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mature miRNA: CTGAAGGGTTTGGAGGAACTC
species: Aquilegia formosa x Aquilegia pubescens
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|71699148|gb|DR929785.1|DR929785 EST1121324 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1NY81, 

CTGAAGGGTTTGGAGGAACTC
|||||||||||||||||||||
GACTTCCCAAACCTCCTTGAG

EST sequence (targeted fragment marked with yellow):
ATGAGTTTAGTATTTGTCTGCTTTCAGCGCGCGATGATACTGAAGTTATGAAGTGTTTGGTAACACCCAGAGTTCCTCCAAACCCTTCAGTAATAACAAATTTTGCAATTGATCGTTCCTGAAGCGGCAGGAGAAACTCCAGGGGATACCAAACCTGTAATGCATTATGCATATAACAATTTAATAGTATTCAAGAATGAGCTTGAACTGATAACCAGCCACTGTTTACTTATATACTGTACAGATCGACCTCTTACTTAATACTAGTGTTTGAGTTTTGTTGATGAACTTGGTCGTTCATGCAACCTTGTTCAAAGTGGATGAGTTAGATTCATTGAACTTAGTCATGTTTGCTGTTTGCTTTGCTGAAAAAGTGAGAATCTTTACTTTTATGTAGTTGCAAACTGTAAGTCTTTTTCATGTTACATCTCTCTGTTATCCTCTGTTCTCATTATGCACATTTCAGTATTTTGTCGAAAATTTGGTAACTATTCAGTCTTCTATCCTGATAATTTACATGGTTTATGCGATGATCAAGTGGTAGAGGAAAAAATATTGTGATGCTGCTGGCCTTTAGGAGCTGCCACTTGTCATGTGTAACGGTCGAAATTTAATTGTATGTGACCATATTCTACATTATCCGATAAGTCATACCGCCCCAAGCACAAATGCTTTAGAGGTAAAGATGGATATACGGAAAATTGTCATTTTTAGTATCCTATCCTGGATCTGATAAGTTAAATTTGGTTTTGAAGGGTGTATTATGTTACTATTACTATGAATTATATTACATTCTACGTAGACCAATTTTACTGATCATGAAGAACTAACGACTAAAACTGTTGCAAGCCATATAAGCAGATACTGTTAGAACTTATAAATGTTGAAATCAA


gi|75458200|gb|DT767111.1|DT767111 EST1200960 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1ZJ10, 

CTGAAGGGTTTGGAGGAACTC
 ||||||||||||||||||||
TACTTCCCAAACCTCCTTGAG

EST sequence (targeted fragment marked with yellow):
CTTCCTTACAATGGCGTCAATGGCGACACTTTTCGTCAATTCACCAAACCCATCTTACTCATTTTCGAAAAACTCAAAACCCCATTTTGGTTCTAATCTGAACTTTTCATTTTCTGTTCAAATTCAGAACAAAAAGATGAAAAATCATCAGAAAGTTAGGATCTTTAATGGTTTAATTGAACCTGATGGTGGGAAACTTGTTGAACTATTTGTTAAAGAGTCTCAAAAAGATGAGAAGAAGAAAGAAGCTTTATCAATTCCACGAATTAAGCTTTCTAAAATTGATCTTCAATGGGTTCATGTTCTAAGTGAGGGTTGGGCAAGCCCCCTTAATGGATTCATGAGAGAATCAGAGTTCCTCCAAACCCTTCATTTCAATTCGCTCCGACTTGATGATGGCTCTGTTGTCAACATGTCGGTTCCAATTGTATTAGCTATTGATGATTCACAGAAACAACGAATTGGTGAGTCAGACAAAGTAGCTCTTGTTGACGCAGATGATAATCCGGTCGCCATATTGAATAAGATTGAGATTTACAAACACAACAAAGAAGAACGAATAGCTAGAACTTGGGGTACCACTGCCCCTGGGCTACCTTACGTTGATGAAGCTATATCAAATGCAGGAAACTGGCTCATCGGTGGTGACTTGGAGGTTATAGAACCAATCAAGTACAGTGATGGTCTTGATCGGTTCCGTATGTCCCCTGCAGAACTTCGTGAGGAATTCACAAAGCGAAATGCAGATGCAGTGTTTGCATTCCAGCTCACGAATCC