| mature miRNA: CTCCGTCCCAAAATATAAGAC species: Pseudoroegneria spicata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|207463722|gb|FF349202.1|FF349202 BG02016B2C05.f1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CTCCGTCCCAAAATATAAGAC EST sequence (targeted fragment marked with yellow): ATTAGATTCAAATTTTTTAGAAACTTGGTAGCAAAGGTCTATTTTTCTGTTTTGATTTATTTCTCATGTTGAGGAACAATGGACAACAAAAAAAGAGACAGAAGTTCTACAGTGACATGTTTTGTGATGGCAGTAGCTACACTATGCTTGAAACAAAAATTCACACATCAGATACCTTTCTTTATTTTTTTTAAAAAAAATTCTCAGGTCGAAGCTGTTACTGTGCATGCGACTCAGAAGTACTTTGTGACCGCTGCCAAGGATAATACTTGGTGCTTCTATGATATTTCAACTGGGTCTTGCCTCTCACAGGTTGGCGAGGCTTCAGGACAAGAGGGATATACATCTGCGTCTTTCCACCCAGATGGTCTCATCCTTGGAACAGGAACTACTGAAGCTGTTGTCAAAATTTGGGATGTGAAGACTCAGGTTGGTACTGCAATTGTTTTCAGGAATAATTTCAGATGGTCATGCATATGTTGGTGCTTGAAATATACTACCCCCGTCCCAAAATATAAGACGTTTTTGCAGTTCAAATTTGAACTGCAACGTCTTATATTTTGGGACGGAGGTAGTATTTCCTAATGGACATTTTTTTTGTCTGTAGTCCAATGTTGCAAAGTTTGAGGGGCATGCTGGACCTGTCACTGCTATGTCCTTCTCTGAGAATGGTTACTTCCTGGCGACTGCTGCTCTTGATGGTGTCAAGCTTTGGGATCTAAGGAAATTGAGAAATTTTAGGACTTTCTCGCCATATGATTCGGACACGCCGACAAATTCTGTGGAATTTGATTTTAGCGGTACCTATCTTGCTGTTGC | |||||||||
gi|207463723|gb|FF349203.1|FF349203 BG02016B2C05.r1 BG02 - primary and normalized libraries Pseudoroegneria spicata cDNA clone B CTCCGTCCCAAAATATAAGAC EST sequence (targeted fragment marked with yellow): ACCGATTTTNNNNTTTTTTTTTTCCTCTTCAAAACAAATTATATCCTCATTACAAAATTAGTGAAGCCTACAATACAATAACGTCGCGGTCTGTTTACATCGGCGGAAGCCCACGCCATTGCTCCCTGAGGACCCTGCTTTTCCTCGTACGCAACCCATCCATCCACTACCAAAAGAGGGCGCAGGGAGCATCAAACAAGTAAAACCAGGTACACTGCATTTCCTCACTCGGCCGATGGTTTTGCATCATCATCCATTTGATCATCTCCAGGAAGCCCAAATATCCTCAGGTTACGGTCCATAGAGCCGACGGCGATATATTTGGCATCAGTGCCGAACTTCGCAGAGGTCACTTTCCCTGTTCCCGACAAATCTGGTAAGGTCTTGATAAGATTCCATTCGGTCTTGACGTTAGCTACTTGATAAACCCTTATATCTGAACCAGCAACAGCAAGATAGGTACCGCTAAAATCAAATTCCACAGAATTTGTCGGCGTGTCCGAATCATATGGCGAGAAAGTCCTAAAATTTCTCAATTTCCTTAGATCCCAAAGCTTGACACCATCAAGAGCAGCAGTCGCCAGGAAGTAACCATTCTCAGAGAAGGACATAGCAGTGACAGGTCCAGCATGCCCCTCAAACTTTGCAACATTGGACTACAGACAAAAAAAATGTCCATTAGGAAATACTACCTCCGTCCCAAAATATAAGACGTTGCAGTTCAAATTTGAACTGCAAAAACGTCTTATATTTTGGGACGGGGGTAGTATATTTCAAGCACCAACATATGCATGACCATC | |||||||||