| mature miRNA: CTGCACTGCCTCTTCCCTGGC species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|30942658|gb|CD209002.1|CD209002 HS1_45_G09.g1_A012 Heat-shocked seedlings Sorghum bicolor cDNA clone HS1_45_G09_A012 5', mRNA CTGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): CTACTGGTCGGCATTCCCCCGCCGGCCGCCGCCAACCCCAACCCACCGCCGCGCGCGCTGTCTCCCTCTCTCGTGGAGACGACTGTGCGACAGCCGCTGCCGACAAACGCCAGGTGCCCAGGTCTTCTTCAGGCCCTTCGCCGGCGACGAGCACCGCCAGGTTTGGGTCGAGCGGGGGCCGATGGGGGAAGAGGCGGAGAGCACCTGCAAGCGCAAGGCGCCGGACTCGAGCGCGGAGGAGCAGCCGAGTTCCGCGCCTGCGCAGTCGCAGTCGCAGGCGGACCCGGCGGCCAAGCGCCGGAACCTCTCCCGCTCGTGCGTCCACGAGGTCGCCGTCCCGAAAGGGTACGAGTCGGCCAAGGACGAGGCGGTGCACGGGACGCTCGCCAACCCGGACTTCAATGGGGAGATGGCCAAGCAGTACCCGTTCAATCTCGACCCCTTCCAGAGCACCTCCATCGCGTGCCTGGAGCGGAACGAGTCCGTGCTTGTTTCTGCGCACACTTCTGCGGGGAAGACCGTTGTTGCTGAATACGCCATTGCAATGGCGTTCAGGGACAAGCAGAGGGTCATCTACACCTCCCCGCTCAAGGCCCTGAGCAACCAGAAGTACAGGGAGCTC | |||||||||
gi|9847291|gb|BE592218.1|BE592218 WS1_89_H09.g1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA sequence CTGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): AGGTGAGCGCGGCGGACTACCCCGCCTGCTCCTCCAGCAAGGCGCTCAGCAGCGACAGCGCCGGCAGCACGACCGTGACGCTCAAGACCGCCGGCAAGCACTACTTCATCTGCGGCGTCGCGGGCCACTGCAGCAGCGGCATGAAGCTCGTCGTGGACGTGGCCAAGGCGGTGTCCGCCGCCCCGGCGCCGGCGCCGGCCGAGGCCCCGGCGCCGGCCGCGTCCGCGGACACCACCCCAGACGCCCCCGACGCCACGCCGTCGACCCCCTCGAGCTCCGGCGTCACGCCCAAGACCAAGAGCCCAGTCACGGACCTCTCGCCGCCGGGCAAGAAGTCCACCTCCACCTCCGGCGCCACCGGGCTCAGCGCCGCGGCGTGGGCCGGATTGGGCCTTGCTGGGCTCGTGGCCCTGCATCTCGGCGCGTTCTAGGGCCCGCTGGGCTGACCAGGGTGGAGGCAGTGCTGTTTGTTCTTAGGCACGTCATGGATTCGTGTATTGGTTGAGGGACTTGGCTAGTTATTACTTACCAGAGATTTCTTTTGATTCAGGGAACTTTTATTGGTGCTTTTGCTGTGCTGGTGGCTGTATGTAG | |||||||||
gi|33107769|gb|CF071110.1|CF071110 FE1_15_G11.g1_A002 Iron-deficient seedlings Sorghum bicolor cDNA clone FE1_15_G11_A002 5', mR CTGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): TACTGGATCGCCAACTCGGAAACCTTCAGAGGAAAGCCACTGCTAGCAAATCCCCCCGCGGTTCCATCGAGAGCCAACGCCGCCGCGGCAACATTTCGTTCTCGCCATGGCGTCGCTGTCGTCGACCTGGCTGCTCCTTCTCCTCTCCTGCCTCGCGCTTGCGCTGCTCGCGGCGGACGCCGAAGTGCACCACCATGAGTTCGTTGTCCAAGAGACGCCGGTGAAGAGGCTGTGCAAGACACACAACATCATCACGGTGAACGGACAGTTTCCGGGGCCGATGCTGGAGGTCAGGGAGGGCGACACGCTCGTGATCAACGTCGTCAACCGGGCGCAGTACAATGTCACCATCCACTGGCACGGCATCCGGCAGATGAGGACTGGGTGGGCGGACGGGCCTGAGTTCGTGACGCAGTGCCCCATCAAGCCCGGCGGCAGCTACAAGTACCGGTTCACCATCGAGGGGCAGGAGGGCACGCTGTGGTGGCACGCGCACAGCTCCTGGCTCAGGGCCACCGTCTACGGCGGGCTCATCATCCGCCCCAGGGAGAACAAGACCTACCCTTTCGCCAAGCCCTCCCGCGAAGTCCCCCTCATCCTCGGGGAAGTGGTGGGATGCGAACCCGATCGATGTCATCCGGGAGGCTCAGAAGACGGGCGGCGGTCCCAACGTCTCCGACGCCTTCACCATCAACGGCCAGCCCGG | |||||||||
gi|45990622|gb|CN149122.1|CN149122 WOUND1_60_G12.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_60_G12_A002 5', mRNA s CTGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): TCCCGCACCCGCAGTTGTACTGCGGGCGGAAGCAGCCGCACACGCATAGGCGGCGGCAGCAGTGGACGCCGACCAACCCTACCCTATCTTCCGGGTGCCGGCGCGGCGAGGTTCGTAGGCGGTTGGATTCGATGGCGGTGGTGTCGCGGCTGGCAGTCTCTCGGGTGTCGTCGGACGGCGCGGCGCGCCCCGCGGCGGCAGGGGGGAGGAGGACGAGGACTGCGCTCGCGGGGGTTCGGTTCCCGCCGGCCGCCAGGACGGGGAGGACGAGGCGCGGCGGGGCCGTCGCGGCTAGCCCCCCCACGGAGGAGGCGGTGCAGATGACGGAGCCGCTCACCAAGGACGACCTCGTCGCCTACCTCGTCTCCGGGTGCAAGCCCAAGGAGAATTGGAGAATTGGCACGGAGCATGAAAAGTTTGGTTTCGAAGTCGACATGTTACGCCCTATAAAATACGATCAGATTCGTGACATACTGAATGGGCTCGCTGAGCGATTTGATTGGGACAAGATAATGGAAGGAGACAATGTTATCGGCCTCAAGCAGGGAAAGCAAAGCATCTCACTAGAACCTGGAGGCCAATTTGAACTTAGTGGCGCTCCTCTCGAAACATTACATCAAACTTGTGCTGAGGTCAATTCACATCTTTATCAGGTCAAAGCAGTTGGAGAGGCAATGGGAATAGGATTTCTTGGGCTTGGCTTTCAGCCGAAATGGGCACTGAGTGATATACCAATAATGCCAAAGGGAAGATACGAAATAATGAAGAATTACATGCCTAAAGTTGGTACCCTTGGTCTTGACATG | |||||||||
gi|9299525|gb|BE357968.1|BE357968 DG1_23_H09.g1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence CTGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): TGCCGGCCGGTCGTTGTCGTCGTCTGAGCATCCAGCTGGTGAGGTGAGGTGAGGTGAGGTGAGTAGACAGCAATGGCGGCGCAGCAGCAGCAGGGAAGAGGCAGTGGAGCTGCGGTGGTCGTTGCGGCGGCGGTGCTCCTCTGCGTGCTCCTCCAAGCCCACGTCGCGGAGTCGGCCGTGTTCACCGTCGGCGACCGTGGCGGCTGGAGCTTCAACACCAACACCTGGACCAACGGCAAGCGCTTCAAGGCTGGGGACGTCCTAGTGTTCAAGTACGACTCGACGGCGCACAACGTGGTGGCGGTGAACGCCGCCGGCTACAAAGGCTGCTCCGCGCCCCGCGGCGCCAAGGTGTACAAGTCCGGCAACGACCGCGTCACGCTCGCCCGCGGCACCAACTACTTCATCTGCAGCATCCCCGGCCACTGCCAGTCCGGCATGAAGATCGCCGTCACCGCCGCCTGACTGATCGACGACACCGCCGCCGCGTGATATACATATATATACATCTATCTATCGACTAGCTGATTGTCAGTTCGAGTGACTCATATGGACTTTTGTTATTACCATCGTTGTTTNCATGGA | |||||||||
gi|18069991|gb|BM330854.1|BM330854 PIC1_57_D10.g1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum bicolor cDNA, mRNA sequence CTGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): AGGTCCTCCAAAGAAAGGACACCACATGGGTGACTTCATTCCTCCAGAAGAACTTGAAAAGTTCATGGCACGCTGTAATGATGCTGCAGCACAAAAGGCTACCAAAGAAGCCGCCGAGAAGGCTAAGATTCAGGCAGACAATATTGGTCATAAACTTCTATCTAAGATGGGTTGGAGGGAAGGTGAGGGTCTTGGTAGCGAGAGAAGAGGCCGTGCAGATCCCATTATGGCTGGAGATGTGAAGAAGGATCATCTTGGTGTTGGCGCAGTCCAGCCTGGTGAGGTCACATCTGAAGATGACATCTATGAGCAATACAAGAAGCGAATGATGCTTGGATACCGCTATAGGCCAAACCCTCTGAACAATCCAAGGAAATCATACTACTGAGTACTGATACAGGAGAGTTCATCCGAGGGGAGATCAGAGAAGTCAAGAAGTTCGTTATTCAGCATATTTCTTGGAATGCCACAGATGTGAGGCTTCTGGGTTCTACGAAGCTTTGTTCTTTGTGTAGTGTTGATCTTTGTGGCTTTAAATGTTGTGTTGAAACGAGTATCATGTTTCAAACCAGTGATATATTGCCTTCTTGGATCCAGTATATTTTTTCTG | |||||||||
gi|57816425|gb|CX617638.1|CX617638 GABR1_34_H05.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_3 CTGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): GCAGCCACTCGCCGGCCTCCAGAAACCGTCACGATCTGTTCATCTGATTGCCGCCGACTTTGGTTTCATTATTTTCTGTTTTCGCGGGGAACCAATTCGATTTAGTTTCCGGAGAAGGAAGAGTAGGATGCAGTGGGCGGGTCTAAGGTCGCAGGCGCCGGTTCCCACGGCGGCGTGGACGGGGCCGAGGCCAAGAATCGCGAGGTGGCCGCAGGGTAGATTCACTGCAGCGCGCCGGGCGCTGGTGGCGTCAGCAGCGGCCTCGGACGCTAATTCGAGCTCGAATTCGCCGGGGAGGGACGAGGAGAGGGAGGAGGTGGTGCAGAGGGAGAAGAAGGAGAAGGCGGTCGCGTCGCTGCTGATGAGGAGCCAGAAGTACGCCATGCTAAAGCAGCAGCTCGCCGTGGCCGCCCAATTTGAGGATTACAAGGAAGCAGCGAGGCTGAGGGACTCGCTGAGGTCGTTCGAGGAGGAGGAGCCCGTGCTGCGCCTCCGCAGGTTGATGAAGAAGGCCATTGACGAGGAGAGGTTTGAGGATGCTGCTAAATACAGAGATGAATTAATGA | |||||||||
gi|6673184|gb|AW283340.1|AW283340 LG1_223_A08.g1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence CTGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): GGCGGAGGTGAGCTCCGCGGACTTCAACGCGTGCTCGGCCAGCAACGCCATCCAGTCCTACAGCGACCAGAACACCAAGATCGCGCTCACGGCGCCCGGCACGCGCTACTTCATCTGCGGCACGGCGGGCCACTGCGGCAACGGCATGAAGCTCGCCGTCACGGTCCCCGCTGCGGCCGCCACCACCCCGCCGGCGTCGTCATCCCCGCCCACCACGCCGGCGGCGCCCGGCGCCGACACGCCTCCGGAGACGACCACGCCGTCCACGTCCACGCCCACCGCGACGTCGCCGCCCACCGCGACCAAGCCCACATCGAGCAGCGCTGCCGCTGCCTGCGGTGGGGAGGCCCGGCTCGCTATGGGCATGTTGGCCGGCGCCGCGGGCCTCGCTGGGCTCGCCCTGATGGGCTAGGCAAGAGGCAGTGCTGTTTCCATGCTTTTCCCGTTGGTTGTTGGAGGCTTGTGGGCTTCTGGCCCATTGTGTTTATTTACTATTTATTACGCACTCTGAATTTCACGTTT | |||||||||
gi|57821550|gb|CX622763.1|CX622763 GABR1_65_G11.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_6 CTGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): AGCAAGGGGAACAGCTGCTCTCTCTAGCTACATATACATATATATAACAACACGTACTACTGCGCGTTGCAACACCCATGGCGGCGGCTCGGGGAAGAGGCAGTGCCGCAGGCGGCAGTAGGGCGCCGCCGCTTGTCGCCGGTGCCGCGTTCCTGTGCGTGGCGGTGCTCCTGCTGGCGGTGGCCACCCCGGCGGCCGAGGCGGGGACGACGTACCTCGTCGGCGACGCCGCCGGGTGGACGCTCCGGCCCAAAGTTGACTACGGCCAGTGGGTGGCCGGCAAGACCTTCCACGCCGGCGACATCCTCGTGTTCAAGTACAACACCACGTATCACGACGTGGCGTGGGTGAGCAAGGGAGGCTACAGGAACTGCATCGTGTCGCCCAAGGGCGGACGCGCGCCGGTGTACCACACGGGCCACGACGCCGTCACGCTGCCCAGGGGCACGCACTACTTCATCTGCGGCACGCCGGGACACTGCAGCGCCGGCATGAAGCTCGCCGTCACGGTCTACTGATCAGATCCATAGTACGTCGTACTACGTACGTCTCCGGCCAGCAGCTTCATATCTTCTCGATCGCGTGTGGGTAG | |||||||||
gi|57808304|gb|CX609584.1|CX609584 ANR1_13_C06.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_13_C06_A002 5', mRNA sequ CTGCACTGCCTCTTCCCTGGC EST sequence (targeted fragment marked with yellow): GTGCTTATCCTGTTGGTATTCTTCTATACCTCCCTTGCTCTCGTCCCTCCCATTGTACCTGCAGTGCAGCCCATCATACTTTAGATCATCATGGCCAACGCCTTGCTGCTCCTCGTGGCGCTGCTCGTCGCCGGGTGCGCGGCTCTGGCTTCGGCCACGTCGTACACCGTCGGCGACGGGCAGGGCTGGACGACCAACGTCGACTACAGCACCTGGGCCTGCGGCAAGAGCTTCGCCGTCGGAGACAAACTAGTGTTCAACTACATGAGCAAGGCGCACTCGGTGACGGAGGTGAGCAAGAGCGGATACGACACCTGCTCCGGCGCCAACCCGCTGAGCGACGACGAGAGCGGCTCCACCGTCGTCCCGCTCCAGACCCCGGGAACGCACTACTTCATCTGCAACGTCCCCGGCCACTGCGCGGAAGGCATGAAGCTGGCCGTCGGCGTCTCCGCCACGCCGTCTTCCGCGGGGGGCGCCCTGCTGCAGGTCCCGGCGATGGCCTCCGTCGTCGCCGCGGCGGCCGCAGGCGCTGCGATCAAGCTCGCGCTCTTCTGACGGAGCACGGCGGCGCGGCTATGGATCGTCAGAGTCGTCTCAGGGAAGAGACAGTGCATGCAGATGGCTATGTTCTTGGACGTTGATGGTTCGTGTAATCGGAGATTACTGTCC | |||||||||