mature miRNA: CTGACGGTGGACACGATGGTG species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|88675787|gb|CI729359.1|CI729359 CI729359 Oryza sativa (japonica cultivar-group) 9 leaf-stage leaf Oryza sativa Japonica Group CTGACGGTGGACACGATGGTG EST sequence (targeted fragment marked with yellow): GATGTCGCCGGACGGTCGCCGNACACGCCACAGTCGTCGTTGCACACACGCGCCGCCGTTGTTGTCGTCCTCTTCTCCTCCGACGTCGTCGTCGCCGTCGCCGTCGTGAACATGGCGGCGGAGGCGGAGCAGCAGCACCAGCTGCTGTCGACGGCCGTGCACGACACGATGCCGGGGAAGTACGTCCGCCCGGAGTCGCAGCGCCCGCGCCTCGACCTCGTCGTCTCCGACGCCCGCATCCCCGTCGTCGACCTCGCCTCCCCCGACCGCGCCGCCGTCGTCTCCGCCGTCGGCGACGCCTGCCCGCACCACGGCTTCTTCCAGGTGGTGAACCATGGCATCGATGCG | |||||||||
gi|88734939|gb|CI758447.1|CI758447 CI758447 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro CTGACGGTGGACACGATGGTG EST sequence (targeted fragment marked with yellow): TTGAAGGGAAAGTAAGAAAGAAAGAAAAGAAAAAAAAAAGGAAAATCGTGTCTCGTCTCGTCTCGTCTTCGTCTCCCCCGATTCCCGAGCAGCTTCTCGAAACCCTCGCGGCCTCGATTCCGGCGATGGCGGAGCCCAACCCGCAAGTGGAGAGGGAGGTGGAGGTGGAGGAGGTGAGGAGGCCGAAGCTGAGGTACTTGGAGTTCGTGCAGGTGGCGGCAGCGCAGGCGAAGATCTGCCTCGCGGGGCTCTACGCGCCTGCCAAGGACCACGCCGGCCCGCTCCGCCCCGGCGTCGACGCCGTCGAGTCCGCCGTCAAGGGCGTCGTCGGC | |||||||||
gi|88837848|gb|CI371426.1|CI371426 CI371426 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone CTGACGGTGGACACGATGGTG EST sequence (targeted fragment marked with yellow): GTCGCTGCCAAACCACCGAGCAAACATTATTATCATTATTCTCATTTATAATCAAACAGGTCGAGTTTGAAGCCTGTGTTGTTCTTGTCATCGATCTACAATGCAGCCCTCTGCTGGCTGAAAGCCACCGGAATTTATGTGACCAGGTTGATGCCCTCGGCGAGGAGGGAGTCGGCGAGCACCTGGTTCGCCGCCTCCGACGGGTGGACGGGGTCCCAGAACACGTACGTCGTCGCGTTCGGGCAGGTGCCGATCGACTTGGGGTTGCACAGAAGCACCGTCGTCTCCACCGTCCCTGTCCGCAGAATCCCCTCCTCGCCTCCGTGAATCCTTGGGATTGAGGAGAGGTGACGAGGTCGTAGAGGGGCGTGTAGATGTCGAACACGGCGATCTTGAGGTCGGAGTAGGTCTTCGAAAGCGAGTCGACGGTGACGTTCATCTTGCCGTTGAAGTTCTGGCGTCGCTGTT | |||||||||
gi|117229895|gb|CT846333.1|CT846333 CT846333 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD CTGACGGTGGACACGATGGTG EST sequence (targeted fragment marked with yellow): AATAAATTTAATTACACGAATCTTATGTCACAAGCATTCCTCGACGCAGCTGAGGAGGTCAAGAAGCTCAAAACCAAGCCATCCAATGATCACCTTCTCCTTCTCTATGGTCTCTACAAGCAAGTCACAGTTGGAGATAACAACACTGCCGAACCCGGAATGTTCTCCTTTGAGGGTAAAGCTAAATGGAAAGCATGGAATGAGCACAAGGGAAAACCAAAGGATCAAGCAGAAAAAGAGGATATTGCCGAAGTTGAAGCCCTCAAAAAGACCAATAGCTGATCTATATGAATAAAGATCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTACAAACAAAAAAAGACGACGTGAGCATTGCAGAGTTCAGTGTAACAAAGACACTGAAGCTACAGCCTACAGAGAGAGAGTATCTGGATACTTAATTGTGTGCTTAGCTTGCGGTTAAGCAATGGCTTATTCCAGGCAAATCTTCGTCTGCTCTGCCATGGCTGCGTTGCTCTTCTCTGCTGTTGTTTCGGCGCAGCTCTCCACTGATTTCTACGACGAGACATGCCCCGACGCGCTCGACATCATCGAATCTGCCGTCAGAGCCGCCGTTTCCAAGGAGTCCCGCATGGGAGCTTCTTTGCTGCGCCTCCATTTCCACGACTGCTTTGTCAATGGGTGTGACGGGTCAGTGCTGCTCGACGACACGGCGGCCATCACCGGCGAGAAGAACGCGAAGCCGAACAAGAACTCCCTCCGCGGCTTCGAGGTCGTCGACGACATCAAGTCGCAGCTCGAGGATGCCTGCGAGCAGGTCGTCTCCTGCGCCGACATCCTCGCCGTCGCCGCCCGCGACTCCGTCGTCGCTCTGGGCGGGCCGACGTGGGACGTCGAGCTGGGCCGGCGAGACGGGACGACGGCGAGCCTGGACGCGGCGAACAACGACCTCCCGCCGCCGACGTCCGACCTCGCCGACCTGATCAAGTCCTTCTCCGACAAGGGCCTGACGGCGAGCGACATGATCGCGCTGTCGGGCGCGCACACCATCGGGCAAGCCAGGTGCACCAACTTTCGCGGCCGCCTCTACAACGAGACCAACCTCGACGCCACCCTCGCCACCTCGCTGAAGCCGAGTTGCCCCAACCCCACCGGCGGCGACGACAACACGGCGCCGCTCGACCCGGCCACCTCCTACGTGTTCGACAACTTCTACTACAGGAACCTCCT | |||||||||
gi|86506734|gb|CI149367.1|CI149367 CI149367 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft CTGACGGTGGACACGATGGTG EST sequence (targeted fragment marked with yellow): TAAAAAGAAGTGTTGAAATCATCTGAGTATATTAATACGACGAGACAATAAAACTTTCAAACAAAAAAAAATGATAAGTACAGAAACCTTCAAGACCTACTCCCAGTTTATCGAGCTGTGTATAAAATTTAAAACTGTAAAACATCGTCCTATATTGCTGGGCTGATGGCATGCAACACAGCGACAGCCCGAAACACCCTCAACTCCACATCGACACATTTTAGAGCTGTCGCTGCCAAACCACCGAGCAAACATTATTATCATTATTCTCATTTATAATCAAACAGGTCGAGTTTGAAGCCTGTGTTGTTCTTGTCATCGATCTACAATGCAGCCCTCTGCTGGCTGAAAGCCACCGGAATTTATGTGACCAGGTTGATGCCCTCGGCGAGGAGGGAGTCGGCGAGCACCTGGTTCGCCTCCGACGGGTGGACGGCGTCCCAGAACACGTACGTCGTCGCGTTCGGGCAGGTGCCGATCGACTTGGGGTTGCACAGAAGCACCGTCGTCTCCACCGTCCCTGTCCCGCAGCATC | |||||||||
gi|88741206|gb|CI764714.1|CI764714 CI764714 Oryza sativa (japonica cultivar-group) 2 weeks seedlings root of seedling UVC irradi CTGACGGTGGACACGATGGTG EST sequence (targeted fragment marked with yellow): GTCAACTCCGTCGACGGTTTCCAAGGCAGCGAGGAGGACATCATCATCCTGTCCACCGTCAGGTCCAACAGTACAGGATCCATCGGTTTCCTCTCCAACCGTCGCCGCGCCAACGTCGCCCTGACAAGGGCAAGGCATTGCCTCTGGATCCTGGGCGACGCGGCGACGTTGCTCGGCAGCGGCTCCGTCTGGGGGGAGCTGGTCCGGGACGCCGTGGATCGCCGGTGCTTCTACGACTGGGACGACGGCGGCGCTGGTTTGCTCGGCGTTGCTCGGCGCGGACACGAGGACGAGCTGGACGATGCGGTCGAGTTCGCTACGGCGTTTGACACGTTCGCAGACGAAGCGGGGTGCAGAGACGATATCTGCGACGCGCTAGGCT | |||||||||
gi|88973951|gb|CI718359.1|CI718359 CI718359 Oryza sativa (japonica cultivar-group) 9 leaf-stage leaf Oryza sativa Japonica Group CTGACGGTGGACACGATGGTG EST sequence (targeted fragment marked with yellow): GATGTCGCCGGACGGTCGCCGCACACGCCACAGTCGTCGTTGCACACACGCGCCGCCGTTGTTGTCGTCCTCTTCTCCTCCGACGTCGTCGTCGCCGTCGCCGTCGTGAACATGGCGGCGGAGGCGGAGCAGCAGCACCAGCTGCTGTCGACGGCCGTGCACGACACGATGCCGGGGAAGTACGTCCGCCCGGAGTCGCAGCGCCCGCGCCTCGACCTCGTCGTCTCCGACGCCCGCATCCCCGTCGTCGACCTCGCCTCCCCCGACCGCGCCGCCGTCGTCTCCGCCGTCGGCGACGCCTGCCGCACCCACGGCTTCTTCCAGGTGGTGAACCATGGCATCG | |||||||||
gi|66929151|gb|CX115999.1|CX115999 EI101O01 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl CTGACGGTGGACACGATGGTG EST sequence (targeted fragment marked with yellow): GGCGCCAGTTGGATCTCTAGGACTGTGCGGCATCCGGTNTGACCACGCGTCTNCAGATGACATGACGTTGTTGATGAGCGAAGACGTGTCGGCGCGTGGAGGGCATACCCGTCGCTGTGCTGACGACTGCGATCGGCAACTTCGCCGGTCCGTGTCATCGAGCCCAGGTGCTGGAGCGCATAGTGCGAGAGACATCGATGGGTCCCACACGGAGGCTTCGTGGTTCCCTCTCCAGTCATCGACCAGTTCTGTCGAGCTTCGCTCGTGAGCTACGTGAACGTCGAGATGGGCATCACCATGGCGATCGTGTTCACCGGCCAGCGTGTCTACCGTCAGATTAGCGTCACCGACCGTCCTGCATCGTTGACGAGATGATACACTGTGGTTGCTGGGCCAACTTCGTAGTCCAGAGGCGACGTTCCTAGGTATGATACCGCACGGAGCGAGAATAAAGACGGACACCCATAAAGTGGTTTTATGCTGCGAGGCACATAAGCACCCCATCGAGAGGCCATTGATCAATAACCCGAAAAAATATCTACATCAGCTATGCATACTCTATGATAGATCGCAATCACACTTCAGCTATGACTACAAGACCTGGCGCTGCGCGGTTGCTGGGCACGATACTTATACACTTCGTTCAAAGTAGACTAAATGTCAATCGCATAAGAATAAAACTAATTCCCCTTACTTCTCACCTATCCATCATAACACTCCATATTACATCCCCAAAAACAATACACACAACACTAATACTTCTATTCTTATCAAAATCTAACACAAAATCAAAAATGACCACACAAATCCTGTCCACATGCACCACACTACACCATCAGACTATACAAACCCTCCCACCTCTTTCCTAACATACTACTACCATCTACCACCCACTCTCATATCTCCATTAAAAGAAATACAAATAATATGACAAACTAACACCGCACCTCCAATGACAATATACACACCACATCCCACACATCTACAGAAGCTAGAAGTTATACTAGAATAAACTCATTACATCACGAAACGCAAAAACCTCAAATATCATACCTATGTACATCTACTATCACACAATAACCCTCCGAAGCAA | |||||||||
gi|89169461|gb|CI109820.1|CI109820 CI109820 Oryza sativa (japonica cultivar-group) Panicles less than 5cm stage Oryza sativa Jap CTGACGGTGGACACGATGGTG EST sequence (targeted fragment marked with yellow): CCACAGTGTGACAAAATCTTGCACACCACACTTGATCATCACTTTTTTTTTCAACGAAAACTTGTTCGTCGCACTTCTCCTGTTAACCACCATATAAATCTCCCCAAAAGTGAAGTCTTTCACCACTTATGCATGCCAAGAGGTTTAACAAGATGGCTCGGCCGTCGTCGTCGTGGTGGATGGCGCTGCTCGTCGTCGCCGCCGTGGCGCAGCTCGGCGCGTCCGACCTGAGGACGGACTACTACAACAGCACGTGCCCCAACGTCGAGAGCATCGTGCTCGGCGTGGTGAAGGACAAGATGCAGGCCACCATCCGCACCATCGGCTCCACCGTCCGCCTCTTCTTCCACGACTGCTTCGTCGATGTACAAACACTTTGCTTGATTGATTAATCGGCGATGTGTCAAGCATGGCGATCTCGATTGACTGACGTCGTGTGTGCGGCGTGGCGTGGCGTGGCGTGCAGGGGTGTGACGGCTCGGTGCTGATCACGTCGACGGCGGGCAACACGGCGGAG | |||||||||
gi|88412117|gb|CI566846.1|CI566846 CI566846 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone CTGACGGTGGACACGATGGTG EST sequence (targeted fragment marked with yellow): GACGTATCGCTCTCCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCGCCGCGCGGCGGAGGCGTTCGTCGCGAGCTGTCGGCTTCCCTCCTCGCGCCCGCGGCGGCTGTGGCCATGGAGGTCCCCATCTCCGGCGGCGGCGGAGGGGAGAGGTTCTGCCACGCGGAGCAGGTGGTGGGGGCGGACGGGGAGATGGACGGGGAGGCGATGGCGCGGTTCGCGGCGGGGGCGGGGCTCCTGGGCCGTGGCCTCTCCTACGCCGTCGTCTCCATCGTCGGGCCCCAGGGCAGCGGGAAAAGCACC | |||||||||
gi|87022996|gb|CI280013.1|CI280013 CI280013 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo CTGACGGTGGACACGATGGTG EST sequence (targeted fragment marked with yellow): GAAAAAGTCAAATAGCCTGCAAATTTCAACCATTACAAGGGTGCCAACAGATCCGCAGATCCGCATCGGTCGCTGAACATCGAACCCTGCCATGCCACCAAACAACATATAGCTTTTGTTCTCGATCAACAAACCAAGCATGACATGCCAATATTTACAAACATCAAACTAGCAAGCTCTGCATTAGTTGAGCTTTATTACCAGTACTAAGTATATTACTTAGCAACTATTATTTTGGCCTCTTGACAATCAGCACTGGGCATTTGCAGTTCTGCGCACAGTGATTGCTCACGCTTCCCAGGAACGCCCTCTGGATGAGGCCGTATCCATGGGTGCCCATGACCAGCAGATCGGCGGCCATCTTCTCGGTGGCGTCGCAGATGACGTCGCGCGGGTCCCCGCTCCCCACCATCGTCTCCACCGTCACGTGAGGGAAAGCGGCGCAGATGTGCTTGGCCTTGCCCACCGCCGCGGCGGAGACGGCGGCGGCGTACTTGTCCATGCTCGCCATCACGTCCGAGGTCATCATGTACCCTGAGCTGTCCATGGC | |||||||||
gi|88215643|gb|CI215492.1|CI215492 CI215492 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft CTGACGGTGGACACGATGGTG |