| mature miRNA: CTCCACAGGCTTTCTTGAACTG species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|7550620|gb|AW676947.1|AW676947 DG1_2_D10.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence CTCCACAGGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CCAAGTACTGCGAGAAGCACATGCACCGGGGCAAGAACCGTTCAAGAAAGCCTGTGGAAATGTCCTTGGCCACACCGGCGCCGGCCTCTGCGGTGTCCTCCGCCACAAGCGCCACAGCCGCCGCCGCCGCCGCCACCACCACCACCTCGTCGCCAGCACCGTCCTACCGCCCAGCGCCCACCTCGCACGACGCCTCGCCGTACCACGCGCTGTACGGCGGCGGCAGTCCGTACTCGGCGTCGGCGCGTCCCGCCGGTGGCCCCGGCCCGTACCATCATCCCGCGCAGGTGAGCCCCTTCCACCTCCACCTCGAGACCACCCACCCGCACCCGCCGNCGTCCTACTACTCCGTAGACCAGCGGGACTACGCGTACGGGCACGCCACCAAGGAGGTCGTCGGCGAGCACGCCTTCTTCTCCGATGGCGCGGCCGAG | |||||||||
gi|45951721|gb|CN126498.1|CN126498 RHOH1_17_B09.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_17_B09 CTCCACAGGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): ACTCCTCTCGCTAGTCGCTACTGCCTCCGTCTCTCCACCCTACAGCCTCGTCCCGGCACATCAACTCGCTTACGCTACCACCGCCAGCACACACCCAGGCCGCAGCGCCGCGCTCCGTTCACCTCCTCTTACGCGCGGTGCCCTACCGGCGCGCGGTGTCTGGCTAGAATCTTGGTGGTCGTTCGCAGGGGTAGCCAAGCTATCTAGCTAGCTCGGAAAGCGGCCGGCCGCGCGCGGAGATGATGATGATGAGCGGTCGAGCGGGCGGCGGCGCCACCGCGGGGCGGTACCCGTTCACGGCGTCGCAGTGGCAGGAGCTGGAGCACCAGGCGCTCATCTACAAGTGCCTGGCGTCTGGCAAGCCCATCCCGTCCTACCTCATGCCGCCGCTCCGCCGCATCCTCGACTCCGCCCTCGCCACGTCGCCGTCCCTCGCCTTCCCGCCGCAACCCTCGGTGGGGTGGGGCTGTTTCGGGATGGGCTTCAGCAGGAAGCCCGACGAGGACCCGGAGCCCGGCCGGTGCCGGCGGACGGACGGCAAGAAGTGGCGCTGCTCCAAGGAGGCGTACCCGGACTCCAAGTACTGCAAGAAGCACATGCGCCGGGGCAAGAACCGTTCAAGAAAGCCTGTGGAAATGTCCTTGGCCACACCGGCGCCGGCCTCTGCGGTGTCCTCCGCCACAA | |||||||||
gi|45966330|gb|CN134648.1|CN134648 OX1_27_D03.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_27_D0 CTCCACAGGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): TCTCCACCCTACAGCCTCGTCCCGGCACATCAACTCGCTTACGCTACCACCGCCAGCACACACCCAGGCCGCAGCGCCGCGCTCCGTTCACCTCCTCTTACGCGCGGTGCCCTACCGGCGCGCGGTGTCTGGCTAGAATCTTGGTGGTCGTTCGCAGGGGTAGCCAAGCTATCTAGCTAGCTCGGAAAGCGGCCGGCCGCGCGCGGAGATGATGATGATGAGCGGTCGAGCGGGCGGCGGCGCCACCGCGGGGCGGTACCCGTTCACGGCGTCGCAGTGGCAGGAGCTGGAGCACCAGGCGCTCATCTACAAGTGCCTGGCGTCTGGCAAGCCCATCCCGTCCTACCTCATGCCGCCGCTCCGCCGCATCCTCGACTCCGCCCTCGCCACGTCGCCGTCCCTCGCCTTCCCGCCGCAACCCTCGTTGGGGTGGGGCTGTTTCGGGATGGGCTTCAGCAGGAAGCCCGACGAGGACCCGGAGCCCGGCCGGTGCCGGCGGACGGACGGCAAGAAGTGGCGCTGCTCCAAGGAGGCGTACCCGGACTCCAAGTACTGCGAGAAGCACATGCACCGGGGCAAGAACCGTTCAAGAAAGCCTGTGGAAATGTCCTTGGACACACCGGCGCCGGCCTCTGCGGTGTCCTCCGCCACAAGCGCC | |||||||||
gi|18060345|gb|BM322963.1|BM322963 PIC1_15_G03.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum bicolor cDNA, mRNA sequence CTCCACAGGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GCACGAGGGAGAGAGAGAGAGAGAGGAACAGCTAGCTAGCGAAGAAAGAAAATTGAGATGGAGCTGGTTGTATCCGCAGTTGTAGGTGAACTTGTTAACCGGTTCATGTCCTTCTTATTCAACAAGTACAAAAGTGAAGAGCAGTTGGAGAAGAAGGTGAGAATGCTGCAAGATCTAGTTGTTAGAGCTCATATGATTGTGGAGGAGGCCGAGGCGCGATACATCACCAACTCAAAGATGCTGCTTCAGCTCAAGAAGCTTGTGGAGGTCATGTACCAAGGCTACCTTGTCCTGGACACCAACAGGTACACGACTGTAAACGAGGTCAGCAGCAGCTTCAGTGAGTTGTCCGTCACCACTTATATTAAACGACTTTTTACTTGTGTGGATCATGAGCTTCAGCCTGCACTGGATAATTTGGAATCTCTTCTTTCAAACATGAAAGAGTTTGTATTTCTTCTCCATGGATGCGAACGCATGTTCCGCGGCCCCTATGACTCGTATCTGTACATAGACNACTTCATGTTTGGTCGT | |||||||||