miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: CTCGTTATCCTAACGAGCCAG
species: Saccharum officinarum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|36021505|gb|CA284265.1|CA284265 SCSFSD1064D03.b SD1 Saccharum hybrid cultivar (mixed) cDNA clone SCSFSD1064D03 3', mRNA seque

CTCGTTATCCTAACGAGCCAG
||||||||||| |||| | ||
GAGCAATAGGACTGCTAGTTC

EST sequence (targeted fragment marked with yellow):
CTGGAGGGCAAACGCCGCCCGTTACGCCTTGTTCTTGGACGTCGCCGGCAGCAAACTTCGAGGAGTTGGCGGCCGATGCGCCGAACAACTGAACGTCGGCGCTGCGTCGTCGACCCGTGAGGGGAGGGTTGTGCCCCGCGTGCAACGTTCGTTCGTGTCGAGGCTGCGTGCGCTTCTGCTTCCTTTAGTAGTTGTGGGCTTGTCGCGTTCTTGCCGTTCTGTTCTGGGCTTTCAGATGAGCTGATGGATGGTCTGTTTAAATGTCATCAGACTGAATAACTATGTGTAGTACTGTAGTACGTTTTATACTCGAAGTACGCCAGGATAAGGCTGGCAAACGAGCCAGCTCGGCTCGGCTCGTTCTTGATCGTCAGGATAACGAGCCAGCTCGGTTCGGCTCGTTATCTTAACGAGCCAGAAAGCCAGCTCGGCTCGGCTCGTTACGAGCTCGAGCTGGCTCGTTAGGCTCGCGAGCCAGGGAAAAAAAAATACAAAATATAATATTTGTATTTATCTAAAGCATAAAAATATTAATAATATAAAAATAATATATTC