCTTGGTTCAAAACTGCGACACTTATTATGGATCGGAGGGAGTAGCATGCAGTGGTAGTTCAAGTTGCACACTATTGTACTCGTTAAGACCGACTAGTTTGCTGCCTGTGCTGTTTTTCGAATACTGTTTTGGGCACAAATCAATGTTCCGTGTTGGAAGCCTGCCAACCTTATAGGATGGACTCCTCTACAAGACAGCAAATGTAACCCTTGT | |||||||||
gi|207512799|gb|FF341185.1|FF341185 BG02007B2H08.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CTACTCACTCCGTCCCATGAT EST sequence (targeted fragment marked with yellow): GCATTTTTTTTTTTTTTTTTTGAATCTAATGATATATGTTTGGCCTTCTAGATGTAAATGTTTTTGTCTACAAACTTGGTCAAAGTTAGTGAGGTTTGACTTTTCAAAAAATATATATGCACTACATTATGGAACGGAGGGAGTATCATTTAACATCCCACTTTGAACTGACTTCATGAATTCAAGACGGATCGAGCAACTTGTCGCTGTACTTTAACCTTCTTCCCAGTCAATCTCATCTTCCTCATCGTCCCCAGATTCCGGGGCCTCAGCATTCAAATCCACAAACTTATATGGCTCCTCCGATGTATTCCCTGCAGGTTGCTCCTCTTCCCATTCAACACCCTCATCCTCACCATTCTCATCCTCACGTTTGGCTTTCATGCCCACCTGCCGCTCAGAATGAATCTCAGAAGAAAATGCCTGGCCTTCCTGCTGCATTCTCTTTGCATCTTCCTCCTCCTGTCTTTTCTTGAGGGCCTCATAATATGCCTTAAGGTATTCATCCTGTAAACTCTTCTCATCTTCTTTTGAGTCCTGTTTTTCTTCATCTTTGACTTCTGATTTTTCATCTCCTTTTGATGTGTTACTGGACTCTCCTCTTTGTTCTTTTGTAAGATTCATCCCTTCTCTGACCATCCATGGAGGTAAGACTTTCAATGCTGAACCATCTCTGCCAGATTCATCACCTTCTTCTTTTACACCCGAACCAGCCAACTCAACATCAACCTTTGTATCTCCANGATNAGGCATCGGTGTACCATTATACTGCCCTTGTGCATTCCTAGCTGCCTCAGCTGCA | |||||||||
gi|207511766|gb|FF358169.1|FF358169 BG02032A2D08.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CTACTCACTCCGTCCCATGAT EST sequence (targeted fragment marked with yellow): AAACGTTATTATTATTAAATAGATGGATAGCTAGCAATAGTAACGATAGCCCACAACATAGTATAAACTGCTCCCTCCGTCTCATAATATAAGAACGTTTTTGCATGCTTTGTGGGGCGGAGGGAGTAGTTCACATATCCTCGTATAATACGAAGGAAAAACAATCATTATTTATAGGTCTCACGAGTAGCGGGAGAGGAGAGTGGTGCAACGTACGGCTCCGCCAAATTTGCCATCCCTAATAATCCTTGATGAACGAGCATACTCGAGCCTCCTTGTACACCTTTCCTGGCCTGCAGAAGTAGCCCTGCTCCGGAGCGCAGTGCGAATCGTTGGAGCAGACGCAGAGTCCTTCGATGGCGCAACGCTTTTTGATGATGTTGGGGCTCCCATTGATACCGAGCACCTCGTCGGTCCACTCGCTGGAGAAGAGCCCCTCAGGGTCGTACCTGTCTTTCACGCTAAGGAACTCACGGGCTTTCGGGTACTTTGCGATGGCACCGTCGAAGGCGAAGTCGCGGTTCTTGCCCCAGTGCGGAAGGCCGCCATACTTGCGCAGCGCCATCTGCTCGATC | |||||||||