| mature miRNA: CTCCGTCCCTAAATATAACAA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88218997|gb|CI220557.1|CI220557 CI220557 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft CTCCGTCCCTAAATATAACAA EST sequence (targeted fragment marked with yellow): TTTTTTTTATCAAACTTGGAATAAAACCAAAACAACTTCCATTCTGAGATGTAGGGAGTGCTATTAACCTTCCTAATACATTACATGGACAGGATAGTAATCTACTACTAGTACTCCCTCCGTCCCAAAATATAAGTATTTTTAGCTATGAATCTGGATAACTGTGCGTTCAGATTCATAGCCAAAAGTTGTTATATTTAGGGACGGAGGTAGTAGTTAATTGCCAAACAGGATATATATAGGTTGGAAATGCAACTATCAAACTGGAACTTTTGAGATAAAGCAATTATCAAACACAAGACATCATTTTGTCTCACAGACCTCTGCTCTGCTCATCAAAGAACCCCTCTTGTTCACTTGAAGCATACTAGCCTTCTTCTGGACATGACACCCTTGCAGAAGAAAGAACATCCGCGCCGTGTTTTCTTCTTCTTCCTGTCCCTCTGCTTTGTTGGAGGCTTGATTACTACCTTGATGGCAGCATCAAACACAGCTTTTACATTCTGCTGTGTCTTTGAGCTGCATTCGATGTAACACGTTGCGCCAATGT | |||||||||
gi|88729954|gb|CI753421.1|CI753421 CI753421 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro CTCCGTCCCTAAATATAACAA EST sequence (targeted fragment marked with yellow): TTCCTCCGTCCCTAAATATTTGACACCATTGATTTTTTTAAACATGTTTGACCGTTCGTCTTATTCAAAAAAATTAAGTAATTAATAATTTTTTTCTATCATTTGATTCATTATTAAATATATTTTTCCGTATATATATAGTTTTCATATTTCACAAAAGTTTTTAAATAAGACGAATGGTCAAAAATGTTTTAAAAAGTCAACAACGTCATATATTTAGGGACGGAGGAAGTATATGTTAGTACATCCGTCCCGAAATAATTTTATTTTCTCTTGTCCCATAAATACAAAAGCAAAAAGACTGTAATACCCCTCCACCCAACCAAATCCTAATAGAATTGTTCCATTTTTATCTANTTCCAA | |||||||||
gi|88663612|gb|CI483862.1|CI483862 CI483862 Oryza sativa (japonica cultivar-group) 4.5 leaf-stage leaf Oryza sativa Japonica Gro CTCCGTCCCTAAATATAACAA EST sequence (targeted fragment marked with yellow): AGCAATTTTCTCCACTTTATTTCGTTTTCTTTTCACTGTCCTTAATTTCTATTCCCTCCGTCTCTAAATATAAGGGATTTTAATTAGACAGCCAAAATCACTTATATTTAGGGACGGAGGAGAGTAGTAACTAACACAAAACGTTACACAAATGCAGCATTGCAGCCCCTAATTAATCAGATCCAAAGCTATTATATCCACTAATACAGAGTAAGCGATCACCTAGTAGCAGGCTAGCTAGCCAAGTACATCAATTTACTTCAACGGATTACCACTAATTAATCTCACACTCAAATACTCCTANTACATGTACCAACTCGAACATTTTCTCTCTCTTTCATTTTTTTTCTCTCATTTTGTTGCCGCGCTTCTTAATTAGCATCTCCTCCGGCGTTTCATGGT | |||||||||
gi|88506920|gb|CI434426.1|CI434426 CI434426 Oryza sativa (japonica cultivar-group) leaf of seedling 10mM H2O2 (10min), 24hr afte CTCCGTCCCTAAATATAACAA EST sequence (targeted fragment marked with yellow): GATTTGCAATTTTCTCCACTTTATTTCGTTTTCTTTTCACTGTCCTTAATTTCTATTCCCTCCGTCTCTAAATATAAGGGATTTTAATTAGACAGCCAAAATCACTTATATTTAGGGACGGAGGAGAGTAGTAACCTAACACAAAACGTTACANAAATGCAGCATTGCAGCCCCTAATTAATCAGATTCAAAGCCTATTATATCCANTAATACAGAGTAAGCGATCACCTAGTAGCAGGCTAGCTAGCCAAGTACATCAATTTACTTCAACGGATTACCACTAATTAATCTCACACTCAAATACTCCTANTACATGTACCACCTCGAACATTTTCTCTCTCTTTCATTTTTTTTCTCTCATTTTGTTGCCGCGCTTCTTAATTAGCATCTCCTCCGGCGTTTCATGGTATGGTCACCGGCGGCGGNGGNGGCGAACCAACGGAAGGG | |||||||||
gi|88764810|gb|CI773928.1|CI773928 CI773928 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro CTCCGTCCCTAAATATAACAA EST sequence (targeted fragment marked with yellow): TTGTATCATATATATGACAGATAGAGTAAACATTAAAATGCCACTATTGTACTCTCTCTGTCACATGTCAACTCGATATAATCTAATACTCCCTCTGTTCCTAAATATAAAAGATTTTGGTGAGATGTGACATATACTAATACAACGAATCTAAATAGACTTATGTCATATGAAACCAAAATCCCTTATATTTAGGGACGGAGGGAGTACTACATATATGGACAGATCTGTCTACATACATAGGCTATGTTTAGATCCAGGGGTGAAAAGTTTTAGTGTGTCACATCGGATATACGGACACACGTTTGAAGTATTAAACGTATACTAATAACAAAACAAATTACAAATTTGCTGTAAACTGCGAGACGAATTTATTAAGCCTAATT | |||||||||
gi|88966843|gb|CI379728.1|CI379728 CI379728 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone CTCCGTCCCTAAATATAACAA EST sequence (targeted fragment marked with yellow): GAGGGGAAAAGAAGATGAATAACTGAACAAGGAGTAATTTACATCGTAAAATGGGGAATGCCCCAAAGATACATGTAGAGTAGTATAAAATAATTAAATTTATGAATATGGTGGTAAAGGAAATGGAACACAACCCTGGGCGCCTACCCATCTGGGTTCCTAAATCTTATTTTATAGTGCACTACGGTCACTTGATAGATTTTGGTTGGATATGGCATATCCTATTACAACGAATGTGGACATGAAGTCTGTCCAAATTCGTGGTATTAGGATGTGTCAGATCAAACCAAAATTCTTTATATGTAGGGGCGGAGGGAATACCAAGTGCCTAAATCTTATTTAATACCAAATATGACCAACTTACACTCGGATAAAAAAAAATATCATGGCCTGTTTTAACGAGTTACTCTCATGCNAAAGATGACATAGTCATCCCGACAAATTTAAAACAGCAAATATAGTGGACTAATGTGACCAACGTATTTCCATCGTGAAGAACGATAAGTTCAAAATACGAGGTTGGCGATGAGAAATGCGG | |||||||||
gi|88457100|gb|CI531699.1|CI531699 CI531699 Oryza sativa (japonica cultivar-group) 1 day after pollination pistil Oryza sativa J CTCCGTCCCTAAATATAACAA EST sequence (targeted fragment marked with yellow): GTTTTTTTTTTTTTAAAATACTTGAGGTTATGAAAAACAAAAAAGAGTGATTGATAATAAGACATTGGATATAGTGGTTCCACATGCGGACGTGCTGCACACGATGAAAAGAGGGGATGAAAGATTTGTACTCCATCCGTCCCTAAATATAAAAGATTTTAGTTGAATGTGATATATCCTATTACAACGAATTTGAACAGGCTCAATTCCTTAAATTTAGGGATGGAGGGAGTATATAGTACTAGAGATAAGGAAGATGATTATATACCCTAAATANCCGGCATATATGCAAAGGATGCAAATAGCNAACTCCAAGTTCAGCCATGCGCCCTATGCCTAAGTATTCATCAGTAAACTCTAAAGCCTNACATCTGCAGGCCGAGGACCAAGGATGCTCTTCGCACG | |||||||||
gi|38470647|gb|CF954778.1|CF954778 461rsiceb_0482.y1 Oryza sativa cv. PA64s leaf cDNA library Oryza sativa Indica Group cDNA 5', CTCCGTCCCTAAATATAACAA EST sequence (targeted fragment marked with yellow): GCACGAGGTCCAATTATAATTTTGTATCCTCTCAGAATTTTTTTTCTTTGGCCGCTGTACACGATTGCGTTCACACGGAGAGAGAGGGCACCGCTCAGTCAGACATTTACGGATGAAAAATTTGTGACGAAAGGAAAAATACTAATCTTTTAGTTAGTTAAGATGTGACACATGCTATAGGCTATATTCGTTGAACTAGGATGTATCATATCTCACTAAAATCTCTTATATTTAGGGACGGAGGGAGTATAACTTGATGAAGGAATTATCAACATTATTGCTTTGAAACTGTTGAATACAAAATGAAATCCTAGAATTTGCGTATGTCTGATTAGAAAATGTGACAATGCCAATGTAGCAGGTAATTTCTTTTAGAAGGTAATTTCTTTTAGAGTAAATTTCACAAAACCACATCTCTACCCATACTAATACTACATTCAGTGGTTCAACAACAGTGGCCGCATTAAGGTAACACAATTGGTGAGATTAAATTTTGCAATTGGTTATTACTGTGATTTTGTTGATTGCGATGTCGTACCTATGCATGCTTGCTCCTTGCTCCTTGCTGTTGGGTAGACTTTCAC | |||||||||
gi|89188746|gb|CI115995.1|CI115995 CI115995 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo CTCCGTCCCTAAATATAACAA EST sequence (targeted fragment marked with yellow): TTTTTTAATAACTGAACAAGGAGTAATTTACATCGTAAAATGGGGAATGCCCCAAAGATACATGTAGAGTAGTATAAAATAATTAAATTTATGAATATGGTGGTAAAGGAAATGGAACACAACCTGTGCGCTAACCATCTGGGTTCCTAAATCTTATTTTATACTCCCTCCGTCCCTTATAGATTTTGCTTGGATATGGCATATCCTATTACAACGAATGTGGACATGAAGTCTGTCCAAATTCGTTGTATTAGGATGTGTCACATTCAACCAAAATTCTTTATATTTAGGGGCGGAGGGAATACCAAGTTCCTAAATCTTATTTTATACCAAATATTAGAACTTACACTTGGACAAAAAAAATATATCATTGTCTGTTTTAACGAGTTCCTCTCATTCCAAAGATGACATAGTCATCCTCTACAAAAATTTTAAACAAAAATATAATTGAACTCATGTGACCAATATATTTTCCATCCATGAAGAACGATAAGTTCCAAAAATAACCAA | |||||||||