| mature miRNA: CTCGCCGGGGCTGCGTGCCGCCAT species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88314177|gb|CI602509.1|CI602509 CI602509 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone CTCGCCGGGGCTGCGTGCCGCCAT EST sequence (targeted fragment marked with yellow): GATTGCATCGCACCATCAATCAATCGATCGATCGATCGCGTCGCCATCGGCAACGCCACCGCACGCAAGCAGCAAGCAGCTGATCTCTCGCTCGATCGATCGATCTCGGGAAACTTGGATTTATACCCATGGCGCCTCGCGCAGCGCTCTTCCTCGCCGCGCTCCTCTTCGTCGCCATGGTGGTAGTGCCGGTGGCGAGGGCGGCGGAGGAGTCATCCGCCGAGTCCCCCTCCTCCGAGTCCTCCTCCGAGTCGTCGTCGTCGTCCTCCGCCGACGCGCCGGCGGAGGGGTCCGACGGGCCGGCGGCGGCGCCCGGCCCCGGCGAGGGGATCGACGGCCTCTCCGACGACAACGACGACGACTCCTCCAACTGAGCCCGGCCGGCCGGCCGGCCTCGTCGAGCTCG | |||||||||
gi|117226919|gb|CT859420.1|CT859420 CT859420 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD CTCGCCGGGGCTGCGTGCCGCCAT EST sequence (targeted fragment marked with yellow): ATTTTCTTCACTACCCCTCCGCGACACAATCTCCGGCTGCCGCGCTAGTTGATTCCCCCTCGCCGTCGCCGGCCACCTCGCCGCCGCCGCCGCCGCCGCCGCCGGGGAGGTCCCTCCCCACGCCGTTCTCTGCGCCCCCCCAGATCGAGGCCTTGCTCGATCGAAGACCTTAGCCGGCGCAGCCGCGGAGGTGGCGCGCGGTGCCTGATTCCCCACCCAACCAAACCCTAGAGCCCAAATCCGGAGGGCGGGGATTTGCGCCGCCGCGGGCTGGTGCGAGTCTCCTCCAGGGCGTGGTCCCCCTCATGGCGCGGCGGCGCACGTGCGGGTGAGCTCGGGCCACCAGGCCATGGACGAGCTCAACCTATTGCGGCAGCACCAGCACCAGCACCAGCACCACCTGGTGGTGCGCGGCCTCGGCGAGGAGATCGACCTCGAGATCGGCCCGGGCGACGACCCCTCCTTCCCCGGCGCGGCCCTCGTCGGCGTCACCCCCGGCGCGCACGACCCCGCGGACGACCACAAGAGCCTCCTCATCCCGTGCTCGCAGCCCGTCGCCGAGGGGCAGCCGCAGCCGACGCCGCCGCAGGTGGAGGAGCACGACGGGCTGCTACGGCTGCCGGGGCAAACCAAGAAGAAGAAGAAGGTGGTGAAGAAATGGAGGGAGGAGTGGGCGGACACCTACAAGTGGGCCTACGTCGCCGTGCACGACAACAACAGCAGGATCTTCTGCACCGTGTGCAAAGAGTACGGGCGGAAGCCCCGCGGAATCCCTACGGGAACGAGGGGAGCAGGAACCTGCAGATGAGCGCCCTGGAGGAGAACAACACCACCTTGCTGCCCAAGGGAGGCCCTGCCGTTTGGCGAACGGGGGTCCAAAGGAAAAACCCCCAACCCCCCCTGAAAATTCGAAAAGGGCCGGGAAATTTGTCCAAAACCTCTTTTTTCAAAAAACCTGGGGACCCCCCTTTTTACTTTGGAAAAATCTTTTCCCCCAAAAAAAAAAGGGAACCCCCCCCCCTTGGGAAAAGCTTTTAAAAATTTTTTTATTTACACCATGCCTCCATATTTCCCCCAAAAAAAAAGAGGGTGGGGGGGGGTTTTCTCTCCTTTTTTTTCCTCCTTTTGTGGGGAGAAAAAAACCACCCCCCACGGGTGTTTGTTTTTGTTTGTGTGGGGGTGT | |||||||||
gi|88426311|gb|CI574194.1|CI574194 CI574194 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone CTCGCCGGGGCTGCGTGCCGCCAT EST sequence (targeted fragment marked with yellow): GCGGCTGCCGCGCTAGTTGATTCCCCCTCGCCGTCGCCGGCCACCTCGCCGCCGCCGCCGCCGCCGCCGCCGGGGAGGTCCCTCCCCACGCCGTTCTCTGCGCCCCCCCAGATCGAGGCCTTGCTCGATCGAAGACCTTAGCCGGCGCAGCCGCGGAGGTGGCGCGCGGTGCCTGATTCCCCACCCAACCAAACCCTAGAGCCCAAATCCGGAGGGCGGGGATTTGCGCCGCCGCGGGCTGGTGCGAGTCTCCTCCAGGGCGTGGTCCCCCTCATGGCGCGGCGGCGCACGTGCGGGTGAGCTCGGTCCACCAGGCCATGGACGAGCTCAACCTATTGCGGCAGCACCAGCACCAGCACCAGCACCACCTGGTGGTGCGCGGCCTCGGCGAGGAGATCGACCTCGAGATCGG | |||||||||
gi|88844780|gb|CI021355.1|CI021355 CI021355 Oryza sativa (japonica cultivar-group) green shoot Oryza sativa Japonica Group cDNA CTCGCCGGGGCTGCGTGCCGCCAT EST sequence (targeted fragment marked with yellow): TTTCAATTTTACTCCTTTATTTCTTTTCGGATCAAAACGCCACGTCAATGCCACGTGGGATGAGGACCTAGTCAAAGGGAGCCACGTATATGCAACATCATCCAAAACCGGCCACAATACTGTCGAGGGACCTCTTCTGTACAGTTTTATAAGTTAAGGGATGTGTTGTATCCGGTTTTCTGCACTGAGGATGAAAATCAGACTGGGCGACAAATTGAGGGACCTGGAGTGAACTTATTCCTACTACCAACATGTAAAGAGACGACCACGAGAAGGCCCACGCCGAAGAAGGGAGAAGGCCTCAACTCGCCGCGGCTATCGCGCTCGCGCCGAACACGACGAGCTGAGTAGGGGCGGGTTCGCGTACGGCCCCCTTAGCCACCCATCGGCGACGTGGTGGTACGCCGCCTCGGTGAGGTGCACGCCGTCCCAGTTCACGTACGCCGACGGGTCGCCGCACACGGTCACCCCCGCCATGCCGCACTGCGCGCTCATGTTGAACTCGAAGTTGTACCGCCCACCGCCGCTGCCGCAGCAAGCTCTCAGCGCGCCCTCCTCC | |||||||||
gi|88395351|gb|CI611268.1|CI611268 CI611268 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone CTCGCCGGGGCTGCGTGCCGCCAT EST sequence (targeted fragment marked with yellow): GGTCGGAAACTGCCTCCATTTCTTCACTACCCCTCCGCGACACAATCTCCGGCTGCCGCGCTAGTTGATTCCCCCTCGCCGTCGCCGGCCACCTCGCCGCCGCCGCCGCCGCCGCCGCCGGGGAGGTCCCTCCCCACGCCGTTCTCTGCGCCCCCCCAGATCGAGGCCTTGCTCGATCGAAGACCTTAGCCGGCGCAGCCGCGGAGGTGGCGCGCGGTGCCTGATTCCCCACCCAACCAAACCCTAGAGCCCAAATCCGGAGGGCGGGGATTTGCGCCGCCGCGGGCTGGTGCGAGTCTCCTCCAGGGCGTGGTCCCCCTCATGGCGCGGCGGCGCACGTGCGGGTGAGCTCGGGCCACCAGGCCATGGACGAGCTCAACCTATTGCGGCAGCACCAGCACCAGCACCAGCACCACCTGGTGGTGCGCGGCCTCGGCGAGGAGATTG | |||||||||
gi|87041479|gb|CI196101.1|CI196101 CI196101 Oryza sativa (japonica cultivar-group) root of seedlings Oryza sativa Japonica Group CTCGCCGGGGCTGCGTGCCGCCAT EST sequence (targeted fragment marked with yellow): AGCAGTATAGTAATTCATTTCATTAATTCATTCTTAGAACATCTAGCAGCAGTACTTGGCGATCTGGCGGTCCATGTAGGCGGCGTCGGGGGCGTAGTACACGCTGAGCACGGCGCTGAGGACGTAGGCGAAGATGGCGCTGAAGGAGCCGCACACCATGGAGCCCAGCGACGCGACGAGCGCGTACCCCCACTCGGGCGAGTTCATCTTGGCCAGCCGCCAGAAGGAGCTGGCCTGCACGCGGAAGTAGTGCTGCTGCTGCTGCTGCTTGCTGTCGACTCCGAGGCCGAGGCCGGTGATGAAGTCGGCGTCGGAGAGGCGGCGGGAGTAGGGGGAACGGCCGTAGGAGGAGTTACGCGTGATGATGGGCGAGCTGACGGAGTTGCGGGCGCTGGATGGTCGCGCGCTGCTCCGGCGAGCGGCGACGAGCGCGGCCTCGTGCGCCTGCTCCTGCATTCGGATGAGCCTGGCGTAGGTGCCATCCCCGCGGGCCATGAGCTCGTCGTGCGTGCCCACCTCGGAGATGGCCCCGCCCTGGAGGACGGCCACGAGGTCGGCCTTGCGGATGGTGGAGAGGCGGTGCGCGATCACCAGCGTGGTGCGCCCGATCATGAAGCGGTCCAGCGCCTCCTGCACCAGCTTCTCCGACT | |||||||||
gi|88388820|gb|CI592708.1|CI592708 CI592708 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone CTCGCCGGGGCTGCGTGCCGCCAT EST sequence (targeted fragment marked with yellow): TAGTTGATTCCCCCTCGCCGTCGCCGGCCACCTCGCCGCCGCCGCCGCCGCCGCCGCCGGGGAGGTCCCTCCCCACGCCGTTCTCTGCGCCCCCCCAGATCGAGGCCTTGCTCGATTGAAGACCTTAGCCGGCGCAGCCGCGGAGGTGGCGCGCGGTGCCTGATTCCCCACCCAACCAAACCCTAGAGCCCAAATCCGGAGGGTGGGGATTTGCGCCGCCGCGGGCTGGTGCGAGTCTCCTCCAGGGCGTGGTCCCCTCATGGCGCGGCGGCGCACGTGCGGGTGAGCTCGGGCAACCAGGCCATGGACGAGCTCAACCTATTGCGGCAGCACCAGCACCAGCACAAGCACCACCTGGTGGTGCGCGGCCTCGGCGAGGAGATGGAACTGAGATTGGCCGGGG | |||||||||
gi|88417435|gb|CI579096.1|CI579096 CI579096 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone CTCGCCGGGGCTGCGTGCCGCCAT EST sequence (targeted fragment marked with yellow): GAGCGGTGTGGCAGCCGGCAGGAGAGCCATGGTTGGGAGAGAACCGAGGCAGGTGGGGGGGGAGGGAATCGATGACTTCTTCCCCTCCCAAACGCATCCCGTCGTCTCCCCTGCCTCCCCTCTTGCACGGATCCTCCACCGGTGATTGGATCCCGTCCTCTCTCTGGCCGCTAGCGGGGGCGTGGCCTTCCCCAACGTGAGCGGCCAGGGCAGCTCCTCCACTACTTCCGATGGGTGGATCCGGCGGCTGGCGGTGGGGGCGGTGGTGGCGGTGGCAAAGGGCGGATCCGGCGGCAGTTGGTGGTGGTGGCATCGGTGACGGACACCGCCTCTCTTCTGCCTTAGGTGGCGGTAGTGGCGTAGGGTGGATCCGGCGGCGAGGTGGCAGCGTGTGGCCCCGGCGAG | |||||||||
gi|66915727|gb|CX102575.1|CX102575 RECm3575 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl CTCGCCGGGGCTGCGTGCCGCCAT EST sequence (targeted fragment marked with yellow): GGTCGCTGAGGTACGGTCGGAATTCCGGGTCGACCCAGACGTCCGGCACCATCAATCAATCGATCGATCGATCGCGTGCCATCGGCAACGCCACCGCACGCAAGCAGCAAGCAGCTGATCTCTCGCTCGATCGATCGATCTCGGGAAACTTGGATTTATACCCATGGCGCCTCGCGCAGCGCTCTTCCTCGCCGCGCTCCTCTTCGTCGCCATGGTGGTAGTGCCGGTGGCGAGGGCGGCGGAGGAGTCATCCGCCGAGTCCCCCTCCTCCGAGTCGTCGTCGTCGTCCTCCGCCGACGCGCCGGCGGAGGGGCCCGACGGGCCGGCGGCGGCGCCCGGCCCCGGCGAGGGGATCGACGGCCTCTCCGACGACAACGACGACGACTCCTCCAACTGAGCCCGGCCGGCCGGCTGGCCTCGTCGACCTCGCGTCGTGAACAATCCGTTAATTTGATTGATGATCTGGAGCGATTAATAAGGATATATATATATGGTCGTCGTCCTGCGATTTGATTACAACTTGTTCTCTCCTCGTTTTTTTTTTCGGATGAAATTTTCTCATTCTCTAGATTAATTAGTTTGTAATCGCAGCCTATCGTATTTGTGTTCTTTGGACTTCATTTCTCATGTAACAGTTTTTAATTGTTGTCTACTAATTTGAGATATGGACAGGTTATTACAAAAAACAAGACCGAATAGCTAAAAAACACAAGGCGGGCGGCCTAAAGGATCACGCTTACGATCGCGTGTTGCACGCATAGCTCTCTATAGTGGTCCTAATCAGTACTGGCCGGCGTAACACGCCTGCTGGACACCCGGGTCCACTTATGCTGTGAACACCGTTACCTGGTATATAAAGCCCAATCCTCAAATGCCTATAGAATGCCCAACGCACACGTGGGTACGACAT | |||||||||
gi|89190578|gb|CI392431.1|CI392431 CI392431 Oryza sativa (japonica cultivar-group) seed Oryza sativa Japonica Group cDNA clone J CTCGCCGGGGCTGCGTGCCGCCAT EST sequence (targeted fragment marked with yellow): GGCAACAAAATATCAAGACGCTGTTGCAGTTTCTCAATCAAAGTTCCACTGCGGTAAAGATTATTCATGCTGGCTGACAAGTGTAGGTCCACAAAATCTCGCCTCTTACAAAATCACCCATCTAGTCGCCACAATTTACCATTAGCGATACAAACTTAAAACAGACCATAAAATTCTTCTTTATTTCATACAGTTGCACGTCTGCAGCATGAAATAAGGCTCTGGTAAATCCTATTATGCCTGTGCTGGCGCCGCCTCAGTAGTTTTGTCTTCCTTCTTCCCACTAAAAAGCCTGCCGACACCATAAAAAATACCTCCCCACATAGCTAAGCTGGCTAGCACAAATTGCTCTTCCTTCCAGTTAGCCGGGTTCATCGGTTCTTGCCAAATGTTGACCTTCGGAGGCCCATGGTGATATGCAGCGCCGGCGAGGCCACGGCGGGAGA | |||||||||
gi|89165680|gb|CI102770.1|CI102770 CI102770 Oryza sativa (japonica cultivar-group) Panicles one day after flowering Oryza sativa CTCGCCGGGGCTGCGTGCCGCCAT EST sequence (targeted fragment marked with yellow): TTCTGTAGTTCCAAAGAACTGACAAGGTAATAGAGGATAAAGCAAAATAAACATAACGGTTTACAGATCCAGAAGTCACATCAACAATAGGGCATTAAGCAAAAGTACATATAAATATGCTGTCCAACAAGTGAGAATGATTTATTCATCGAAGATAGACTGATTTCTTCATCGAAGATAGACCCTTGATAGCAGGATCATTGCATCATATTACCATTGCCTGAGCTATGATCAACCTTTGAGAAGTGCAGCACCATGATTTGGACATACTGAGCAGAGCATGTTCGTAGCTGCGCATCGCGGCGCGGAGCTCCGGCGAGGAGGAGAGAGTGAGACGCCGGCGGCCGTCCACCCACCACACCATGCGGCAGCGCGCGTCGCGCGAGCCCACCACCGCGGCGAGGGCCTTCCACAGGTACGCGGACACCGCCTGTACCCGCGTCGCCCGCGCCTGCTCGCGTAGCCGGGCGATGTCCGCCGCCTCGATGTAGTACAGGCGCACGCCGA | |||||||||
gi|29660670|gb|CB656945.1|CB656945 OSJNEc11N18.f OSJNEc Oryza sativa Japonica Group cDNA clone OSJNEc11N18 5', mRNA sequence CTCGCCGGGGCTGCGTGCCGCCAT EST sequence (targeted fragment marked with yellow): GGGAGGAGGAGGAGGAGGATGGGTGGTGCTTCGCCGCAATCAACACGCTCGCCGTCGCCATCGCGCTGTACCTCCTCGCCGCCGACCTCACCGGCGTCGGGGGAGGCGGCGGGGTCGTGTCGGCCGTCTTCGTGGCCGTCCTCCTTGTGCTCCTCGCGTCCCCCGCCGCGGTGCCGGCGCACGTGGCGTGGAAGTCCTGGATGAAGACGCGGAAGCTCGCGAACGCCGACGTCGAGGAGGCGGAGGAGTGCGCGTCCGCCCCGCTCCTCGTGGCGAAGGCGACGGCGGCGGCGGCGGCGGAGGCGCGCGGCCCCGGCGAGAAGCCGGTGCTCGGGGAGGAGCACACGATCGCGCAGGCGCTCATGTCGCTGGACTTCTGGCTCATGTTCGCGTCGTTCCTGATGGGCGTCGGCACGGGGCTCGCCGTGATGAACAACCTGGGGCAGATGGGCGTCGCCATGGGCTACTCCGACGTCTCCCTCTTCGTCTCCATGACCAGCATCTGGGGATTCTTCAGCCGCATCGCCTCCGGGACCATCTCCGAGCACTTCATCAAGTTCGTCTCCTTCTCCCATCCCTTTCCCCTTCCATCTCCGTACACAAAATTGAACCGACAAATCCCCAGCGCTTATTATTCCAAAAAAAAAAATCCCCAGCGCTTACTGTCGCCATAGATCCGTAGCTCCGTAGCACGGATTAGGTGTGGCATTTTCTTTCGCTAGAGTTGGAATCT | |||||||||