mature miRNA: CTACTCCCTCCGTTCCATAAT species: Brachypodium distachyon database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|270459647|gb|GT841406.1|GT841406 CCYP2954.g1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA cl CTACTCCCTCCGTTCCATAAT EST sequence (targeted fragment marked with yellow): ACATAAGGCCCTAGAATCTTTAACAAAGGCTAAGGCATTGAAGCGTGCAGTTGCAATGCAACGCCATGAGGCCCTCAGCCAGCATATAGCTCAATTGGAAAGCAATATGAAGCAGATGAAGTTGATTTGGGTATGGAGGACTACGATGAAGAAGACGAGGATAGCTCAGATTCAGAAGGCGATGACAATACAGCAGCCTCCGCAAGCTATGACGAGGACCAAGAAGATTTTGATGAATCAAGTGATGAAGATGAATACAGAGAGTATGATAATAAAGATTAAGGTGCCGAGATTGAGAGTTAGTGTGCAAAAGAAATTATATGAAATTCTAGGCGATGTTAATCTCCACAGATTATATTGAAGCCCATTGGACGTTCTTGGAAGCCAGGAACCAAGAGGATGTCCGATGTTGCCTTGTATATCTACGTCTCTGTTGTGATGCCGAGCTGTACTCCCTTTGATTTGTTCTTGGCAAAAGGATTGTTGGATATCTGCCGTTGAAGTGTCAACTGTAGGTTCCTCGCAAAAAAAAAAGAAAAAAGAAGTGTCAGCTGTAGGTTGGGCATAAATGGTCCTCCCCCCTTTGTATTTGTTGGACGGAAGGAGTATACCTATCGGTGAGGCAGAATCACGGTATACGCTCCTTCCTGTTGCAACCATATATATACCAGAATAAATTACTCCCTCCATCCCCTATTAAGTTGTGAACAATTAATATGGGACGGAGTGAGTAACTTAGATCAACAGATAGTCAAGGAATGGTTGTTCGG | |||||||||
gi|270449166|gb|GT829500.1|GT829500 CCYO12160.g1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cD CTACTCCCTCCGTTCCATAAT EST sequence (targeted fragment marked with yellow): TTCACTATTAAGTGCACTTATACACAGCATCTTGACAAAGTACTGGAGGAAGCTGCTTCTACATTTTATCCTCATATAAAGTTTGTTCGGGTGGAGTGCCCAAAGTATCTGGATTTTGCCTCACAAGGCAAAAGACTGAGTATCCATTTCTTGAAGTATTTTACAACCCAGAACAGGCTGCTAAACCAGGAAAGATAGTCGATCCAAATATCACAAAATATTCTGCAAAAGTTCTACCTTTCAACTACGACCAGAGTGTGTACGGGTTTCGAGAATATTTTAAGAAGTATGGATTCAAGTACTTTGAAACAAGCTAGGTCTATCATCAAGAAGCCCTGCAGACTTAACCGGACCAACTCGCCTGATTTAAATGAACCTTCAGCCTGTACTATGTTTAATCATATCTGCGGAATGCGTAGTTGGATACTTCACTCTTATTATATACTCCCTCCTTTCCATTATTCTTATCTCAAATTTGTCCAAAAATGGATGTATCTGTTACTAAAAAGCGTCTAGATACATGTAATATTTCGACAAGAATTATGGAATGGAGGGAGTAGTAGTATTAGCTTTTGCCATGGCAAATGTTTAGAAAAACTTAGCCAAGATGTCAGCTAGGTTTCCAGTATGCTCAAGACTGAGTAGAACTTTTCTGGGTATTGCATGTTGTTTTCATGGAATCTATGAACTTCAATCTCAAATTCAGTTTAGT | |||||||||
gi|270398183|gb|GT779558.1|GT779558 CCXF13931.g1 CCXF Brachypodium distachyon abiotic + biotic stress pool Brachypodium distachy CTACTCCCTCCGTTCCATAAT EST sequence (targeted fragment marked with yellow): CTCGGCGTCGATGGCTTCTCTGCACTGCCAAAGCACTGCCTTGAGCTGTCTGCTGCTCTCTTCGCTTTTTCTGTGCTCATTAACCTTGTTAGGGACCTACTTCCAAGAAGGTACAGGAAATATGTTCCCCTGCCGATGGCAATGGCTGTGCCGTTCCTTGTTGGTGCCAACTTTGCCATTGACATGTGTGTGGGAAGCTTGACAGTCTTTGCCTGGCACAAAATGAACAGCAAGGAGGCGGCGCCGCTGGTGCCTGCGGTTGCATCTGGTTTTATTTGTGGAGATGGTATATGGATGTTTCCTTCTTCCTTGCTGTCTCTGGCTAAGGTGAACGCGCCAATCTGTATGAATTTCACACCAGGAAGCTAGAGAAATGGGCATAATCTCATGGATGGTGAGCTGGACGTGCAATGGGAATTTATAAGATTATTATCAGATGAGAAGTGGTCACTGCGCACATATTGTAATTCTTTTACTCTGCTAATGTTCGCCTTAGGGCATTTACAACGCAGAGAAGACAGTCTTATCTTATGCACTCCGCATCATGTAGATAAGAAAATAAAACATACTCCTCCGTTTCACAATTCTCGTCTCAAATTTGTCAAAAATGGATGTATCTATTCCTAAAAAGTGTCTACATACATGTAATATTTCGACAAGAATTATGAAATGGAGGGAGTATTATACAATAAATTATCTGTTAATGGT | |||||||||
gi|78005275|gb|DV473663.1|DV473663 5463_B04_C07ZE5_030 Brachypodium distachyon developing spike EST library Brachypodium distach CTACTCCCTCCGTTCCATAAT |