| mature miRNA: CTACTCCCTCCGTCCCTATTT species: Cynodon dactylon database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|209847450|gb|ES297865.1|ES297865 _19X_F01 Bermudagrass Normalized cDNA Library Cynodon dactylon cDNA 5', mRNA sequence CTACTCCCTCCGTCCCTATTT EST sequence (targeted fragment marked with yellow): CGGGCACATCCTCTTCATAGCATCACGCTCATACTCGTGCTGCTCATGACCCTCGTCTCCATGAGCTCCAAGGTAAAGTGACATGATTTCACAATGGATATCCCAACTTCTAGTCTGAATTTCTTGTTGACTTCTACTCCCTCCGTCCCTATTTACTTGTCATCCTAGCCTCCTCCAAATTTCTCAATTTACTTGTCATCCTCGCATCCCAATGCACCTTTTTACTTTTCCAATACATCTCTATCTCTATCTCTCTCCTCCTCGTTTTCAGCGCATCCACCTTTTTCACCTTCTCTTAATCTCCGTGCCCAACTCTAAAACGACAAGTAATTAGGGACGGAGGGAGTACCATTTTGTTTGTCCACGAACTCAGTTCAAGGCAGGGTATTTGGCACCAGGGCTGATGGGGGTGTACGTTGTGTTTCTGTGCTGGTCGGCGATTAGAAGTGAGCCGCACACCGAGAGTTGCAACAGGAAAGCTGAGGTGGCACCAAGTGCAGATTGGCTCAACATCGCGAGTTTTGTTATTGCGGTAATCGTCATCGTCGCGGCTACCTTCTCGACAGGAATAGACTCCAAGTGCTTGCAGTTCAAGAAGGCCGAGTCGGAGGAGGAGGACGACGACATACCCTACGGCTTCGGCTTCTTCCACTTCGTGTTCGCCATGGGCGCCATGTACTTCGCCATGATCTTCGTCG | |||||||||
gi|209847045|gb|ES293093.1|ES293093 _05W_G04 Bermudagrass Normalized cDNA Library Cynodon dactylon cDNA 5', mRNA sequence CTACTCCCTCCGTCCCTATTT EST sequence (targeted fragment marked with yellow): CCTTCGTTCTCCTCCCGCAGAGGCAGAGCCTCTTATCCCCTTCTGTTCCTCATGAACCATGAAGCACACTTCCCAATCCATTCCCAAATCCATGGTGAGCAGCTGAGATGAGCGACCAGGCGCCCGTCGAAGCCCCTCCTCTCCCTCTTCCCCTCCATCTTTTCTTCCTGTTCTTTTTTCTTTTCCTCGGGAAGAAGAAAACCAAGATTGTGTTGTCATGATTGAGCATAGCGATGAGCATGGATGCTAACGATGCTGGTCCTTTTTCCTGCAGATCTAGTGCCTCCCTCACTCCCGACGTTTCCCTGGCCAAGAAACCTTCCTCCTCCTCCACGCCAAGCGACCCAACTATGTGCGGGGTGGCAGCGCCCGTTCCATCCGCGTCGATTCCGTGCGTGCACCAGCGATGGAGGCATGCGGATATTGTGGCTGTCGTGGAGCTCCGACGGGATGCGACGCTTCAGGCTAGCACCGGAGATGAGCGGTGCCGCAACGGCCGTTCGAGTCCCTTCCCCTCTTCCCACCCCCTTCCGCCTCACCGTGCATCGGCATCAGCGTCGAGCTGCGGGAGCAAGGACAGCAGCGTCGGCAGTGTAATCAGGGATGGAGGGAGTACCACGCTCATGGAGGAATGAATTTGAGGTGTTCGAGGCTGACTTCGAGCGGTCACAGTGGTCCAAGGTCACCACCATTGGTGATGACCAGGTGTTGTTTCTGCAGAGACGGTGCTGCAAATTTGTTTGTGTTTCTCAGTACAAGATGCAGGGGGATCGCATTTTCTTGTTGGAGGATGGCGATGATGACGATGACTTGAGGAATGGTAAATGAGATGA | |||||||||
gi|209855380|gb|ES304837.1|ES304837 -49-I22 Bermudagrass Normalized cDNA Library Cynodon dactylon cDNA 5', mRNA sequence CTACTCCCTCCGTCCCTATTT EST sequence (targeted fragment marked with yellow): GGGTCATTAGATATATTTTAAGTTTTACTTATTTATTTTTGTATTTACATAAATATTTTGAATAAGACGAATGGTCAAACGTGACATCTGAAAGTCAACAAATGCTACTATAAATGGACGGAGGGAGTAGGTACGCATCTAATTTCTCATTTCATTTTTGTTTTCCTCCAGAAATCATGTTTTCCTATCTTTATTTTTTCTTCAGACTTTTGAGTCTCTGAGCTTTCGCTTTCCTTATTACCTACAGGTCATCACCCATCTTGCATGGTAGAAAGCTCGCCGCTTGCACTTTGCTCTGTTTGACTAGATGGAGTCATGGAGGGGAACGAACAAGCAGGAGAGAACTGCAGCTTTGGACTGCCAGCTGTTATATCTTAATGTCGTAAGGCCTTTGTTCTGGGTCAGAATCTTGGAAAGTGGTCTTCCATACATATGCAGTTGCAGTGGACGATGACATGATTATTGCGCGTTCACTGGTCTTATTATGTGTAGCGACGCAGCAACAACATGATTCTCTCTTCAATCATTTTAGATGTCAATACCATTTATTGAACATTTGACCTTTTCCGTTATCTGTATAAAATTCACACAATGCTTCCGCAAGCCAAGAGTTGATATCTACATGTATTTTATCTTGAATATATTTTCTATGTACAAAGATCTCAAATCTTGGTTGCTTTTTCTGCTTCAAACTTTGGGAGAAAAAGGGAGAGAAGTGATTGTGCGTCTCCTCAAGGAATTAATAATGAAACACATTATTAA | |||||||||
gi|209862286|gb|ES304568.1|ES304568 -48-N12 Bermudagrass Normalized cDNA Library Cynodon dactylon cDNA 5', mRNA sequence CTACTCCCTCCGTCCCTATTT EST sequence (targeted fragment marked with yellow): GGGGGATACGAGGGTGTCAAGTAAATTGGGAAAACTTGAGAAGGCTAGGATGTCAAATAAATTGGGACGGAGGGAGTACATTCGCTAGGAGGAGCTCCCTCGTGTTCGTGAACCCGCTGCTGTGGTCTGTACAACTTTAACATCCCACGTTGACATTGTTGTTTGTGCTGTAGTGAGTTGAGTATTTGAAAGCGAA | |||||||||
gi|209851415|gb|ES300657.1|ES300657 _34Y_G10 Bermudagrass Normalized cDNA Library Cynodon dactylon cDNA 5', mRNA sequence CTACTCCCTCCGTCCCTATTT EST sequence (targeted fragment marked with yellow): GGGCTTGGCGCCATTTTGGTTTCTGTTTGTGCAGGTCATGAGACTCGTACAGTGCAGATGGGTTCACCTATGAAGCCAATGTGATCAGAGGATAGTTCGACAAAGGGTGTGAATGTGTCTCCTGTAGACAGCCAGCTTCATGAACACCATGAGCTTGTCCCTAATTTCACACTTCAAACTGGGACGGAGGGAGTACAACCATTGCCATTTGTCACTATCTTATCGGTGATACTGCCATATTGTTGAATATATAACTAGATGGTCCTTGGAATTATGCATTCACTGCATGGTCGTACTAGTTCTTTATGTGAATGAGATCCCGCGGATGTGATGGTGGATTGGTGAAGCTTCCTGGTGTCAAAACAGTTTTAAGGGCTTTCTAGGTTGCCCCATGGGCTGTGGTAATGACTAAGATCTTTTGGGAATTATCCTTTATGTTCTGACTTCACATTTAGTTCCTTTTCATTCCAGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATGT | |||||||||
gi|66246621|gb|DN986794.1|DN986794 MSU2_F_PLATE_2_D10 Bermudagrass cv. MSU subtracted cold acclimated cDNA library Cynodon dacty CTACTCCCTCCGTCCCTATTT EST sequence (targeted fragment marked with yellow): TTGGCGGTAGGATACTCCATTGCTGGGGTGAGTCGCTTCCATTCAGAGTATGGTGTTGTTTGGCTGGAGGCCTCCTGTTGGGTCCGGATGGTTTTGTTTATTTTGGTGATCGTTCGGTAATCTGTTCTAGATCGGGTGGAATACGTAATGTTGTCTGGTGAGGTCTACAATCTTATGCGTGGTTTGTGTTAAGATAACGGATGATAGTCTGTTTTGGAATGTATATATTGCTTCGGGTGTTTAATAATGTGTGGATCCTGAGCTCAGGGCGCGTGTTATGGGTAGAGAGTGTTGATTTTTGGACAGGGTTGAGTGATGGCATAATTAAATGGGGTTGGTGGGAGTAGTGATGAAATAATTAGCTGAGACGTTTCTGCTGTATATTGTTGAATGCATGGAAGGCCCTAGTTTTTGCTGAACTGATGTGGTGTTATGTAATGTGTGTTTTGTTTTTGTTGTTTGCTGCGCGGGTTGATCTGGTTTGCTACGGATGAATAATGCGTGGCTGAAAGTTGGTTCGGCGTAGGGGTTAGTGGTTGTGTCGTGTTGGAATGGTGTGTATGGGGTTGATTGGAGGCGTTGAGCGGACTTATTTGGAGTGAAACTAATAAATGTTTAAGGGAATGGTA | |||||||||