| mature miRNA: CTGAAGTGTTTGGGGGAACTCC species: Solanum lycopersicum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|225402906|gb|FS198602.1|FS198602 FS198602 Solanum lycopersicum cv Micro-Tom root Solanum lycopersicum cDNA clone LEFL3132A23 CTGAAGTGTTTGGGGGAACTCC EST sequence (targeted fragment marked with yellow): TTGCTGATAGTGAGAAAGTACAACTTTCTGTGTTCTCCCAAACACTTCAAACACCCGTTGCTTCTGATAGAAGGCGCGATTGGGTACTTAATGTGCCCGAACCACCAGGACTGTTATCTAATCTGAAAACTTCATTCAAAAAAACACTACTCTGTCCTCTTGAAA | |||||||||
gi|225925651|gb|GO375661.1|GO375661 ctsd1j2 Tomato Seed Library [D] Solanum lycopersicum cDNA clone cTSD-1-J2 5', mRNA sequence CTGAAGTGTTTGGGGGAACTCC EST sequence (targeted fragment marked with yellow): CACGGGGGCGCACTCAGACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGCTGTATCTCTCTAATGGCGACAATGGCTTCTCTGTTTCTCAAAACTCCAGGTCCATCTCAATATTTACCCAAAACCCACAAAACCCATTTCGTTTTACCTCAACATATCCCACTTTCATGGCGTTCCAGGTATCGGGCCGGGCCGCTGGCGGCGGCCCGAATCCGATGCGGGCTGATCGAGCCGGATGGTGGAAAACTTGTGGAGCTGGTAGTTGAGGAGACACAAAGAGATTTGAAGAGGAGACAAGCTTTGTCTCTTCCACAGATCAAGTTATCGAAGATTGATATCCAATGGGTACATGTGCTCAGTGAAGGCTGGGCTAGTCCATTGAAAGGATTCATGAGAGAATCCGAGTTCCTCCAAACTCTTCATTTCAATTCGCTCCGATTAGGTGACGGCTCAGTCGTCAACATGTCGGTGCCGATTGTGCTCGCCATTGATGATTCGAATAAGAATAACATCGGTGATTCGAGCAGTGTTGCCCTTGTTGATGATAAGGACAATCCTATTGCCATTCTTAACGATGTTGAGATCTACAAGCATAATAAAGAAGAACGGACAGCCAGAACTTGGGGAACCACTGCCCCAGGTTTACCTTATGCAGAGCAAGCAATAACTCATGCTGGAAACTGGCTAATTGGTGGTGATTTGGAAGTTATAGAACCAATCAAGTATCATGATGGTCTTGACAGGTTCCGGCTTTCCCCTGCTGAACTTCGAGATGAATTTACAAGGCGCAATGCAGATGCAGTGTTTGCTTTTCAACTCAGAAATCCAGTGCATAATGGCCATGCATTATTGATGACTGACACACGTCGTCGACTTCTTGAGATGGGATACAAGAATCCTATCCTTTTGCTCCATCCTTCTGGAAGGTACACAAAACCAGATGATTGTTCCGCTTGAATGGCCAATGAAACAACATGAGATGGTACTTGAAGAAGGGGTTGGCTGATCCAGAAACCCCCGAAGTCCCTATATCCCATCTCCTATGCACTATGCTGGTCCAACAAAAGTCCATGGGCATGCAAAAGCTCCCAACCAGGCAAGGTGCTAACTTCACATTGGGGGCCCCGGATCCCACTGGTATGGGGCAATCCCTGGAGAAAAAGGGATCCGTTAGATGCAAATCATGGAAAAAAGGTCCTCATTGGGCCCCGGGGGCGGAAACCCCAAAAAACTTGCCTTTCAGGGCGGCGCCCTTGATAAAACTAAAAGGGAAGGGCCTTCTTGAAC | |||||||||
gi|225399975|gb|FS186645.1|FS186645 FS186645 Solanum lycopersicum cv Micro-Tom root Solanum lycopersicum cDNA clone LEFL3040H17 CTGAAGTGTTTGGGGGAACTCC EST sequence (targeted fragment marked with yellow): CTTCACAGTTTACACCAATTACTGATCCATCAAACACAAAAGAGTTCTCCGGAACACTTCAGTCTTTTGCTGATAGTGAGAAAGTACAACTTTCTGTGTTCTCCCAAACACTTCAAACACCCGTTGCTTCNNNNNNNNNNCGCGATTGGGTACTTAATGTGCCCGAACCACCAGGACTGTTATCTAATCTGAAAACTTCATTCAAAAAAACACTACTCTGTCCTCTTGAAA | |||||||||
gi|117717976|gb|DB726641.1|DB726641 DB726641 Solanum lycopersicum cv. Micro-Tom fruit Solanum lycopersicum cDNA clone LEFL2052P2 CTGAAGTGTTTGGGGGAACTCC EST sequence (targeted fragment marked with yellow): GTTAAAGGTTTTCAATTCACTTTGAAGCCTTAGCAAGCTATTAACTTCATCTTGCAACTTATATTTATTGTGTAAATAGAAACGAAACGAGACGAAGAAAAATGGCGGTAACAGGAGAAGGTGAGACAGAGTCTTCACAGTTTACACCAATTACTGATCCATCAAACACAAAAGAGTTCTCCGGAACACTTCAGTCTTTTGCTGATAGTGAGAAAGTACAACTTTCTGTGTTCTCCCAAACACTTCAAACACCCGTTGCTTCTGATAGAAGGCGCGATTGGGTACTTAATGTGCCCGAACCACCAGGACTGTTATCTAATCTGAAAACTTCATTCAAAAAAACACTACTCTGTCCTCTTGAAAACAAGATTCAATGCCTTGGAAAGCATCCTGTTTCTGCACTCGTTTCGATTCTGAACGTTATATTTCCACCACTTTCTTGGTGTAAAGAATATAATGTCACAAAATTCANAAGGGACATCTTGGCTGGTTTAACTCTTGCAAGCCTTTGCATCCCTCANAGCATTGGCTACGCGACTCTTGCAAAACTTGATCCTCAATATGGCCTGTACACAAGTGTTATTCCGCCGCTTATCTATGCTATGATGGGGAGTTCAAGAGATATAGCNATTGGNNCAGTTGCTGTTGTTTCATTACTCTTGNCCTCAANGGNTCCNAAACTTGAANATCCTACTACT | |||||||||
gi|225418088|gb|FS184787.1|FS184787 FS184787 Solanum lycopersicum cv Micro-Tom root Solanum lycopersicum cDNA clone LEFL3032O17 CTGAAGTGTTTGGGGGAACTCC EST sequence (targeted fragment marked with yellow): ATCACTCAAAACTCCAACAAAAATTCAATCTTTAACCAAAACCCATTACGCCATACCTCTCAATCTTCCTTTTTCATGCCGTTCCAAATCCAAAAGAACCGGGTCAATCGGGTCCCGGACCCGAATCCGTTGTGGTTTGTTGATAGAACCNGATGGAGGCAAACTTGTGGAGCTTTTTGTTGAGGAATCACAAAGAGAATTGAAGAGAGAAGATGCTTTGAAATTGCCTAAAATTAAGCTTACGAAGATTGATCTTGAATGGGTTCATGTGTTAAGTGAAGGATGGGCTAGTCCATTGAAAGGGTTTATGAGAGAAGATGAGTTCCTCCAAACTCTTCATTTTAACTCAATTCGTCTTGAAGATGGCTCTGTTGTTAACATGTCGGTTCCGATTGTGCTCGCCATTGATGATTCTCAGAAGAATCTAATTGGTGGCTCGACCAGTGTTGCCCTTGTTGATGACGAAAACAATCCCATTGCCATTCTAAGCGATATCGAGATCTACAA | |||||||||
gi|58213509|gb|BP876986.1|BP876986 BP876986 Lycopersicon esculentum maturing fruit Solanum lycopersicum cDNA clone FA06CG04 5', CTGAAGTGTTTGGGGGAACTCC EST sequence (targeted fragment marked with yellow): GAAGGCTGGGCTAGTCCATTGAAAGGCCTTATGAGAGAATCCGAGTTCCTCCAAACTCTTCATTTCAATTCGCTCCGATTAGGTGACGGCTCAGTCGTCAACATGTCGGTGCCGATTGTGCTCGCCATTGATGATTCGAATAAGAATAACATCGGTGATTCGAGCAGTGTTGCCCTTGTTGATGATAAGGACAATCCTATTGCCATTCTTAACGATGTTGAGATCTACAAGCATAATAAAGAAGAACGGACAGCCAGAACTTGGGGAACCACTGCCCCAGGTTTACCTTATGCAGAGCAAGCAATAACTCATGCTGGAAACTGGCTAATTGGTGGTGATTTGGAAGTTATAGAACCAATCAAGTATCATGATGGTCTTGACAGGTTCCGGCTTTCCCCTGCTGAACTTCGAGATGAATTTACAAGGCGCAATGCAGATGCAGTGTTTGCTTTTCAACTCAGAAATCCAGTGCATAATGGCCATGCATTATTGATGACTGACACA | |||||||||