| mature miRNA: CTGCACTGCATCTTCCCTGTGC species: Physcomitrella patens database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|208389355|gb|DC953193.1|DC953193 DC953193 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. paten CTGCACTGCATCTTCCCTGTGC EST sequence (targeted fragment marked with yellow): GTGCAGATACAGCTGTAGTNGAGTGCGGTGGTGCTGAGAAGTAGTCGCCATNGCTCAGGGAAGATGCAGTGCAATGCTGGCTGTAGCGCTTCTCGTGGTTAGTGCCGCGGTGGTTGCTCAGGCTGTCACTTACGACGTGCCGCGGTGGACCGTCCCTGCGGCTGCAAACGCAGATGTTTATACTACTTGGGCTGCGAATGTTTCCAATTTCCTTAAGCCAGGAGATGTATTGGTCTTCCAGTATTCGGCAGCAGCGCACAACGTGCTGACCCTTGCAACAAAAGCGAACTACGACAATTGCGTTAAGACATCCCCTCTCAACACGACCAGCACCGGGAACGATGCACTCGTAGTCAAAGCGGGAGGTAATTATTTTATCTGCGGTATTCCCACGCATTGCGAATCAGGTCAGAAGGTGGCTGTCAACGTGTCCGCAGCCACCGGAACTCCTGAAACCCCCGGAACTCCTGCAGCTCCCGGAACTCCTGCACCACAGGGACCTTCTTCTGCCACTTCCTTGACTGTTCGTCAGACCTTTGCTGCTGTATCAGTTGCCCTATCCGCTTCTCTCATCATCTGGTAGGCATCAATTAGTTTCTCTGGACGGATAGAACCAGCCTTGGAGGGTCTTATTCCGTTTCAGGGGTGTAATCTCGCTTAGAGGATGTGTGACTGGTGTGCGGACACGAATGTCCTCGCGACCAGGTTAGAGTTTCGATGTGAATTGTGGTGACCTGGCTGAGGTTCAAGTCTTTTGGCGAGGGAGATGGTTGACACTTCTCCTGTATGTCTGTCTACCCTCAGAACATATGAATAGTGAAA | |||||||||
gi|208397358|gb|DC908248.1|DC908248 DC908248 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp CTGCACTGCATCTTCCCTGTGC EST sequence (targeted fragment marked with yellow): GCATTACTTCCCCTGTCAGGTCTCTGACGATTCACGAGTCGCTAGTCTCGGTTGTGTGAGGATAGTTTCTTAAGTAGTACCAGTTGAAGCCTTTGGTTTTGATTTAGTGGCAGTCGGTGGTTGTCCATTTGTTGTGGGTTAGCTCTGTGCAGATACAGCTGTAGTGGAGTGCGGTGGTGCTGAGAGGTAGTCGCCATGGCTCAGGGAAGATGCAGTGTAATGCTGGCTGTAGCGCTTCTCGTGGTTAGTGCCGCGGTGGTTGCTCAGGCTGTCACTTACGACGTGCCGCGGTGGACCGTCCCTGCGGCTGCAAACGCAGATGTTTATACTACTTGGGCTGCGAATGTTTCCAATTTCCTTAAGCCAGGAGATGTATTGGTCTTCCAGTATTCGGCAGCAGCGCACAACGTGCTGACCCTTGCAACAAAAGCGAACTACGACAATTGCGTTAAGACATCCCCTCTCAACACGACCAGCACCGGGAACGATGCACTCGTAGTCAAAGCGGGAGGTAATTATTTTATCTGCGGTATTCCCACGCATTGCGAATCAGGTCAGAAGGTGGCTGTCAACGTGTCCGCAGCCACCGGAACTCCTGAAACCCCCGGAACTCCTGCAGCTCCCGGAACTCCTGCACCACAGGGACCTTCTTCTGCCACTTCCTTGACTGTTCGTCAGACCTTTGCTGCTGTATCAGTTGCCCTATCCGCTTCTCTCATCATCTGGTA | |||||||||
gi|208393810|gb|DC928674.1|DC928674 DC928674 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp CTGCACTGCATCTTCCCTGTGC EST sequence (targeted fragment marked with yellow): GGGNTAGCTCTGTGCAGATACAGCTGTAGTGGAGTGCNGTGGTGCTGAGAGGTAGTCGCCATGGNTCAGGGAAGATGCAGTGCAATGCTGGCTGTAGCGCTCTCGTGGTTAGTGCCGCGGTGGTGCTCAGGCTGTCACNTACGACGTGCCGCGGTGGACCGTCCCTGCGGCTGCAAACGCAGATGTTTATACTACTTGGGCTGCGAATGTTTCCAATTTCCTTAAGCCAGGAGATGTATTGGTCTTCCAGTATTCGGCAGCAGCGCACAACGTGCTGACCCTTGCAACAAAAGCGAACTACGACAATTGCGTTAAGACATCCCCTCTCAACACGACCAGCACCGGGAACGATGCACTCGTAGTCAAAGCGGGAGGTAATTATTTTATCTGCGGTATTCCCACGCATTGCGAATCAGGTCAGAAGGTGGCTGTCAACGTGTCCGCAGCCACCGGAACTCCTGAAACCCCCGGAACTCCTGCAGCTCCCGGAACTCCTGCACCACAGGGACCTTCTTCTGCCACTTCCTTGACTGTTCGTCAGACCTTTGCTGCTGTATCAGTTGCCCTATCCGCTTCTCTCATCATCTGGTAGGCATCAATTAGTTTCTCTGGACGGATAGAACCAGCCTTGGAGGGTCTTATTCCGTTTCAGGGGTGTAATCTCGCTTAGAGGATGTGTGACTGGTGTGCGGACACGAATGTCCTCGCGACCAGGTTAGAGTTTCGATGTGAATTGTGGTGACCTGGCTGAGGTTCAAGTCTTTTGGCGAGGGAGATGGTTGACACTTCTCCTGTATGTCTGTCTACCCTCAGAACATATGAATAGTG | |||||||||
gi|208392388|gb|DC907893.1|DC907893 DC907893 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp CTGCACTGCATCTTCCCTGTGC EST sequence (targeted fragment marked with yellow): ACTGCATTACTTCCCCTGTCAGGTCTCTGACGATTCACGAGTCGCTAGTCTCGGTTGTGTGAGGATAGTTTCTTAAGTAGTACCAGTTGAAGCCTTTGGTTTTGATTTAGTGGCAGTCGGTGGTTGTCCATTTGTTGTGGGTTAGCTCTGTGCAGATACAGCTGTAGTGGAGTGCGGTGGTGCTGAGAGGTAGTCGCCATGGCTCAGGGAAGATGCAGTGCAATGCTGGCTGTAGCGCTTCTCGTGGTTAGTGCCGCGGTGGTTGCTCAGGCTGTCACTTACGACGTGCCGCGGTGGACCGTCCCTGCGGCTGCAAACGCAGATGTTTATACTACTTGGGCTGCGAATGTTTCCAATTTCCTTAAGCCAGGAGATGTATTGGTCTTCCAGTATTCGGCAGCAGCGCACAACGTGCTGACCCTTGCAACAAAAGCGAACTACGACAATTGCGTTAAGACATCCCCTCTCAACACGACCAGCACCGGGAACGATGCACTCGTAGTCAAAGCGGGAGGTAATTATTTTATCTGCGGTATTCCCACGCATTGCGAATCANGTCAGAAGGTGGCTGTCAACGTGTCCGCAGCCACCGGAACTCCTGAAACCCCCGGAACTCCTGCAGCTCCCGGAACTCCTGCACCACAGGGACCTTCTTCTGCCACTTCCTTGACTGTTCGTCAAACCTTTGCTGCTGTATCAGTTGCCCTATCCGCTTCTCTCATCATCTGGTANGCATCAATTAGTTTCTCTGGACGGATA | |||||||||