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mature miRNA: CTCAGGAGAGATGACACCGAC
species: Sorghum bicolor
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|31333568|gb|CD427305.1|CD427305 SA1_18_E12.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor cDNA clone SA1_18_E12_A00 

CTCAGGAGAGATGACACCGAC
|.||.||||||.  |||||||
GGGTTCTCTCTGAGGTGGCTG

EST sequence (targeted fragment marked with yellow):
GATGGCTTTTCTTTCTTTCTTCTCCTCTTATATTATCGTCCCGCCGCCGCCGCTGCCGACGGCGAGCTCCAGCGGCGACTCGAGCCGCCGTCTCAGACCCTAAGCCCTAGTTCCAGCCCACCCAGTCCTTGACCATGGAGGATGCCCTCGCGCCGCCGTCTGTGGCGCCGACCCCCTCCGCCCTCGCTGCCGCTGCCGTCTTCACTCGCCGGCGGTCACACCTCGACAGCGCCTCCTTCCGCACGCTCTCCCGCCTCTTCTCCCACTGCCTCCACATCAACCAGTCGCCCTGCGGCATAGCGCCGCCCGAGCCCGAGCCCGTCGCCGCGGACCCTGTCGGTGGGGACTCCGACGATTCCCCAGAAAGACCTAATGGCGCCGATTGTGATCGGCTGAAGGATGTGGAAATCGAGGCGGCGGATGCGGGAGGCCTTTCGCTCTACGGGGCCGTCTATCAACCGGCCGCGGCGAACCCTACCCTCGACCTGGGTGAGTCTGAGGCGCTGAAGCACGAGGGTGCGGACGCGGTACTTGTCGTAGAAAGCACCTCGGGTATGACCAGAGCCGAGGTGGAAGAATCAGCAGCACTTGTCGTAGAAAGCACCTCGTGTAAGACCAGCGCTGAGGTGGAGGAGTCAGCAGTTGTAGCTGGACTGGTGGCGGTGGAGGACTTATCTTTGAAGTCGGTGGAGTCTCTCTTGGGGACGAAAGTCGATGAATCGGTAGAGGTAGCAGTGGGTGATGATGA


gi|45987591|gb|CN147185.1|CN147185 WOUND1_48_E02.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_48_E02_A002 3', mRNA s 

CTCAGGAGAGATGACACCGAC
||||.|||||| .||| |.||
GAGTTCTCTCTTTTGTTGTTG

EST sequence (targeted fragment marked with yellow):
TTAAATGAATCGGCAAGTCTTTGTGTACAAGTGATTCTGATCAAGGTACAAACTGCTGCTACGGCCTATGGCTGCTGCAATGAATTACACGAGGTGACGAATCTCCAAGAATGTGAATTGAACAAAAGAGGGTACACGGTCTCTCCACAGGCCCTGGTCTCACTAGCTGCCTGAGGGGGTAGGGGAGCAGAGGAAACAATGTGGTGACGGTCAATTATCCGACAAATATGTACCAAGGACCGGATGGCGTGGTATGGTCATAACAGCTGCTGCCTTTTTGTCAATAAGGTTTACTGTGCTTGTTGTTGTTTTCTCTCTTGAGTTGTACTTTGAGTCTTTTACCGCCTAATTGGTACCCATTCATCCTATTGATGGCTGCCTGTGCAGAGGTAGGAGAATCGTAGCTCACAAAACCGAAGCATTTGCTGACACCCGTTGCTTTGTCTACAAACACCTTAGCACTTAGTACTCTACCAAAACTCTGAAAGGCACTGGAAAGCTCTTGGTCACCATAGTCTTGTGGGATATGGTAAATAAATAGATTGGCTCCAGGAGGACCTTCAACCTGTCCACCGGCATTGCTGCTGGGACTAGAAGAAATGGCGGAATTGGCATTCGAATTTGGAACTTTAATTGAAATTGAATTGTGAGAATTTCCAAAAGGACGATTGTTCATGGGACCACCAGGATATGACCCAGGATACTGCATACCAGGGATAGCAGGATAAGGGCTCCCTAACTGCATTGCAAAGGACCTTTGAACTGAACTGGGAGACAGTTCAGGATTGACTCCTCTTATCGAGTTCCCTTGATTA


gi|34512160|gb|CF483291.1|CF483291 POL1_21_F04.b1_A002 Pollen Sorghum bicolor cDNA clone POL1_21_F04_A002 3', mRNA sequence 

CTCAGGAGAGATGACACCGAC
|||||.||||| || ||||||
GAGTCTTCTCTCCT-TGGCTG

EST sequence (targeted fragment marked with yellow):
AAAGGATAATTACGCAAGCTGTTTCCTGTAGGTAACTGCTGCATAACGTGTCCAAACGGCCTGGGGCACTATATATATGCAGCTAACCCTCAACTCTAAACCACGATGCGGCAAGGAGCTAGAGATGTAGCAATACCCTATCCCCCACAGCATGCTACGACGGCTTCAACTTTTCTAGTTGCAATATAGGCAAACTGAAACTGTCCCTAGTAGACAGGGTAGCAATGTTGCTAGTTTATTTCCTCAAACTTTGCGGCCTTTCCTGGCAGCATTCAGTTGCTCCAGCAAGTCCTGTATAGTGGAAGATGCGTCCTTCAGCTTCTTCCTCAGGCTCTCCTCTTCTTGGTCTCGTCGGTTCCTCTCTTCTGAGAATATGTCGATCAATGCTTCTTGTTCCTTGGTTGCAGACTCAAATTGTCTTTGCAGATCCTCCACCCTCTCTGTTAAAGACTTATTCTCGTCACGCTCTACCACTAGCTCTTGCAACAACGATTCTTCCACCTTTGATAATCTTTCCTTTAGTGATAAATTTTCATCCCTTAACTGCTTGATAACAGACTCATACTCATCAATAGTATGCAGATCTCTGTTAC