| mature miRNA: CTCCGTCCCAAAATATAAGCA species: Trifolium pratense database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|86116819|gb|BB928028.1|BB928028 BB928028 Trifolium pratense leaf Trifolium pratense cDNA clone RCE39179, mRNA sequence CTCCGTCCCAAAATATAAGCA EST sequence (targeted fragment marked with yellow): AGTCATAAAAGATGGTAAACCGGCCATCAAAATTATTTTATTTAAATTAACTATGTGGAATCTATTTTATTTAGCAAGAAGATTCCAGTTACATGTAGGATCATTCATTGTGATCCCTTTATTATTACTATATTACATCGTCCTAAAATATAAGGTAAAAATGAATCAAACAAACTTGATATATTTGATTCAAAATTTGAACTAAATACATTTATTTTTGTTGACCAACTTTTACTTATATTTTGGGACGGATAAAGTACTTCATAATTAACTTTAACGCCAATTTCCTTAAGCAAATGACATTTGGTTGTTGCAATCCAAATTATCACCAGGGTTCACTCCCAATATTTCACAATACCTTTTATAAAACCCGACCCGATCATCAACCCGATTGTCCTGACCATGCCCGCATTCAAGCCCGCCATTGATTATGTTGGTGATCACGCCGTATCCAGGGACCCGCCCGGCTGACCTATCAGCAGCAGTTGGTGTCCATCTTCCAATAATCACATCATGGCTTGATGGCTTGTTTGATTGTGGGGTCATCCAAAACCATAT | |||||||||
gi|86107778|gb|BB918987.1|BB918987 BB918987 Trifolium pratense leaf Trifolium pratense cDNA clone RCE24791, mRNA sequence CTCCGTCCCAAAATATAAGCA EST sequence (targeted fragment marked with yellow): TAAGATATGGCTTCCTTTAGCTTCTTAGTGTTTCTCCTTGTTGCTCTAATTGTTATTCCTCATGGGCTTTCACAGTATGGGTATGGGCCAATTCCCCCTCAGTATTCCGGCCCTGGTCATCCACCCTATAGACTACCAACTGAGAAGTTACCGGCCGGATACTCGCCTTCACAGGAGAAGCCATCGGTGTACAAATCACCGGTGTACAAACCACCAGTAGAGAAACGGAAATCATCACCTACCTCTAGGGGACCAGTTGACAAACCACCGGTTGAGAAGCCGTCTGTCTACAAGCCATCAGCTGAGAAACCAACTTATACGCCATAAGTTGAGAAGCCAACGGTTTATTAGTCTCCATAGGAGACACCAAGTTAATGCCCAAAGTACTCCAGAAGATGATGCCCAAAGTACGATAGCATTAAATATATGCCTATTAAGTACCCTCTGTCCCAAAATATAAGCAAAAAGGGGTCAACAAAAGTGAATGTATTTGGACTAAATTTTAAACCAAATTCATCAACTTTCGTTGACCACTTTTTGCTTATATTTTGGGACAGAGAGAGTAATATATTATA | |||||||||
gi|86111191|gb|BB922400.1|BB922400 BB922400 Trifolium pratense leaf Trifolium pratense cDNA clone RCE29663, mRNA sequence CTCCGTCCCAAAATATAAGCA EST sequence (targeted fragment marked with yellow): TTAGCCACTTGAATTATTTGAGTTCATTTACTAAATCTAATTATTAAGTACATGAGTTTATTGAGGCAATTTAGAAATTAATAATAGTAGAGCTCTTATTCATATATATGTTCTTGCTCCTTTTACATCCACCTTATTGTCTTGGCAACATATAGCAATGTAAACAAAGGTTTGAAATTAGATGCTAATTAAAAACCTAAAATCCTTTGCTTTATTTAAACTATATAATATATTACTCTCTCTGTCCCAAAATATAAGCAAAAAGTGGTCAACGAAAGTTGATGAATTTGGTTTAAAATTTAGTCCAAATACATTCACTTTTGTTGACCCCTTTTTGCTTATATTTTGGGACAGAGGGTACTTAATAGGCATATATTTAATGCTATCGTACTTTGGGCATCATCTTCTGGAGTACTTTGGGCATTAACTTGGTGTCTCCTATGGAGACTAATAAACCGTTGGCTTCTCAACTTATGGCGTATAAGTTGGTTTCTCAGCTGATGGCTTGTAGACAGACGGCTTCTCAACCGGTGGTTTGTCAACTGGTCCCCTAGAGGTAGGTGATGATTTCCGTTT | |||||||||
gi|86107132|gb|BB918341.1|BB918341 BB918341 Trifolium pratense leaf Trifolium pratense cDNA clone RCE24046, mRNA sequence CTCCGTCCCAAAATATAAGCA EST sequence (targeted fragment marked with yellow): CACTAAGATATGGCTTCCTTTAGCTTCTTAGTGTTTCTCCTTGTTGCTCTAATTGTTATTCCTCATGGGCTTTCACAGTATGGGTATGGGCCAATTCCCCCTCAGTATTCCGGCCCTGGTCATCCACCCTATAGACTACCAACTGAGAAGTTACCGGCCGGATACTCGCCTTCACAGGAGAAGCCATCGGTGTACAAACCACCAGTAGAGAAACGGAAATCATCACCTACCTCTAGGGGACCAGTTGACAAACCACCGGTTGAGAAGCCGTCTGTCTACAAGCCATCAGCTGAGAAACCAACTTATACGCCATAAGTTGAGAAGCCAACGGTTTATTAGTCTCCATAGGAGACACCAAGTTAATGCCCAAAGTACTCCAGAAGATGATGCCCAAAGTACGATAGCATTAAATATATGCCTATTAAGTACTCCCTCTGTCCCAAAATATAAGCAAAAAGGGGTCAACAAAAGTGAATATATTTGGACTAAATTTTAAACCAAATTCATCAACTTTCGTTGACCACATTTTGCTTATATTTTGGGACAGAGAGAGTAATATATTATATAGTTTAAATAA | |||||||||
gi|86105211|gb|BB916420.1|BB916420 BB916420 Trifolium pratense leaf Trifolium pratense cDNA clone RCE21836, mRNA sequence CTCCGTCCCAAAATATAAGCA EST sequence (targeted fragment marked with yellow): CTAAGATATGGCTTCCTTTAGCTTCTTAGTGTTTCTCCTTGTTGCTCTAATTGTTATTCCTCATGGGCTTTCACAGTATGGGTATGGGCCAATTCCCCCTCAGTATTCCGGCCCTGGTCATCCACCCTATAGACTACCAACTGAGAAGTTACCGGCCGGATACTCGCCTTCACAGGAGAAGCCATCGGTGTACAAATCACCGGTGTACAAACCACCAGTAGAGAAACGGAAATCATCACCTACCTCTAGGGGACCAGTTGACAAACCACCGGTTGAGAAGCCGTCTGTCTACAAGCCATCAGCTGAGAAACCAACTTATACGCCATAAGTTGAGAAGCCAACGGTTTATTAGTCTCCATAGGAGACACCAAGTTAATGCCCAAAGTACTCCAGAAGATGATGCCCAAAGTACGATAGCATTAAATATATGCCTATTAAGTACCCTCTGTCCCAAAATATAAGCAAAAAGGGGTCAACAAAAGTGAATGTATTTGGACTAAATTTTAAACCAAATTCATCAACTTTCGTTGACCACTTTTTGCTTATATTTTGGGACAGAGAGAGTAATATATTATATAGTT | |||||||||
gi|86112307|gb|BB923516.1|BB923516 BB923516 Trifolium pratense leaf Trifolium pratense cDNA clone RCE31102, mRNA sequence CTCCGTCCCAAAATATAAGCA EST sequence (targeted fragment marked with yellow): TGCTAGTTTTCCTATTATACTCTTAACTATTTATTACTCTCTCTTCTTTCAATTCTTCAATTTATCTTTCCTATACCATTAATGAAGGACAATTTTGTAAACTAACTCATAATTTCTCTTTTTCATACAACATTAATTACATTTCTTAATTTGTGTAATTTGCCCAAAGTGACTTATATTTTGGAACGGAGGGAGTAATATTTTTCTTTTCTACTTTATGTAATAGCATAATAGGTTAGCTAGTGTGAAATTGTGTTTTAGCTGTCATGTGTATCTTGCTGTTATTTCAGTTATGAGAGTAGGCATGACTTTCTCGTTTCAGTCATTAACTGATTGTAGTTTCATATTTCAGACTATCATTCATGCCGGCCTACTCAAAAAGGGTTTATGTTCTGTTCAGGATGAGAGTGCAGGTCAACTTGTCATCCTTGATCATAGAAGGAATAACTGTGAAACGAAACTATAATATCTAAAGTCTTGCTTTTCTTGTTTTACCTTGAACGATAGGCTATGCTATATATTAGTAGGAATTTAGTTTCTTCATGATATTCTCTTGTGCGCATGATAGAGTATACGAGTCA | |||||||||
gi|86107853|gb|BB919062.1|BB919062 BB919062 Trifolium pratense leaf Trifolium pratense cDNA clone RCE24879, mRNA sequence CTCCGTCCCAAAATATAAGCA EST sequence (targeted fragment marked with yellow): GTTCACGAATCACGAGTCACATATTTAAATATGATTCACATGTTACACTAATTAAAACGTACTCCCTCCGTCCCAAAATATAAGCAAAAATTGGTCAATGAAAGTTGATGTATTTGGTTTAAAATTTAGTCCAGATACATTCACTTTTGTTGACCTCCTTTTACTTATATTTTGGGACGGAGTAATAGTTTGTTAGACAATAACAAGATAGTACATGACAAAATAAAGAGAAAATGAGTTTAGAGATAATGGAAAAAAGAAAAACATTTTGTAGTTACTCTAATTCTTTCCTTCTTCACATTAGAAAATGGGGAAATAGTAATTTTTCATATTTCTTTGATGAAGTTACCGTTCTCCTTCTTCTAGGACCCTTAACTTATCATATTCTTCTTAATGACACTTCTTTCATCTTGTCCCTAACTAGCTAGCAACACCAAGCAGCCGACGCGTGACAACGCCTCTTTAGATTATAAATCTGCCTCCATTTTCATCAACGAGGAAGTCTCTGCATTTGTTACCTTTGTTGAAGAAGCGTCTTGGTTTTGGAAAGTGTTGTAGTTT | |||||||||
gi|86096236|gb|BB907445.1|BB907445 BB907445 Trifolium pratense three week-old plant Trifolium pratense cDNA clone RCE05812, mRNA CTCCGTCCCAAAATATAAGCA EST sequence (targeted fragment marked with yellow): AGTCATAAAAGATGGTAAACCGGCCATCAAAATTATTTTATTTAAATTAACTATGTGGAATCTATTTTATTTAGCAAGAAGATTCCAGTTACATGTAGGATCATTCATTGTGATCCCTTTATTATTACTATACTTCCTCCGTCCTAAAATATAAGGTAAAAATGAGTCAAACAAAGTTGATATATTTGATTCAAATATATTTGATTCAAAATTTGAATCAAATACATTTATTTTTGTTGACCAACTTTTACTTATATTTTGGGATGGATGAAGTACTTCATAATTAACTTTAACACCAATTTCCTTAAGCAAATGGCCTTTGGTTGTTGCAATCCAAATTATCACCAGGGTTCACTCCCAATATTTGACAATACCTTTTATAAAACCCGACCCGATCATCAACCCGATTGTCCTGACCATGCCCGCATTCGAGCCCGCCATTGATTATGTTGGTGATCACGCCGTATCCAGGGACCCGCCCGGCTGACCTATCAGCAGCAGTTGGTGTCCATCTTCCAATAATCACATCATGGCTTGATGGCTTGTTTGATTGTGGGGT | |||||||||
gi|86092742|gb|BB903951.1|BB903951 BB903951 Trifolium pratense three week-old plant Trifolium pratense cDNA clone RCE01816, mRNA CTCCGTCCCAAAATATAAGCA EST sequence (targeted fragment marked with yellow): TTAGAATAATAAAAATCACTTCCATAAACCATATTTGTAACAATAATCTTAACAATAATCAGTAAAAATTGGCTAGCATTACATTATCAAAGGTCCAATTTTGGAACTACAAATTTGAGTGGAAATTTCCACACCCCTCAGTATCACTTCAGACGGAAAAAACATGAATTTTGCACTGTACTTCTGTGCGAAGTACTCCCTCCGTCCCAAAATATAAGCAAAAATTGGTCAATGAAAGTTGATGTATTTGGTTTAAAATTTAGTCCAGATACATTCACTTTTGTTGACCTCCTTTTGCTTATATTTTGGGACGGAGTAGTATGTCGTATGAAGAGGAAATTCTTCGAAAGCCGGCTGCAGAGGATCAAATTCGCTCTCCTTGAGACCTGCAAAACTCTCAAGACCATGCTTCAATATGAAATTTACCACACTTTTCTAATGCTTGAATCCACCTAACTGCATCTTCCCTTGAAACCTCATTTTCTTTAGATACAATCTCCTCAAAAGCTGATGTTACATCTGTAGGCATTTTGGTAGAAGAACCTGCTATATAAACAGCAGCTCCTTCGGCTAATAGGTTC | |||||||||
gi|86104428|gb|BB915637.1|BB915637 BB915637 Trifolium pratense leaf Trifolium pratense cDNA clone RCE20940, mRNA sequence CTCCGTCCCAAAATATAAGCA EST sequence (targeted fragment marked with yellow): CTTAATAAGTGTGATTTTTTTATTTTCCCTTATAATTTGGGACGGAGGGAGTACTATATAAAAATAATTCCGACATTTCTTGTGAAGGAAAAATAATATGCTTTTTTTTTATGAATACATGATGGTTTTAAAGGTTTCTTTGGTAGTTTAACCAAACAGCTGGAATCCCTGTTACAACACCGGTTGAGCCATTACCGGCCACCGGAACTCCATTCACCGCCGATAACATCGAATTGGAACAAGAATTTTTTTGGGACACTTTTAGCCTAACAGAAATATTCACAACCCCATTTCTCCTAACTCTATTATCCCACAACCTATAACTTAAAAATTGCAATTGATTTTCATGTACATATCCTCCAATAAAATCTGAAATCGGTATTCTAGCTATTCCAACACTAGTACTACTATTTGCTCTTGTTTTGTACTTCACCTCTATTGTTATGAACCTTGCATGAAATGGCACGTCCATAACTAACTTCTCATTCCATGAAGGGTAACTTCCACCTTTCAAATCAAGTTTAGTGGCGTTCAATTCATTGTTGCTTCCATCGCATTGA | |||||||||
gi|86106938|gb|BB918147.1|BB918147 BB918147 Trifolium pratense leaf Trifolium pratense cDNA clone RCE23832, mRNA sequence CTCCGTCCCAAAATATAAGCA EST sequence (targeted fragment marked with yellow): CTAAGATATGGCTTCCTTTAGCTTCTTAGTGTTTCTCCTTGTTGCTCTAATTGTTATTCCTCATGGGCTTTCACAGTATGGGTATGGGCCAATTCCCCCTCAGTATTCCGGCCCTGGTCATCCACCCTATAGACTACCAACTGAGAAGTTACCGGCCGGATACTCGCCTTCACAGGAGAAGCCATCGGTGTACAAACCACCAGTAGAGAAACGGAAATCATCACCTACCTCTAGGGGACCAGTTGACAAACCACCGGTTGAGAAGCCGTCTGTCTACAAGCCATCAGCTGAGAAACCAACTTATACGCCATAAGTTGAGAAGCCAACGGTTTATTAGTCTCCATAGGAGACACCAAGTTAATGCCCAAAGTACTCCAGAAGATGATGCCCAAAGTACGATAGCATTAAATATATGCCTATTAAGTACTCCCTCTGTCCCAAAATATAAGCAAAAAGGGGTCAACAAAAGTGAATATATTTGGACTAAATTTTAAACCAAATTCATCAACTTTCGTTGACCACATTTTGCTTATATTTTGGGACAGAGAGAGTAATATATTATATAGTTTAAATAAAG | |||||||||
gi|86097299|gb|BB908508.1|BB908508 BB908508 Trifolium pratense three week-old plant Trifolium pratense cDNA clone RCE07129, mRNA CTCCGTCCCAAAATATAAGCA EST sequence (targeted fragment marked with yellow): GTTTTTGTTTTTGTGGTACACGATTATAGGGAAATTCTACAATGTTACTTTTATTATTATAAGTGGCTTATGACAAACACTTACGTATTGTTTGACCTATGTGGCACATGTATTTGGGCCGCCTCTAGTTTTTAATATATTATATGCTAAATTTTTACATCAAACATACTACTCCGTCCCAAAATATAAGCAAAAGGAGGTCAACAAAAGTGAATGTATCTGGACTAAATTTTAAACCAAATACATCAATTTTCATTGACCAATTTTTGCTTATATTTTAGGACGGAGGGAGTATTATACTAGCGTGCCTTTATAATGGGGCAAATAACCCTTTTGGTCTTTGGAACTGTATCTCGATATCACATTCGTCTTTGAATGTATTGAAATTGCAATTAGGTCCCCAAGTTTTTTAGGTAGTCATTCTGGTCTTTATTAAGTTTTTACTTCAAATTAATATATTCAAACCGAGCCACAAACACCCTTATTTATTCATATATAATTTATCAAAGAAGCGTGTTCAATACCTTGATATTATCTATGAATTCGTTTACTAGATCCGGCA | |||||||||
gi|86107887|gb|BB919096.1|BB919096 BB919096 Trifolium pratense leaf Trifolium pratense cDNA clone RCE24919, mRNA sequence CTCCGTCCCAAAATATAAGCA EST sequence (targeted fragment marked with yellow): CACTAAGATATGGCTTCCTTTAGCTTCTTAGTGTTTCTCCTTGTTGCTCTAATTGTTATTCCTCATGGGCTTTCACAGTATGGGTATGGGCCAATTCCCCCTCAGTATTCCGGCCCTGGTCATCCACCCTATAGACTACCAACTGAGAAGTTACCGGCCGGATACTCGCCTTCACAGGAGAAGCCATCGGTGTACAAACCACCAGTAGAGAAACGGAAATCATCACCTACCTCTAGGGGACCAGTTGACAAACCACCGGTTGAGAAGCCGTCTGTCTACAAGCCATCAGCTGAGAAACCAACTTATACGCCATAAGTTGAGAAGCCAACGGTTTATTAGTCTCCATAGGAGACACCAAGTTAATGCCCAAAGTACTCCAGAAGATGATGCCCAAAGTACGATAGCATTAAATATATGCCTATTAAGTACTCCCTCTGTCCCAAAATATAAGCAAAAAGGGGTCAACAAAAGTGAATATATTTGGACTAAATTTTAAACCAAATTCATCAACTTTCGTTGACCACATTTTGCTTATATTTTGGGACAGAGAGAGTAATATATTATATAGTTTAAATAAAGCAA | |||||||||
gi|86107545|gb|BB918754.1|BB918754 BB918754 Trifolium pratense leaf Trifolium pratense cDNA clone RCE24527, mRNA sequence CTCCGTCCCAAAATATAAGCA EST sequence (targeted fragment marked with yellow): CTAAGATATGGCTTCCTTTAGCTTCTTAGTGTTTCTCCTTGTTGCTCTAATTGTTATTCCTCATGGGCTTTCACAGTATGGGTATGGGCCAATTCCCCCTCAGTATTCCGGCCCTGGTCATCCACCCTATAGACTACCAACTGAGAAGTTACCGGCCGGATACTCGCCTTCACAGGAGAAGCCATCGGTGTACAAATCACCGGTGTACAAACCACCAGTAGAGAAACGGAAATCATCACCTACCTCTAGGGGACCAGTTGACAAACCACCGGTTGAGAAGCCGTCTGTCTACAAGCCATCAGCTGAGAAACCAACTTATACGCCATAAGTTGAGAAGCCAACGGTTTATTAGTCTCCATAGGAGACACCAAGTTAATGCCCAAAGTACTCCAGAAGATGATGCCCAAAGTACGATAGCATTAAATATATGCCTATTAAGTACCCTCTGTCCCAAAATATAAGCAAAAAGGGGTCAACAAAAGTGAATGTATTTGGACTAAATTTTAAACCAAATTCATCAACTTTCGTTGACCACTTTTTGCTTATATTTTGGGACAGAGAGAGTAATATATTATATAGT | |||||||||
gi|86116357|gb|BB927566.1|BB927566 BB927566 Trifolium pratense leaf Trifolium pratense cDNA clone RCE38648, mRNA sequence CTCCGTCCCAAAATATAAGCA EST sequence (targeted fragment marked with yellow): TTTAGAAATTAATAATAGTAGAGCTCTTATTCATATATATGTTCTTGCTCCTTTTACATCCACCTTATTGTCTTGGCAACATATAGCAATGTAAACAAAGGTTTGAAATTAGATGCTAATTAAAAACCTAAAATCCTTTGCTTTATTTAAACTATATAATATATTACTCTCTCTGTCCCAAAATATAAGCAAAATGTGGTCAACGAAAGTTGATGAATTTGGTTTAAAATTTAGTCCAAATATATTCACTTTTGTTGACCCCTTTTTGCTTATATTTTGGGACAGAGGGAGTACTTAATAGGCATATATTTAATGCTATCGTACTTTGGGCATCATCTTCTGGAGTACTTTGGGCATTAACTTGGTGTCTCCTATGGAGACTAATAAACCGTTGGCTTCTCAACTTATGGCGTATAAGTTGGTTTCTCAGCTGATGGCTTGTAGACAGACGGCTTCTCAACCGGTGGTTTGTCAACTGGTCCCCTAGAGGTAGGTGATGATTTCCGTTTCTCTACTGGTGGTTTGTACACCGATGGCTTCTCCTGTGAAGGCGAATATCCGGCCGGTAACTTCTCAGT | |||||||||
gi|86108670|gb|BB919879.1|BB919879 BB919879 Trifolium pratense leaf Trifolium pratense cDNA clone RCE25814, mRNA sequence CTCCGTCCCAAAATATAAGCA EST sequence (targeted fragment marked with yellow): TTTTTTTAAAAGATGGTAAACCGGCCATCAAAATTATTTTATTTAAATTAACTATGTGGAATCTATTTTATTTAGCAAGAAGATTCCAGTTACATGTAGGATCATTCATTGTGATCCCTTTATTATTACTATATTACCTCCGTCCTAAAATATAAGGTAAAAATGAATCAAACAAACTTGATATATTTGATTCAAAATTTGAACTAAATACATTTATTTTTGTTGACCAACTTTTGCTTATATTTTGGGACGGATAAAGTACTTCATAATTAACTTTAACGCCAATTTCCTTAAGCAAATGGCCTTTGGTTGTTGCAATCCAAATTATCACTAGGGTTCACTCCCAATATTTGACAATACCTTTTATAAAACCCGACCCGATCATCAACCCGATTGTCCTGACCATGCCCGCATTCGAGCCCGCCATTGATTATGTTGGTGATCACGCCGTATCCAGGGACCCGCCCGGCTGACCTATCAGCAGCAGTTGGTGTCCATCTTCCAATAATCACATCATGGCTTGATGGCTTGTTTGATTGTGGGGTCATCCAAAACCATATGGCTGTCTTGAATGACACG | |||||||||