| mature miRNA: CTCTGTAAACTAATATAACAG species: Triticum aestivum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|222369227|gb|GH730439.1|GH730439 G750.116A04R010803 G750 Triticum aestivum cDNA clone G750116A04, mRNA sequence CTCTGTAAACTAATATAACAG EST sequence (targeted fragment marked with yellow): AGAAAATCAAGTGTTCATATTGCATGACCAAAACATTCTACCTTACAGTTTCCAGTACAAAATTCACAGAACTCAAGCATGTCATACCATAGTGAGCTACTGAACTTACACTGCAGTAGCCTGTCCAGGAGTGGAAACTCCCCCATGATATTAGCTTTATCGCCGATAAGGCACCTCAGCTGAGCTCACACTGCACTAGCCTCTCCTCTCCGGCACTGGACTTGCTCCTTTGTACTCCCTCCGTAAGTAGTGATCTAAACACTCTTATATTAGTTTACAGAGGGAGTAATAATTTACAGCTGATAATTTGCTTCTTTTTTTAGCTAGCTACCGGTCGGCCAATGTTTCAAACAACTTCCAAAAGGAGCGAAAGCCACCAGGATCTACTGGTTGCTTGCAGAGAAAACTTACTAAGAAACTCAATCCGGTTCCCCAAGCCCATCACTGCCATCCCCTCTTTGGTTGATCGCAGACATACCACCGCGTTTCTTGCCGCCGGAT | |||||||||
gi|239862211|gb|GR304596.1|GR304596 WRIS_502 cDNA library of a compatible interaction between stripe rust (Puccinia striiformis) CTCTGTAAACTAATATAACAG EST sequence (targeted fragment marked with yellow): CCATTTACGGCCGGGGGCGGCGACCAAGCTGAGGCGGAGGCGACCAAGCTGAGGCGGAGGCGACCAAACTGGGTGCCTGGGCGCGGGGCCGAGCGCCTGGAAACAGGGCCGAGCGCCTGGATGATGGGGACGATGCGTGCTCGTGGAGGAGGGGGACGACGCAAGCTACTGGAGGAGGGGGACGGCGCAAGCTTCTGGAGGAAGACGACGACACGAGCTCCTGGAGGAAGACGACGGCACGAGCTCCTGGAGGATGGGGACGACGCGAGCTCCTGGAGGATGGGGACGACGCGAGCTCCTGAGGGAAGGGGACGGCGCGAGCTCCTGGGGGATGGGGACGGCGCGAGCTCCTGGAGGAGGAAGACGACGCGAATTCAAATCGAGGGTAAAAAGGTCTAATTCGCCATTTGTCGGCTGTGTCCTAAAATTGTAAACGCTCTTATAAAAGTTTACAGAGGGAGTATAAGACGTTTTGGCAGTTCAAATTGTACTGCCAAAACGTCATATATTTAGGAACAGAGGGAGTATTACTTAGCTCTTCCTTGTGTTGCCGAGCTGGTCCGGAATTTGTACTCATTTGTTTATACACTATGTTACAGTAGGTTCTACTATTAGGTTCTGCCGC | |||||||||
gi|222364833|gb|GH722489.1|GH722489 AZO2.106H06R010329 AZO2 Triticum aestivum cDNA clone AZO2106H06, mRNA sequence CTCTGTAAACTAATATAACAG EST sequence (targeted fragment marked with yellow): TCTGCAAAATTCTTTGAATCAAAGGAACCACGAAACTGTTTGATGCATGATTTTGCCATTATTACATCCAAGTCTACGGTCTCAAGAGACTTGCCATAGCTACTTAACTAGTACGTACTCCCTCTGTAAACTAATATAAAAACGTTTAAATCATTAAAGTAATGATCTAAATATTTTTATATTAGTTTACGGAGGGAGTATTGGAAGGAGACAGCGTATAACATACACAGGAATGGACACGTTGCATATACTGGTGTGCTATGTTGTGCTTAATTACACTTACGATTTCCTCGGGGAAACCGATGAATATCAGTTGTAGTCTCCGCGTCGCCCTGGCGCGGTCGGCAGCTTCTGCTCCTGGACGATGAGTCGCGCCGGGAGCGGCCGGCCGGTGCCAGAGCCTCCGCAGCTGCGGCACCGCTTGCGGCCGGACCCAAAGCACGTCCCGCAGCCGACGTCGCCGTCGGACCAGCAGGCTGCAGAGGCACTCCTCCCGGCCGGTGCCGCTGCACCGTGGAGCAACGGGGACGAGCGTCCCCATCTGGACGACGCCGGCAGCCCGCCGCCCGAACCCCGGGCTCGCCAACGCAACGCCCGACAGCATCACGAACACCCACCGAAGAGATCACGACGGGACGAAAACATCCCCGCCGAAAAACATTCCAAGAACCTTCCCGGAAACGGCCAACCACAACACGGCACGCCACGAAACCCGACCACCAGGAAAGCGATGCTGCACAATCGCCCACCAAAAGCTCACAGCTGTACTGACAACCACCAAAAACACGGCACACCAGACACCGACCGACCTGCAACAACACACCCAAACACACCAAAAACAAGACCACAACCCTCCCGTCACCGAACCAACACCCAAACAACCAAAAAAGAACAAAGCACACAC | |||||||||
gi|222360598|gb|GH721625.1|GH721625 AZO2.104N21F010112 AZO2 Triticum aestivum cDNA clone AZO2104N21, mRNA sequence CTCTGTAAACTAATATAACAG EST sequence (targeted fragment marked with yellow): AGGGATTCAAGGTCTTCCTTCTCTCCGGGAGGGACGAGGAGACTCTGGGCTCCTGCACGTCCCAGAATCTAGAGTCGGAGGGGTTCTCAGGGTACGAGAGGCTCATGATGAGAACTCCCGAGTACCGAGGGCAGAGCTCGTCGCTGTTCAAGTCGGCGATGAGGAAGCAGCTGGTGGACGAGGGATACAGGATCCGCGGCAACCTCGGGGATCAGTGGAGCGACTTGCAGGGCGAAAACGTCGGCGACCGCGTGTTCAAGATACCAAACCCCATGTACTTCGTCCCGTGAAAACACATGGGTCGCCGGCGGCCGGCTGCCGGTGTGCTCGCTGGCCTGCCTGCCTGATCGACTAATTCGTAGGCCGTGTAAACAACGGCCGATATGCGGCAAAACAAGCATAGTACTCCCTCCGTAAACTAATATAAGAATGTTTAGAATACTAAAATAGTGATCTAAACGCTCTTATATTAGTTTACAGAGGGAGTAGAACGTAAATCAAACACTCGAATTGAAGACACATTTTCCTGCCNCTNNAGNNNANNNNNNGNNAANNNTTTNTT | |||||||||
gi|222363610|gb|GH722925.1|GH722925 AZO3.101E11R011123 AZO3 Triticum aestivum cDNA clone AZO3101E11, mRNA sequence CTCTGTAAACTAATATAACAG EST sequence (targeted fragment marked with yellow): AGCAGAATAATTCACATTCCTCTCATAGATATTATCAGAAGTTCAGCACTGTACTTCCACATACAGTACAATAGAAGGGGGTACTTTCTCTGAATAATTCCAGAGAAATAACCTACACCTGGTGCTGTCCAATGAATGGGTGGATATACAACAATGGTGGGGAATGGATGCATGCGGTGGATCCAATTATACACAGGGAAACAACTACAAATCTGCACACATACATACTCCCTCTGTAAATTAATATAAGAGCGTTTAGATTACTATTTTAGTATTCTAAACACTCTTATATTAGTTTACGGAGGGAGTACTACATAGCGCACACGATCATATACACTAGAAATCAGCAATGACATTGTAGCTCTACGGTTTTACTTGGCGAGGATGGTGGCGCCGCAGGCGGCCCCGGCGTGCTTCCCTTCGGCAAACACCAGGTTCCCCCTCACGAACGTCGACAGGACCTTGCCGGATAGCTCCTTCCCTAGGTAAGCCGAGATGTTCCGGTGTTTGTGATATACAGCATGGGTGTCATCGAGGTGGAACTGCGCCTCGGGTTTCCACACCACAATGTCGGCATGGTACCCCGGCAGAATAGACCCCTTGTTCTTCTGCCCCGCGAGCTCAGCGGGCTTCTCGCTCCACCATGAGGCTAGCTGGTTCAGGGTGATGCATACTTTTTCCCATGTGACCATGTTACTGGGAGGACAACTGAGAGATGAAATACCTCCCAGCCTTCATGAAATGCCT | |||||||||
gi|222367346|gb|GH731869.1|GH731869 OV.002F24F010109 OV Triticum aestivum cDNA clone OV002F24, mRNA sequence CTCTGTAAACTAATATAACAG EST sequence (targeted fragment marked with yellow): AGCGTGAGGGGCTGGCCATCCTCGCGCAGCCGGTTGAAAGGGGGCTTCGATCCCGTCTGATGCAGTTATTCCTGGGGTTCCCGTATAAGCGCTATCTACGGTGCCTCAGCTCAGCCTACGTACGGCGTCGCCCATGGATCCTCATGTCATTTCCAAGGCGATCACAAGGAAATCTTGTGTTGGGGTACTAAGTACTTACAGGCCAAATGTATATGTTGGAATGCATGCTGGGTGCTTCAGATTGGTGATATCTTGCTCTTTATAACAGGCTATTTCCAATGATTTTTGTCTTAGTCGTCTAGGACATGCTGGAACTATCTATGCCACTTCACAGTGCTAGCATCAGTAGTTTTGATGTTGTGAACTTACTCATCTCACAAACATTAGGCATAGAAATGTATTTTTTTCTCTCTTATTAGTTTAGTGCATATGTCCAATGTAAACCAACTGACAATGGCTTTGCCACTCTTAAGTAGAAATTCACCTCAGCTAGGTGAAAGGGCCATAGGCGTCTAGTTATGCTGGATTTGCTTTTAAAGCATCGATATAGGTAATCTAAGCGACTTGTTGCTGAAGCTAACTTCACAATGTGGGGTGGTCAACAAAGCCTTATATTAGTGATCTAAACGCCTTATATTAGTTTACGGAGGGAGTACTCCCTCCATCTCACAATATAAGATGTTNTTGCAAGCTATGTTAGCTTGCAAAAACGTCT | |||||||||
gi|143795767|gb|CJ961695.1|CJ961695 CJ961695 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul27e1 CTCTGTAAACTAATATAACAG EST sequence (targeted fragment marked with yellow): GTGGGAGAAGCGGTCGAATTTGAAGGAAATCTGCAGCAGCAAAGGAGAGATCATTCATAAGGTCTCACAGATCACTGATCTACGCCGGCCGGTTGTGGTTTATCTTGCTGTAGCCGACAGCCTTTTAGAAGATGATTCAGTAACCAGTGGTTGGAGAGTCGGTATGATTGCCTATGAGAAGAAAAAACTTGGAGTTACTGACCTATACAAGAGGCAGCCTTATCTTATAAAGTCTGCCATTGACTTTGAGGTGTGTGCGAGAGCAGATGTGTTTGTTGGCAATAGCTTCTCAACATTTTCCAACCTTGTAGTTTTGTCTAGAACAGAAAGGATGTTTAAGCTGGGGGTGGAAAGCTCATGTGGCGAGGATGTTGGGCTGTCGTCATACGCGTACAATGTCATCGGAGATGATGGCGGGCCTCAAAGATGGATGACAGATATGTTGGACACAAGCCTTCAGCGCATAAGCTACGGAACAAATAACATCTCCTGCCACTGACAGTTGGTTGACACGCATAACATCTGACTGAAGCACAATGGAACGCAGGAACATAGTTTTTGGCCGAATCTTATCTAGAAACTAGCTGCTCGACGGTACTTTCCATGCTAGAATCTGGACAGCCACACTGACATGCCAGCACTGATGAAATGAGTTTGGCCAAGAGCTGTATGTACTTTGTGAGTGTGTACAAAAGTTCTTTCCTGAGCCTGTTTTTTAGTTTGCAGAGCTAGACC | |||||||||
gi|222364262|gb|GH724102.1|GH724102 G468.104M08F010809 G468 Triticum aestivum cDNA clone G468104M08, mRNA sequence CTCTGTAAACTAATATAACAG EST sequence (targeted fragment marked with yellow): CCACGCGTCCGAGGACGTCGAGCACTAGATTGTTTTTAATCTCTCACTGCCTTGGTAATTACTACTCCCTCTGTAAACTAATGTAAGAGTGTTTAGATAACTAAAGTAATGATCTAAACGCTCTTATATTAGTTTACGGAGGGAGTACTCTCCGTCCGGAAATACTTGTCATCAAAATGAATAAAAGGAGATGTATCTAGATGAATATTAGCTCTAGATACATCCCTTTTTATCCATTTTGATGGCCAGTATTTTCGGACGGAGGGAGTATAAGTCTGGATCCCTAAGCCACCACTCCACTTTTGACACCAAGAAAGCGGAATAATGTAAAGGTTCTTCTTTGCTCTTTTGTTGGATGGCTTGTCGTAATAATCCTGGGAACTGGTAATGGTTTTTATTTCAGTTTGTAATCTATACAACTTCTGGTGTGGCGAGTATACCACCTAACTTTTGTCTTTGTTATTTTTAAAGTAGAAATCGAGAGATGTAAATG | |||||||||
gi|143796709|gb|CJ962632.1|CJ962632 CJ962632 Y. Ogihara unpublished cDNA library, whchul Triticum aestivum cDNA clone whchul2h06 CTCTGTAAACTAATATAACAG EST sequence (targeted fragment marked with yellow): CTCAGCACGGAGGCCCTCCTCAAGCAGGTCGACTACCTGATCCGCTCCAAGTGGGTGCCTTGCCTCGAGTTCAGCAAGGTTGGGTTCATCTTCCGTGAGCACAACGCATCCCCTGGGTACTATGATGGCCGGTACTGGACAATGTGGAAGCTGCCTATGTTCGGGTGCACCGACGCCACACAGGTGATCAACGAGGTGGAGGAGGTCAAGAAGGAGTACCCTGACGCGTATGTCCGCATCATCGGATTCGACAACATGCGCCAGGTGCAGTGCGTCAGCTTCATCGCCTTCAAGCCACCGGGCTGCGAGGAGTCCGGCAAGGCCTAAACAGCTCACTCACGACAGGCCATATATAAAGTGCCATTGCAGTTTTGTCAACTCTGACATTGCTTTGGGTTTTCCTTCTCCATTTATCTTTCTTATTTGTTCCTAAGAATATGTGTATGTCCATGTTCATGTACCAACATGGCTCGAGAAAGCATGCTCGTATGAGAATGCTATCGGTGGCTATGTATATGAACGGACGCATAATATTATACAATATGTCGACTATATACGTTTTAATGGTAACCAATGGAAAATATCTCCACCACCGTGCTTATTACTTCCTCTGTAAATTAATATAGAGCGTTTCGATCACTGCTTTAGTGATCTAAACGCTCTTATGTTAGTTTACAGAGGGGATACTTTTTATTAATAGTGGACGGTTGGACGTTGTCTTAGTTTGTATCCCTGAAATGTATGGT | |||||||||