| mature miRNA: CTCCGTTCCTAAATATAAGTC species: Triticum aestivum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|143801416|gb|CJ967337.1|CJ967337 CJ967337 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul7b11 CTCCGTTCCTAAATATAAGTC EST sequence (targeted fragment marked with yellow): GCTTTCATCGTGTCCAAGCTCGCGCGGGCAGCCCTCGCATCCCGCCCCGTTGGAGATATTGCTGGTGGCATCTCCCCGTGTCTCTCCCGGCTCTATCTGGCGGCTGGTACCAGCCGTCGCATGTTTGCAGCTGCAGGCGGTCCCAAGTCAAAAGAAGCACCCCGAATATTTCCCCTTGTTGATGAGAATTCCATTAAGTCGAAGGAATCCCTATGGGCCTTGTATGAATGCTGGTGCAAGTATTGGGGGGTATCCCGTGACCGTGAAGAGATGGTCCGCCGGTTCAAGTCATTTGAGGCTACTGCACAGTGGGTTTACAAAATGAACAACTCTGGGTGTTCGCAAGTGTCTCAACTGGGCCCGCATGCAGATTTTTCAGAGAGTGAGTTTGCTGAGGTGGTGTTTCCTCCACTTCCTGATGATGATGATGAAGACATAAAAGAGATGGTGCCAGGTCAAGATTTGGGCCAGGAGCTTGAGGAGCCCTTAAATAATTAATTCGAGAAATTATGAACTTGTCTTACTCCATCCGTTCCCAAATATAAGTCTTTCTAGAGATTCAACAAGTGACTACATACGGAGCAAAATGAGTGAATCTGCACTCTAAAATATGTCTACATGCATACGTATGTTGTAGTCCATTTGAAATGTCTAAAAAGACTTATATGTAGGAACGGATGAGTATTTGGTTGTGGTAATACTGTGGTACTGGGATTATTGTTGTTGTCTGGT | |||||||||
gi|222362762|gb|GH726197.1|GH726197 G118.122A23R010927 G118 Triticum aestivum cDNA clone G118122A23, mRNA sequence CTCCGTTCCTAAATATAAGTC EST sequence (targeted fragment marked with yellow): GATCTCAAGAAGCGGGCCGCCCGTTGTTTTGTTTTTGTTTTTTAGAAATAAACATAAAGATATCGCTGGATTTTCTGTTTCTCTTTCGTCACATAAGAGTTAATTTAAAAGGACTGGCACAACCACTCCAACTTCAGGCTGATTCCATTACCGGGGCCAGCATCCAGCAAATCCTACAACTACAACTAGATGTCATATTACTAATTACATACGCTCAGGAGACTTTCTAGACTTGTAATACAAAGCTAGTTCATATTTGAAACGACACTTATTTAGGAACGGAGGGGGTAGTTCATATCATAGACTATCTAGACTTCTGATATAAAGCTAGTTCATATCGTTCTCTGGCTCGGAGACGAAATTGGCTTCACTATTCTTGCTTGTAGCGCCATCTTCTCTCATGTTAGTTGCCACGCAGTAGGCGAACAGACCAAAATATCCCAGAGGAACGGTTATAGTGTTAAAATCGTTGAGTCTTCTTGTTCGTCGAAACATGCGCCAATTGGGGTCGAGAGGCCTAGGCTCCACTTGAGCAGCAAGGTGAGTGATGAGCCGATGAGTTGGGATGTCTTCCCAGGACAACTGAGGGTAAAGTTCTGCCCTTCTCACTGCTACGAGCAAATCAAACAACTCTTTCCTTCGTCTTCTTGAATCGCATTTCCCCGGAACGCGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAGNAAACTAAAATAAAAGGGAAGGACAAAGGCCGGTTTCCAAGGGGAAACCGGGGGGCAGGGGATTAAAAATGGGCAAGGCGGG | |||||||||
gi|222366736|gb|GH729461.1|GH729461 G750.102A20R010731 G750 Triticum aestivum cDNA clone G750102A20, mRNA sequence CTCCGTTCCTAAATATAAGTC EST sequence (targeted fragment marked with yellow): GAATCTCTAAAAAGACTTGTATTTAGGAACAGAGGGAGTAGATTCCTACTACAGTAGGCAGCTCCCACTTTCGAACAGATAAGTTGGCAGAAATAAATATTTAAAAAGCACTGCAAGAGAAGGATAATTCAGCGGTACCGAGGTGCCTCCTCTAATTCAGAGTTGCCTACTGTGTTTCTGACGACCCATGTACAAAATTAGACCAGCCCGGGAAGATAGCAACCGAAATCCCCAAAATAAGCTGCAACAACGCAGCAAGTCGTTGGAGCGTATCATGAACGCGACACGGCAGCTGCCACCATCAGCAAGCTTGCAACCTACCACCAATACTAATCAAGCCAGATATCTGTATGTGTTGGCGTTGTCCTTGTCCCGCTCCAGGTAATCCCTCGTGATGAGATCTTCAATCCTCTTCTTGATTGCTTTGAAGTCAGGCTTGAACATGCGGCTGAGCCTGCTCCAACACACTCCGCAAACTAGCCTGTGTATGGGCCCATAACTTTGGCGACTCTTTC | |||||||||
gi|222363920|gb|GH722611.1|GH722611 AZO2.113N17R000000 AZO2 Triticum aestivum cDNA clone AZO2113N17, mRNA sequence CTCCGTTCCTAAATATAAGTC EST sequence (targeted fragment marked with yellow): GGGAATCTCTAAAAAGACTTATATTTAGAAACGGAGGGAGTACAAAGCTGTCCACTTAGGAACTCCCAGTTACACAGTTATTGGCTTCACAACATTTACGGGCTGCAAACCCAATTATTCATCTCCTCTGTCTGCTGCACATCATCTTATCTAGCTGCTCAACCGGGGGTACACGGTCACCTTAATTATTATCTCACATTTTCCATCGATCGATGCATCATGTTCCGATTTAGTACACCATGGATCAGTCCTGCCCTGCTCCCCTACAGCTCACACAAGATACAGCAGTGAACATACAACAACCTTTACACCTCAGTCCTTCTTGCCAATATGCTCATGGCAACTTCGCATCACAGCAAGGAACGCAGGCGCGACGAAGGTAGCATGGACTCTACGACGATGGCCGAAGCACCGACCCCGCCGTTGCATACCCCCGGCAAACCCAAACTTGCCCCTGAACTGCCTAAGAATCCCCGAGCACGGTGACTATGACCCCCGGCACCATGCCACCAAATAGGATGGCCCACGCCAACCGCCCCACAACCTACATCCAAATCCCCAGCGACAACGCCACCACTCCACGACACGCCCATGCAACAACCGGAACGCCTCCACC | |||||||||
gi|143795698|gb|CJ961626.1|CJ961626 CJ961626 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul27a1 CTCCGTTCCTAAATATAAGTC EST sequence (targeted fragment marked with yellow): CTAAATACTCCCTCTGTACCGAAATAATTGTCGCTGGAGTAGCTGCGACAACTATTTCGGTACAGAGGGAGTATAAGTCTTTCTAAAGATTCCAATATGGACTATGTACGGAGCAAAATGAGTGAATCTACACTCTAAACTACGCCTAGGTACTCCATATTGAAATCTCTAGAAAGACTTATATTTAGGAACGGAGGGAGTAGGAGTTTGCACCGGCGGCTGTACTCATATGAGCTTATGTCGGTGGTTATGACTGTTAGACATACTGATGCTTGTCCAAGCT | |||||||||
gi|143793504|gb|CJ959234.1|CJ959234 CJ959234 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul1c09 CTCCGTTCCTAAATATAAGTC EST sequence (targeted fragment marked with yellow): TACATNCGGATGTATATAGNCGTACTTTAGAGTCTAGATTCACNTATTTTGCTCTGTACGTAGTCCGTAGTGAAATCTCTANAAAGACTTATATTTAGGAACGGAGGGAGTAGTAACTTNTTTGGAAGCTATGNGTATCTGAACTTCGTAAGCTNGCCAGACCATGTTTGAGTAGCAGCTCT | |||||||||
gi|164307249|gb|EX982046.1|EX982046 TDF225 wheat Fusarium graminearum inoculated, cDNA-AFLP fragment Triticum aestivum cDNA, mRN CTCCGTTCCTAAATATAAGTC EST sequence (targeted fragment marked with yellow): GTGTAGATTCACTCATTTTGCTCCGTATGTAATTTATAGTGGAATGTTTAGAAAGACTTATATTTAGGTACGGATGAGGTAGTAAAGCTTGCAGTGCACTAATGCTCTTGTAGATGACAAGATGCTACTGC | |||||||||
gi|143798129|gb|CJ964052.1|CJ964052 CJ964052 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul34f1 CTCCGTTCCTAAATATAAGTC EST sequence (targeted fragment marked with yellow): AAGTTCTGATGATGGTGATAATTAGAATATCAAGNTTGACGACGATGATGATTGGAACCAAGAGGAGGAAGTACGTAAGTTTCCATCTATTCATATGGATGTTATCCTCGATGTACTGTGACCAAATATCTGCCGCTAAAACCCACCAAAGAATTAGCAAGAAAATTGATGGTGGGAGCTAGCAATGCCGGCAGTGCCTCCTTTAGGATTACAAAATCGTTAATCCTATCTTCGCTTGCATGTGACTGATGGTGATGCTACACAAGTTCTGAAGGCAGTGCCCTCCCCTTCAGCGGGAGATCTTGCTGGTTCTGCATGGCACAACTGGATTAAATATGCTACAGCAAGCGAAGGAGTTCAACGATGTTGTTGGAATCAAAGGATTCATCCTAACGAAATTAGACAGGACTGCTCGTGTTGGCTGTGTGGTGAGTGTTAATAGACGAACTTGGAGTTCCAGCCAAGTTTGTTGGCGTCGGCGAAGGGGTGAAGATCTCCAACCTTTTGATGCAGAAGCATTTGTTGAAGCCATTTTCCCATAAATTTGACCCAGTTATTAGCGTTTCTCATGTAACAAGATTTTGGCTAACATGCTACTCCCTTCGTTTCTAAATATATGACTTTTTAGGAATTCTAATATGGACTACATACGAAGAAAAATGAGTGAATCTACACTCTAGAATATGTCTACATTCATCTGTATGTAGTCCATATTCAAATCACTAAAAAGACCTATATTTAGGAGTGGAGGGAGTAG | |||||||||
gi|289680650|gb|GD188871.1|GD188871 Tau21-007-F04-A-031.g Triticum aestivum flower heat stress forward subtractive library Triti CTCCGTTCCTAAATATAAGTC EST sequence (targeted fragment marked with yellow): AAGTCATTTGAGGCTACTGCACAGTGGGTTTACAAAATGAACAACTCTGGGTGTTCGCAAGTGTCTCAACTGGGCCCGCATGCAGATTTTTCAGAGAGTGAGTTTGCTGAGGTGGTGTTTCCTCCACTTCCTGATGATGATGATGAAGACATAAAAGAGATGGTGCCAGGTCAAGATTTGGGCCAGGAGCTTGAGGAGCCCTTAAATAATTAATTCGAGAAATTATGAACTTGTCTTACTCCATCCGTTCCCAAATATAAGTCTTTCTAGAGATTCAACAAGTGACTACATACGGAGCAAAATGAGTGAATCTGCACTCTAAAATATGTCTACATGCATACGTATGTTGTAGTCCATTTGAAATGTCTAAAAAGACTTATATGTAGGAACGGA | |||||||||
gi|222369024|gb|GH730392.1|GH730392 G750.115J24R010802 G750 Triticum aestivum cDNA clone G750115J24, mRNA sequence CTCCGTTCCTAAATATAAGTC EST sequence (targeted fragment marked with yellow): CTTTTTTTTTAGTATAAGTTTCTAAATATAAGCGCTTAGAGATTTCAATATGAACTACATACGGACATATATAGACATACTCCATATTTTAGAGTGTAGATTCACACATTTTGGTTAGATCCTAAAAGAATCTTTAAAAGGTCTTATAGTTAGGAACAGAGGGATGAGTCAACGCCCACAAGTTGGGCGATGCTCCGGACTCAGAGGGAGCACAGCACAATGGTCAGTGCTTGAAACCCCCCAACTCCTGCTCAACGCGGATGGTGCCTTCCCCCATTTAAGTTCACGGACGGGAAAACTCCCGACATTCTGGTATGCCTCTTCGAAGGGGAAAACAGAAGAGAGGGAGGGTGCTGGATCGCTAGGGCGGGCACGAGAACAGCAGCGACGCGTTGGTTCCACCAAACCCGAAGGAATTCGAGATGGCGGCCCGTATCGGCATCTTCTTGGCGGCGGTTAGAGGCATGAACGCGCCCTCGAACAGCAGGTCGGGCTGCTCCAGGTTGAGCGTGGGCGGGGCCACT | |||||||||
gi|143801529|gb|CJ967450.1|CJ967450 CJ967450 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul7h16 CTCCGTTCCTAAATATAAGTC EST sequence (targeted fragment marked with yellow): CCCAGGGTAAATACATCTGTGTTGATGGTGATGATCCGTTCCTGCAGAATCAGCAAAGGCGGACGGCCTTGATGCAGTGGCGAGAATTGGGGTTGCTGCTGACCACCGAGGCATCGTCTGCGACCACCGCGTGTTCCGCATAGTCCAGCATTGGCTGCACGCGGGTGAACCTGACCCGTTCTATGACCCACTCAACGACTATGTCGTCATCCCAACCATCTTCGAGGTTGAGAAGCACCACGAGAAACGCGGGGACGTCACCTCGGTCAGGGAGGACTGGGAGATCATCTCCCACACCGACGGCGACGAGGCCAAAAGGCCGGCGGAGCTCCCCGCTATGGTCGGCGCGTTGTCTGCGTCTCGCGAGGGCAAGGATGGCCTGCTGGACGAGGCGCAGGCCACCGTGGTGGTCCACCCGGAGAGCGGAGGCCGGCAGCATGTGGAAGTCAGGGCTGTCGGAGTCAGCCACGGTGGCTAGTTACGGGCTTACTATATACTCCCTCCGTTCCTAAATACTTGTCTTTCTAGGCATTTTAACAAGTGACTACATACGGAGTAAAATGAGTGAATCTACACTCTAAAATATGTCTACATACATCCGTATGTGTTAGTCATTTAAAATGTCTAGAAAGACAAATATTTAGGAACGGAGGGAGTACTTGTACTATATATAACTTAAGTAGCTAGGGCGATTGCACATACTGTAAACCGTTGATGCACATAAGATGTGGCCAGGTAGGGAATGTGTCTCTGTAAATACGGTATACTGCTGCTTGTAAAAATCTGAACTTGGAAGCACAACGTGCACTGGCT | |||||||||
gi|143799086|gb|CJ965007.1|CJ965007 CJ965007 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul37g1 CTCCGTTCCTAAATATAAGTC EST sequence (targeted fragment marked with yellow): GGGTCATGGAGATGCACCTCGCCGGCGAGCTCGTGCCCATGCTCAAGGCCGCCGGCGCGCTCTGGCTCTAGTGAGACAATACTTGCATGCTCGCTCAGTATGCAATGCTAGCCTTTTTGACAGTATATATAGAATAACAAGAGATCTAACAGATGAAAAGCCCAGGTTTTTTAATATCCTGTGCCGGCTCCATGGGGAGAAGAGTTAAACTACCCAGCTAATCAACGGCAAGATAATTCAATACTACCCGGCCCCAACGGTAGTACGATGTACCGTAAAAAATCTCTTTATTAAACACGCATATGCATCAGCTGTCTTCTGGTAATAATATCATTCATCTTTTGTAGCGCTTGGATCTATTGTCCGTGCCCATCATCTTCCTTTGCTTACCAGTTTAACTTCTGCAAATCTTGTTCTTCTTAGAGGAGCGTATGCGTTGGATGTAGCCAAGGCGAACCCAGCTTCTGGTTGTCGAGAAGAGGAAGAAATGAGAGAGACGCGTCTAGGGGAGCGATCACGGCGCTTACTCTACCACAAATCATGTTAGCTGTATTAAGTTAGTGCTTGGCTTAGTGCTAGAATGTACTTCCACCGTATCAAAATAAGTGTCTTAACTTTATACTAATTCTAGTACAAAGTTATACTAAGATTGAGACACTTATTTAGGAATGGAGTGAGTACTAGAAGGTCTACAGACCTCACTCTTAATTATCCACCATCTCTTGATGTGTAACTGAACTGTACGAGT | |||||||||
gi|222368599|gb|GH730001.1|GH730001 G750.110O05R010802 G750 Triticum aestivum cDNA clone G750110O05, mRNA sequence CTCCGTTCCTAAATATAAGTC EST sequence (targeted fragment marked with yellow): CTCTAAAAAGACTTATATTTATGAACGGAGGGAGTAGTTCATACATAATGAAAAGATAGTAACTTGCATCAAGGATTCACATCCATAATAGTTTAACATGATAAGAGAGTACTAACTTGTATTATCATGATATGGTCGACTTGCATATCATTTTTTCGAACCGGGCTGATCCCCTTTCCATTACTTAGAACGGAAATACAACAGTCCGAGAAACCGAAACAAGATAGAAACAGGGAGAAGGGGAGAGCGAGTTCGACGCACTACCAGGAAACCCACCGCGTTTGCCCGTCATCGAAACAAGCGCTATGGGGCGAAAACCTGATAGCACCAAAGGTCTAGTCCTATTACAAAAGGTTTAGAGTCAAACATATCCAGGAAAGATAACAGACACTGCCCGAGGCATCGAAGGCGAACAAGGCGCCGTGGGAGAGGAGCACGTCGACTGGTGAGGTAATCAGCTGGAGCCACAATCTTGAACCGCCGGATCACAGGTCCTCATCAGCATCAGAGTCCCATTGCGAATCATCTCCG | |||||||||
gi|289680608|gb|GD188829.1|GD188829 Tau21-005-H03-A-028.g Triticum aestivum flower heat stress forward subtractive library Triti CTCCGTTCCTAAATATAAGTC EST sequence (targeted fragment marked with yellow): TACTGCACAGTGGGTTTACAAAATGAACAACTCTGGGTGTTCGCAAGTGTCTCAACTGGGCCCGCATGCAGATTTTTCAGAGAGTGAGTTTGCTGAGGTGGTGTTTCCTCCACTTCCTGATGATGATGATGAAGACATAAAAGAGATGGTGCCAGGTCAAGATTTGGGCCAGGAGCTTGAGGAGCCCTTAAATAATTAATTCGAGAAATTATGAACTTGTCTTACTCCATCCGTTCCCAAATATAAGTCTTTCTAGAGATTCAACAAGTGACTACATACGGAGCAAAATGAGTGAATCTGCACTCTAAAATATGTCTACATGCATACGTATGTTGTAGTCCATTTGAAATGTCTAAAAAGACTTATATGTAGGAACGGATGAGTATTTGGTTGTGGTAATACTGT | |||||||||
gi|239862211|gb|GR304596.1|GR304596 WRIS_502 cDNA library of a compatible interaction between stripe rust (Puccinia striiformis) CTCCGTTCCTAAATATAAGTC EST sequence (targeted fragment marked with yellow): CCATTTACGGCCGGGGGCGGCGACCAAGCTGAGGCGGAGGCGACCAAGCTGAGGCGGAGGCGACCAAACTGGGTGCCTGGGCGCGGGGCCGAGCGCCTGGAAACAGGGCCGAGCGCCTGGATGATGGGGACGATGCGTGCTCGTGGAGGAGGGGGACGACGCAAGCTACTGGAGGAGGGGGACGGCGCAAGCTTCTGGAGGAAGACGACGACACGAGCTCCTGGAGGAAGACGACGGCACGAGCTCCTGGAGGATGGGGACGACGCGAGCTCCTGGAGGATGGGGACGACGCGAGCTCCTGAGGGAAGGGGACGGCGCGAGCTCCTGGGGGATGGGGACGGCGCGAGCTCCTGGAGGAGGAAGACGACGCGAATTCAAATCGAGGGTAAAAAGGTCTAATTCGCCATTTGTCGGCTGTGTCCTAAAATTGTAAACGCTCTTATAAAAGTTTACAGAGGGAGTATAAGACGTTTTGGCAGTTCAAATTGTACTGCCAAAACGTCATATATTTAGGAACAGAGGGAGTATTACTTAGCTCTTCCTTGTGTTGCCGAGCTGGTCCGGAATTTGTACTCATTTGTTTATACACTATGTTACAGTAGGTTCTACTATTAGGTTCTGCCGC | |||||||||
gi|222370671|gb|GH732075.1|GH732075 OV.102K22F010202 OV Triticum aestivum cDNA clone OV102K22, mRNA sequence CTCCGTTCCTAAATATAAGTC EST sequence (targeted fragment marked with yellow): TGAATATTCTACACGCTACAATCACCCTCAACTTTTTGTAGCAACATCACTACTAGTTGCACTTGCTGTCCTTGGTGAGTATTTCTGTGCATGCTGCTATGTTTCATATATCTTTTTACACGTTCAGAACTTCAGATCAATCGACCATATCCCTTAGGAACAAGCAGATATTTGATTCATGTAAGCATACTATATTTGCAGCTGTCACATCAAAGACTTGTGTAGGAATGAAACAGTTTTTTAGTTTGTGTATTCTTCTTCTGTTGGCATCCATTATGTTCCATCACAAATAATACCTCCGTTCCTAAATATGAGTCTTTTTAGAGATTTCAATATGGATCACATACAAATGTATATGGACCTAGTTTAGAGTGTAGATTCACTCATTTTGCTCCGTATGTAGCCCATATTGGAATATCTAAAAAGACCTATATTTAGGAACAGAGGGAGTACTTGACTAGTGTTAAAAAACACCTGTGAAAGCACCAAGGTTGTATACTCTTTAATAGTTTAATATCCTTAACATTCACTCTCCTTTTTATTTACCATTGCATTATGTCAATTAAGACAACACAGAAGATAAGCTGCATTATACAAACTAAAAAAACTCGACCAATAGGCATTAGCACCCAGGGTGTTTTTTAATAGAAGCAAAGCACCCTGTGAAGGCTGCACCTCANACGTGGGTGGGCAA | |||||||||