| mature miRNA: CTGAGCTCTGTTGGTCTCTCT species: Manihot esculenta database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|67208210|gb|DR083731.1|DR083731 CAST012D11 cassava tuber Manihot esculenta cDNA clone CAST012D11, mRNA sequence CTGAGCTCTGTTGGTCTCTCT EST sequence (targeted fragment marked with yellow): TTTTTGTCTGCTCACTGTAACATGGACCAACAGAGCTCATTTCATTGCTTTGGACTATTTTTGGGGATGCAGAGAAGGGATCAGTAAGCTTTGCTGTTGACTATGAATTTGCTGCAAGATCAAAGCCAACTGAAGAGTATGTGAGCAAGTACAAGGGGAACTACACTTTCACAGGTGGCAAGGCTGTTGGATATAGGAATCTGTTTGGCATACCCCTGGAACGCATTCATGGCAGATGACAGCCTCTATTTCATCAATGGTATCCTCCATCTCAGGGCAGAGCTTACCATAAGAACAATAAATTTTTGTCTTCATGATGAACCTTTTGGCCTCTTAGGTTTTTGTTATATATATGGAACTGCCCGTAGGTACAATTTGGGTTCCTGCACTCG | |||||||||
gi|67211783|gb|DR085788.1|DR085788 CAST058G08 cassava tuber Manihot esculenta cDNA clone CAST058G08, mRNA sequence CTGAGCTCTGTTGGTCTCTCT EST sequence (targeted fragment marked with yellow): CTCACTGTAACATGGACCAACAGAGCTCATTTCATTGCTTTGGACTATTTTTGGGGATGCAAGAGAAGGGATCAGTAAGCTTTGCTGTTGACTATGAATTTGCTGCAAGATCAAAGCCAACTGAAGAGTATGTGAGCAAGTACAAGGGGAACTACACTTTCACAGGAGGCAAGGCTGTTGGATATAGGAACCTGTTTGGCATACCCTGGACAGCATTCATGGCAGATGACAGCCTCTATTTCATCAATGGTATCCTCCATCTCAGGGCAGAGCTTACCATAAGACAATAAATTTTTGTCTTCATGATGAACCTTTTGGCCTCTTAGGTTTTTGTTATATATATGGAACTGCCCGTAGGTACAATTTGG | |||||||||
gi|119019104|gb|DV456655.1|DV456655 CV02022A1H12.f1 CV02-normalized library Manihot esculenta cDNA clone CV02022A1H12.f1, mRNA s CTGAGCTCTGTTGGTCTCTCT EST sequence (targeted fragment marked with yellow): GCAGNNNGTTGTGTACCTAGATTTGAAGCGTGAGGAGTGTGCACATCTATTTCCAGCAGGCCGGGTGTATTCTCAAGCATTTCACTTGGGTGGACAGGGGTTTTTTTTGTCTGCTCACTGTAACATGGACCAACAGAGCTCATTTCATTGCTTTGGACTATTTTTGGGGATGCAAGAGAAGGGATCAGTAAGCTTTGCTGTTGACTATGAATTTGCTGCAAGATCAAAGCCAACTGAAGAGTATGTGAGCAAGTACAAGGGGAACTACACTTTCACAGGAGGCAAGGCTGTTGGATATAGGAACCTGTTTGGCATACCCTGGACAGCATTCATGGCAGATGACAGCCTCTATTTCATCAATGGTATCCTCCATCTCAGGGCAGAGCTTACCATAAGACAATAAATTTTTGTCTTCATGATGAACCTTTTGGCCTCTTAGGTTTTTGTTATATATATGGAACTGCCCGTAGGTACAATTTGGGTTCCTGCACTCGTTATTTATTATATTGATTCCAGCAGCCAAAATACCAGAAGGAAAAAAAAAAAAAAAAAATGC | |||||||||
gi|67213356|gb|DR086570.1|DR086570 CAST075G09 cassava tuber Manihot esculenta cDNA clone CAST075G09, mRNA sequence CTGAGCTCTGTTGGTCTCTCT EST sequence (targeted fragment marked with yellow): TTGTCTGCTCACTGTAACATGGACCAACAGAGCTCATTTCATTGCTTTGGACTATTTTTGGGGATGCAAGAGAAGGGATCAGTAAGCTTTGCTGTTGACTATGAATTTGCTGCAAGATCAAAGCCAACTGAAGAGTATGTGAGCAAGTACAAGGGGAACTACACTTTCACAGGAGGCAAGGCTGTTGGATATAGGAACCTGTTTGGCATACCCTGGAACAGCATTCATGGCAGATGACAGCCTCTATTTCATCAATGGTATCCTCCATCTCAGGGCAGAGCTTACCATAAGACAATAAATTTTTGTCTTCATGATGAACCTTTTGGCCTCTTAGGTTTTTGTTATATATATGGAACTGCCCGTAGGTACAATTTGGGTTCCTGCACTCGTTATT | |||||||||
gi|56921436|gb|CK645773.1|CK645773 si.09.D09.5 MCol1522 cassava lambda zap Manihot esculenta cDNA 5', mRNA sequence CTGAGCTCTGTTGGTCTCTCT EST sequence (targeted fragment marked with yellow): AGGAGAGATTAACAGAGCTCTGAAGAAGGAGAAATTTTACATACAAGTGGACTGCTTGCTCTTCCTAACTATGGATAAGGTTGAAGATTCAATTAAGAATCAAATAGCTGCACTTTGGCGAGTTATAAATGTGACAAGAAGCTTTAAGGAGGACAACCTTCCTTGCCAAATTGAAGAGGGCCTCTTCTTGGGTTCTTTTGGTGCTGCTAATAATAAGGATGCACTAAAAAGCAAGAATATTACCCACATCTTAACAGTAGCTAATTCTTTGGCTCCTGCTCATCGAGATGATTTTATATATAAAGTCATTGGAGTTGCGGATAAAGAAGACACAAATTTGAGACAATACTTTGATGAGTGTTTCAGTTTTATTGATCAAGCTAAAAGACAGGGTGGTGGTGTTTTGGTTCATTGCTTTGTTGGAA | |||||||||