miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: CTCTTGATCCCAAGTTCTTACCACT
species: Populus trichocarpa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|73873423|gb|DT476161.1|DT476161 WS01228.B21_I21 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01228_I21 3', mRNA sequence 

CTCTTGATCCCAAGTTCTTACCACT
|||||| |||||||.| ||| ||||
GAGAACCAGGGTTCGAAAATAGTGA

EST sequence (targeted fragment marked with yellow):
AGATGCCACATTATCTGGAGAATTGAGGAAGTGAAGGGGAAAGTGAAGAAAGAAGAAGAGCCAGATGGGATCGTCACCAGAGGACCAGGGATCGTATGGAACAAGCAGTTGCTGATATGAACCAGCGTGACCTTCAAACTTTGCATGAGCAAGAGGAGAGGCGTAGGATAGCTGACAAAATGGATGTTCAGATAAAGCACTGGGCTGCAGGGAAGGAAGGCAATTTGCGTGCACTGCTATCATCATTGCAACATGTGAGTTTCACAACAGCCTTTTTAATTTGTAAATCTTTTTGCTTAACTTTTAGCACTTTACTAGGCAAGAAAGTATTGCATCTATTCTCTTATATTTGTTACTTTTTATATCTGAATTGCTTGTTAGTCTCTGACCAAACTGTGGTCTTGCATCTTAGAAGTGAGAATTTGGAACCAGTCTTCGAAGCGAGCTTCTGGATTGACGATCACAACTGCTGTTTCTGGCTCTGAATGAATGCCGTGAAACATTAATATGTTGATATGCTCCATTAAAATAGTCTTGTGCCTTGCTACAACTTTTTATTTGTTTTGCTTCTGAAAGTGTTGGGTTATCTGTATTTATGATGGTGAAGTTAAAATTATTGTTGTAGTTTTGATGTGATGATAGTGTCTCCACACTCCATGCATGCCTATTTTTGCGGTACCTTTAGAGGCACTGCTCTAATGGTGTAAAGTCCATGCTTTTTCACCACCAACCATACTATCAAGAAAACATTTTGAGGAACCATCTAGGTGATGGCCCAGTGATAAAAGCTTGGGACCAAGAGGTTTGCTTCCTCTGTGATCTCAGGTTCGAGCCCTATGGTTGCTCATATGATGGCCGCTGGAGGCTTACATGGTCGTTAACTTCAGGGCCCGTGGGATTAGTCGAGGTGCGCGCAAACTGGCCCGGACACCCACGTTAAACAAAAAAAAAAAAAAAA


gi|52498300|gb|CV245325.1|CV245325 WS0257.B21_B16 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0257_B16 3', mRNA sequence 

CTCTTGATCCCAAGTTCTTACCACT
|||||| |||| ||.||||| ||||
GAGAACCAGGGCTCGAGAATTGTGA

EST sequence (targeted fragment marked with yellow):
AATCAGTTTTGTGATGCTAGTGCTCCTATGTTTAACATTCGAGTGTCGCCTCTCCCCTTTTGCAGCTTCTTCGATTCTGCAAGAAAAAGTTCCATTGGCTGATGACATTGATTATGTTGCTGTCTATGATTGACTGGATGTAGAACTAGTAAGGCATATGCTCGATGGTTTTGGCTTGTTATTGTGGAGAAATTATTGTTTCTGATGCCTAATATACTCGGCGACATTTATCTATAATTTTAGCAGTTATATATGGCATCAGGGGACGAGGGGCTGATAGCTTTGTATTCTCACATACAGGATGAAGAGGGGAGCTAGATTTGGCGTGGAGATATGTCTGAGTTACTGAGTTCGCTGTTACTGAATTCATGTAGAGGGGACATTGTCTGCTGTGGCATGTGCTCCAGTAGTGGCTTCATATACTTGATGTACAGAACATGCTGCCACAGTTTGATTACTTTATAATCGTCTGTTTATAGCAATCTGAGACACCTGGTGTTCTCCGAACGCCTTTGCTGCTAACGTCAAAATGCAAGTGCTGATCTTAATTAAATTGTGACGTTTTTTTAGGCGGTTCGGTCTGCCTTTAAAGCAAAACTTAGGCGCGCAGTGTTAAGAGCTCGGGACCAAGAGGTTTGCTCCCTCTGTGATCTCAGATTCGAGCCATGTGGTTGCTCATATGATGGCCACTGGAGGCTTACATGGTCGTTAAGTTCAGGGCCCGTAGGATTAGTCGAGGTGCGCGCAAGTTGGTCCAAACACCCATGTTAAACTAAAAAAAAAAAAAAAACCTAGGCGCTTCCTTTTTGGTAAAGTCAAAACACAGTTTATTGTGTACATAGGACCCATATAAATTTTATTTAAATGAGTTGCTTTCCGCAAAAAAAAAAAAAAAAAA


gi|52496226|gb|CV243251.1|CV243251 WS02518.B21_F08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02518_F08 3', mRNA sequence 

CTCTTGATCCCAAGTTCTTACCACT
 ||||| ||||||.|||||| ||||
AAGAACCAGGGTTTAAGAATAGTGA

EST sequence (targeted fragment marked with yellow):
ACTGTTAAGTGGATTTATTTAATGTGACGTTAAAAATGCTATATAATCTCTTTATGATTTTCTTAATTGCTATGTTTTTTATTACTTTAGAAAAGAAAAAAAAAAGTATTTTTTAAATTATAAATAAAATTTATTATGAACGCACTTATCACACAATAAACATTATTTTTCTGTGTCATAAACTTGATAGCACTAATTATAATGACTTTAAGTAACTACGTTAAGTCCCAAAAATAATATTTTAATTCCTCTTCAATAAAAATGTCTAATATACAGGATGTTGTATTATATGATAATTATAATGGTTACCATTTCCTTTTTTTTGTTATTCCGTGTTTGGTCCCTTTTTCCGAGCCCAAAAACAAAAACAAAAACAGTAAGGTTTGCTTTTGGTTTTTGTTTTGCCGCTTAATTCCTCTGGCGGTTTGAAGAAGAAAAAAAGCGTCTTTTTCTAATAATATAGAGAGAGAAAGAAAATCATCTAGGTGGTGGTCCAGTGATAAGAATTTGGGACCAAGAAGTTTGCTCCTTTTGTGGTCTCAGGTTCGAGCCCTATGGTTGCTCATATGATGGCCACTGGAGGCTTACATGGTCGCTAACTTCAGGGCCCGTGGGATTAGTCGAGGTGCGCGCAAGCTGGCCCGGATACCCACGTTAAACTAAAAAAAAAAGAGAAAGAAAGAGAAAATTAAAGAATATGTAGATGCATTGATAAAACTAGCTGGATGGCTCTCGGGCGCTAGGTCAATTATTTTTACAGTGTAAGGAGCGTGACATCAATGTTTTCAAGTAAGTAAGGAAAATATAAGATAAGAAAAATCTAAGATTAAGATAATAAAAAAAACTGCCTATGCTGTTAGAAGAAAAACAAACTAAAAAATAATATAAAACAAGTATTTCATGCTGATATTTAATCAATTAATTTAATCTAATTTAAAAACAAAAAAAAAAAAAAAAAA