| mature miRNA: CTGCATTTGCACCTGCATCT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|18016482|gb|BI135554.1|BI135554 F054P61Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence CTGCATTTGCACCTGCATCT EST sequence (targeted fragment marked with yellow): CTCATTGTATATAATACTACTAGTTATAGAGAGTGAGTGACAACTAGTAGCTAGCAGTTGTTTGATATAATATGATAAACAGGCTGCAGGTCATACAGGCAATATTATGCATGCCAATATGTTGCCTTTATCTGCATTTGCACCTGCATCTTATTGCGTTTGGTTTGGTATTGAATCCAAAAAACAAATCCAAGTTCCGTGCCGATCCAGAATGTGGGACAATTAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATTTGGGTAATGTTTTCACTCCCATATATACACAGCAGTGCTGCCTCTTTTCTTTTCATCTGTCTGTGGTTAATTTGCAGTTTCATGGTGGCAGAAATATTGTACTGGTAATCATCAAGGAGAAAGGGCAAGAAATTCTTGTGCTTATTAATTAA | |||||||||
gi|18016419|gb|BI135491.1|BI135491 F052P76Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence CTGCATTTGCACCTGCATCT EST sequence (targeted fragment marked with yellow): TAATTTATTATTCTCACAGCCCAGCAACTTCCCTCAGAAAGACGACACACATGCTAGCTAGCATCAGGCAAGCAAGACCCCATCATCCTTACCTCAATTTTCTGGCTCTTTAGGATATAATCTTTTTCTAGAAGGGGTTGGTGTAAATGCAGCAGCTTGGTATAACTTAACCTACTTATCTTTAATCTGATGGGGAAGAAGGG | |||||||||
gi|52495441|gb|CV242466.1|CV242466 WS02515.B21_C05 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02515_C05 3', mRNA sequence CTGCATTTGCACCTGCATCT EST sequence (targeted fragment marked with yellow): TGCAAACAGTCGACACCTCAAATGTTCCTGCTCACCATAGACCAGTCATTACAACATTGACAAGACTATTTAAAGAGACATCAGAAGCTTTGGGAGGTGCCCGTGCAAATCCAGCCAGGAAGCGTGAAATTGAAGATAATTCAAGGAAAATAGGTGCCTTGTTTGCTAAACTCAACAGTGGGGATATATCTGAAAATGCTTCTGATAAGCTTTTTCAGCTATGCCAGGCTTTGGACATGAATGATTTTAGCACAGCTCTGCAAATCCAGGTACTTCTTACCACAAGTGAGTGGGATGAATGTAACTTCTGGCTAGCAACGCTCAAAAGAATGATCAAGACAAGGCAGGGCGCTGGTGTGAGATCAAGTTAAAACACAAAATTTCAAACTACATGATCTCTACTTAGCATTTCTCATTCGACGTGTGCTGTAGCTCTTTTAGCTGGTTGTCTTCTTCGATGTAAACAAAAGCGGCTTCGCTAGACAGAACTGCAGGGCTTTGGATTATTTGCCCTAACTCGCTGTTACAGGAGTAATGCCTTTTGCTACATCGAGTCAGCGCGGATAGTTATCAGGACATTGATGGTATTCCCTTTTCTTTCTTTTTTTTCTCTCCCTCTTTTCGCATTTAACATTTGTTTGTAGTGTTGAGAAATAGAGTTTTGGTTTTTAGTACACCAATGACCAATGTTGCTACAACTCACAATTTTTTGTTGAAGTACAGTGGCATTTAGTTTATCTATTGCTGTCACCATCTGCTGTATCTCCCTCATGATACTTACTATCTATCATGTGTATGAGAAATGGAACTTCTAATAACATGATTGTTATTGAAGTAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|73896793|gb|DT499531.1|DT499531 WS0118.BR_J03 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0118_J03 5', mRNA sequence CTGCATTTGCACCTGCATCT EST sequence (targeted fragment marked with yellow): ACTGAGAGCTCATCGACCTCAGATGCAGCTGCAAATGCCCACAAATCCTGTCTTCAGAGATATGTTACTGCACTACCCATGCCTAGGAATCTTCCTGACAGGGTACAATGTCTTTCACTTTGATAATTGATTAATTGATTTTCTACCTTCTTGGCTAATTTCTCCAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|73886656|gb|DT489394.1|DT489394 WS02542.B21_B17 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_B17 3', mRNA sequence CTGCATTTGCACCTGCATCT EST sequence (targeted fragment marked with yellow): CCACCCCCCTCCCTCTCTCGCTCTATAAATCTTTCCTGGCACTCGGGAAATTTGTCAGAGCCCGGAGGATGAAAGATCAGAGAGGCCAAGCATCGATCGACTAGTTGTTTGGCGTTGAGTAATATTATAAACAGACCAGCATGCCAACATGTTGCCTTTATCTGCATTTGCACCTGCACCTTACTTGTTTCTTTCTTTTGTTTTTGACTCCAAAACCAAAAGTAAGTTTGAAACATTAAAACAAGCTTGAGGTGCAGGTGCAGGTGCAGGTGAATGCCATGTTGGTGTTTTGACACTTGTCGTACTGCCTCTTTACTTTCCTTAATTTGGTCCCTGTGTGGTAACTCGCAGCTTCAAGCTGTCACAAATGTACGGGCTTTTTTATATCTTCAAGGGAAGGGTTAGAGAACTCTTGTGCTATAATCCAAGAGAACAAATGGGTTTTTCAACAGCGACCGAGTCTGACCATTAACTTCTTTATGTAGGTGGCTGGTGTTTATAGAGGTGATGATGATGAAGACATCGTGCAGCCACAAATCCATGGTTGCGGAAGACTATTTTAAGGGTTTTTTGGGAGATCTTTGGTGTACATGAAGGACGGATCCATGAATATGCAAGCTGGTGCCTATCCTAGATATATAGTTCTCGATCTTCCACTTGGGCGCTAGGGTTTTCAAGGTAATATATAGAAATTACATTCAACTAAAAAAAAAAAAAAAAAA | |||||||||
gi|18016871|gb|BI135943.1|BI135943 F060P88Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence CTGCATTTGCACCTGCATCT EST sequence (targeted fragment marked with yellow): CTCATTGTATATAATACTACTAGTTATAGAGAGTGAGTGACAACTAGTAGCTAGCAGTTGTTTGATATAATATGATAAACAGGCTGCAGGTCATACAGGCAATATTATGCATGCCAATATGTTGCCTTTATCTGCATTTGCACCTGCATCTTATTGCGTTTGTTTTGTTTTTGACTCCGACAAACAAAATCAAGTTCTGTCGATACAGTATGTGGGACAATTAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGGTAAATGCCATTTTGGTAATGTTTTCACTCCCATATATACACAGCAGTGCTGGCCTCTTTTCTTTTCATCTGTCTGTGGTTAATTTGCAGTTTCATGGTGGCAGAAATA | |||||||||
gi|73889107|gb|DT491845.1|DT491845 WS02548.C21_P13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02548_P13 3', mRNA sequence CTGCATTTGCACCTGCATCT EST sequence (targeted fragment marked with yellow): CAGGCAATATTATGCATGCCAATATGTTGCCTTTATCTGCATTTGCACCTGCATCTTTTGCGTTTGTTTTGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATACAGTATGTGGGACAATTAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATTTTGGTAATGTTTTCACTCACATATATACACAGCAGTGCTGCCTCTTTTCTTTTCATCTGTCTGTGGTTAATTTGCAGTTTCATGGTGGCAGAAATATTGTACTGGTAATCATCAAGGAGAAAGGGCAAGAAATTCTTGTGCTTATTAATTAACTATGAGAGCAAATTAATGTGTTCAACAACGACAGGCCATGTATAAAATTCTTTATGCAGGTGCTTGGTGTTTATAGAGGTGATGATGAATTGAAGTGATTGTGCAGCCACAATTCAATGGAAAAAAAAGAATATTTCAAGGGTTTTCCAGTAATCTTTGAATTAAGTACTTGGAGGACAGATCATCCATGATCAATACGCAAGGCGCCTGTGCTAGATATGTAGATCTCTTGATCTTCCATTTGAAGCTAGGGTTTTCAAGCTAATATATATAGAAAGTACATTCCCTCTCTGCATCCCTCCCTCCCTCCCTCTCTCTCACTGTCTCCCTCTCTCTCTCACACAGGCAGTACCATTGCCAAATAGGAGGAACATCCATTCTAAGTTCTAATGTTGACATTGGTTGTTCTACAGTTAAAAGTCTCCATGATTGGAAGAAAAGTCGAGCACAAATATTAAGGATTTAAAAAAAAAAAAAAAAAA | |||||||||
gi|24060295|gb|BU869198.1|BU869198 M127C02 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence CTGCATTTGCACCTGCATCT EST sequence (targeted fragment marked with yellow): TTTTGTGGTGCCCTTGAACTTTACGCCCTTAAACTTCTTTCTATGTCTCATCGGTCACTTTTTCCTTGTGGAAATATGTCAACCGGGAGACTTGCCACAACATGCATGATGAGAAGCGCACCCCCAAGTAACAGCATGCAAGCGCAAGCAGATCATGTGCCTTGATCAAGAGCCCGGGTGCTTAGGGTTCTGGAATGAGCGTGTCTAAAGCATTTGGCCTGAAGTCTTCGTCCTTCAAAGTATCTGCAGATGTCAACACTACAAAGCGAAACTGATCATGCCAGATGGATGTGAGCACGAATTTGACGCCCCTGATGATACTTACATCCTTGATGCAGCTGAAAATGCAGGA | |||||||||
gi|73886945|gb|DT489683.1|DT489683 WS02542.B21_O10 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_O10 3', mRNA sequence CTGCATTTGCACCTGCATCT EST sequence (targeted fragment marked with yellow): CATACGTACTCAAACCGTCTAGCCTTGTTTAGAAAGTGCATATATAGCACTACTTGTGCTTCATAGGATCATCAGTACTCGAAAGATTACTTGTTTTAGCGATTTAAGGGACTGTCAGTTTTGCACCATGGAGAAGTCTGACCTGGACCTGATTGGCATTTCAGGATTGCCCACTGAAGAGTTCATCCAACAAAGATGAATGCAGATGATAAAAACATAGAACCTGTGACTGATCAGTGCTTTCAGAGAAGAGTGAAGAATGATTCAGGTGCAGGTGCAAATGCAGGCTCAAGTGTAGACAAGACATTTGCGGCCACCAATGCCCTGTCTGAACTAGTTTGGTCTCCACAGAAAGGTTTGTGTCTTAAATGCGCTGATGGAAGCTTCTCCTACAAAAATCCCTCTCTGTTATGGGGTGCAGGCCCAAGTAATATGGTAAGTGGATCAAGTACTGACAAACCTATCAGTAAAGAATATTTCTGGACAGCTCTAGGTGCATCTGATGTGAACAGTGAAGTTGCTGGAAGAGACAATTCCACTAAATTTGTTACCAGTGATACAAGCATGTTTCCGTCAAGTGAATCTAGACATGAAATCAAAATAGCTGGACCGAACCTGGATGTGGCAAAGAATGATCCGACTTCCGAGGAACCTATTGTCAGAATTAGAGATGTTGGTGACGGGATTCACACATTACAGACAGAAAATGTTTCGGCCTCACAACTTTGCTCAGTGAAAGAATGTGAATCTTATGACATTAAAATGCAAGCACCATCCTCAGGAAGAGAAAATTTTGAATCACCTTCATGCATGGAAAAGGAGAGAGAAAAGATAAGCTAGGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|18018542|gb|BI137594.1|BI137594 F089P08Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence CTGCATTTGCACCTGCATCT EST sequence (targeted fragment marked with yellow): CTCATTGTATATAGTACTACTAGTTATAGAGAGTGAGTGACAACTAGTAGCTAGCAGTTGTTTGATATAATATGATAAACAGGCTGCAGGTCATACAGGCAATATTATGCATGCCAATATGTTGCCTTTATCTGCATTTGCACCTGCATCTTATTGCGTTTGTTTTGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATACAGTATGTGGGACAATTAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTAAATGCCATTTTGGTAATGTTATCACTCCCATATATACACAGCAGTGCTGCCTCTTTTCTTTTCATCTGTCTGTGGTTAATTTGCAGGTTTCATGGTGGCAGAAATATTGTACTGGTAATCATCAAGGGAGAAAGGGCAAGAAA | |||||||||
gi|18018510|gb|BI137562.1|BI137562 F088P25Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence CTGCATTTGCACCTGCATCT EST sequence (targeted fragment marked with yellow): GCAGTTGTTTGATATAATATGATAAACAGGCTGCAGGTCATACAGGCAATATTATGCATGCCAATATGTTGCCTTTATCTGCATTTGCACCTGCATCTTATTGCGTTTGTTTTGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATACAGTATGTGGGACAATTAGATATGGAAACTAATAAGCTTAGTAGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATTTTGGTAATGTGTTCACTCCCATATATACACAGCAGTGCTGCCTCTTTTCTTTTCATCTGTCTGTGGTTAATTTGCAGTTTCATGGTGGCAGAAATATTGTACTGGTAATCATCAAGGAGAAAGG | |||||||||
gi|38585866|gb|CK101541.1|CK101541 F095P16.5pR Populus flower cDNA library Populus trichocarpa cDNA clone F095P16 5', mRNA seque CTGCATTTGCACCTGCATCT EST sequence (targeted fragment marked with yellow): CTCATTGTATATAATACTACTAGTTATAGAGAGTGAGTGACAACTAGTAGCTAGCAGTTGTTTGATATAATATGATAAACAGGCTGCAGGTCATACAGGCAATATTATGCATGCCAATATGTTGCCTTATCTGCATTTGCACCTGCATCTTATGCGTTGGTTTCGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATACAGTATGTGGGACAATGGACATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATGTTGGTAATGTTTTCACTCCCATATAT | |||||||||
gi|73880228|gb|DT482966.1|DT482966 WS02521.B21_E11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02521_E11 3', mRNA sequence CTGCATTTGCACCTGCATCT EST sequence (targeted fragment marked with yellow): GAAAAACAAAGATACGACACGCAAACAGAAGTTAGAGAGCGTTTGAAAGTTTCGAATCTTTCCAGGTTATCACCAGAAACAAGAAGGAAAACATGGGTTCTGAGCAAAACGAAGGTACAAGCTTTCCATCGTCACAGCCACAGCTTTGTGCTAATGGATGTGGTTTTTTTGGCACGGCTGCAAACATGAACCTTTGCTCCAAGTGTTACCGTGACCTTCGTGCTGAAGAAGAGCAAGCTGCCTTTGCTAAGGCTGCTATGGAAAAGACGCTAAACATGAAGTCACAACAACATATTGACTCTAGGGTTGCTGTTGATGCCCCTCAAGTTGCGGTGGCTAATTCCATGCAATCCGCTGAAGCCTCTTCTTCGGCAGAAACTGCTGTTGCTGCTGGCGATCAGGTGTCATCGAAGCCGGCAAATAGGTGCTTCAGCTGCAATAAGAAGGTTGGCTTGACAGGATTCATGTGCAAATGCGGTGGCACATACTGTGGGACTCATAGGTACTCTGAGAATCACGAGTGCTCCTTCGATTTCAAGGGTGCTGGCCGTAATGCTATTGCCAAGGCGAATCCTGTGATTAAGGCTGATAAGGTGGGGAGGTTCTGATGCTGATCCTTAAAAGGATTGGTGAATTTGGTATTGTTCTTTTTTTCAGGGTTCGGTTTTAATTAGGAATTTAGTGCTAGTTGGTTCTGAATGGTTGCTTTTTATACTGGTTATGGTTGAGTGTTTTATGGGGGATGGTGGAGATTAGCAGGGGAGCACCAGGTGAATGTATTTGGGGGGTTTGTGGATGGTCGATTCCATAATGAAGTGGATCAATGGATTGTTAGTTGCAATTTGGTTTGAATGGCTTTCCTCTCTTGTTTCCCAAAAAAAAAAAAAAAAAA | |||||||||