| mature miRNA: CTGGTAGTTTTTGCCTGCTG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73885462|gb|DT488200.1|DT488200 WS02535.B21_M11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02535_M11 3', mRNA sequence CTGGTAGTTTTTGCCTGCTG EST sequence (targeted fragment marked with yellow): GCTTTCTTTCTGCAGGGCTGGCGGCTTATGGAACACCAAACTATGGCTTCTTCTATCACCCTTCAAAGTACTCTACTTAGGTCCAACTTTCTTGGTCAAAACAACTGCTTCAATCATCCTCATAAACCATACTCTTTGATCCCCAAAGATCATAGGCTGAAACTTAAAACATGTGCCAAACTTGACCTTTTCGAGATCCTGGGAGGCAGAGGACTCTGTAATGGAGAAAAAGGTGTGCAACAAGAACTAAAGAGAAACATTGAAGAACAAGCATCATCAACTGCTGGTAGAGAAGAAAATTCAGGTAGCTTGGAAAAATCAAGTGTGCCGGATGATGCTTTTGAAAAAGAGCTGATGGGATTAACAGGGGGTTTTCCAGGTGGAGAGAAGGGATTGAAAAGATTCATTGAGGAAAACCCATCTCCAAAGAAACAATCAGTTCCGAAGCTTACAATCACAAGCAGGCCAAAACCACCAGAACTGCCACTGCTGTTGCCTGGTATGATTGCCATTGTGAAGAACCCGAATAACCCATTTTACATGTACACTGGCATTGTTCAACGAATCACTGACGGAAAGGCTGGAGTTATCTTTGAAGGAGGAAACTGGGATAAGCTAGTTACTTTCCGCCTGGAAGAGCTGGAACGTAGGGAGAAGGGCCCTCCAGGAAAAAATCCCAGGTCCGCAATAATTGAAGCATTCTATGAAGCTGAATCACAATCATCTTCCTAATTACATTTTCCTGTTGCAAATAGTGTTTGCTCAAATCCTTTGAATATGTATCAATTCCAGTTTAGACAGAGCAATAAACTCCATTTTGTAACAAAAAAAAAAAAAAAAAA | |||||||||
gi|60711260|gb|DN501070.1|DN501070 UM57TG08.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM57TG08 5', CTGGTAGTTTTTGCCTGCTG EST sequence (targeted fragment marked with yellow): GCTGCAGATTGCTGCTATTTGCCTGTCTGATAATCCTGCAAATAGACCTACCATGCTCAAAGTGTTGAAGTTCCTGAAAGGGATCAAAGATGAGTAGGTGAAAATTATCAGTGCCCGTGTTCATATCAAACCAGTTGTTATAATAACCCCCTAACATGTGTAGGAAGACGTGTTAGAATCTGAAGTTGCTGTTAAGAGTTTAATGTTTCCTAGTCCAATCTTAGTTCAGTCCATAGTTTCAGTTTCAGAGTTGATTGTCAATGTTATAAGAACTTAATGAGCATCTTTGAGACCATTGATGAGCAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|73884511|gb|DT487249.1|DT487249 WS02533.B21_C24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_C24 3', mRNA sequence CTGGTAGTTTTTGCCTGCTG EST sequence (targeted fragment marked with yellow): GGCCGGGCAGTTGCATCCCTTTTGAGAAGGCTAGGACTACCTTACCAAGGGAATGAATCATACGGGAAAATTAGAATCAATGGGATTTCCTTGAGAAGATGGCTTCAGCCAAAGCTTGATTCTCCTTTCAGTGGAAAACCAGGAGAATGGAGTACATCCCTGTCACGACTAGGAAAAGGAATAAGCTTCCAGCAACGCAATATTCGCACTGGTGATTTTTCTTTAGAATAAAAAGGACACAATTTTCTACCAACGGAAACAGATTACGTTCACAAGAGAGTACCTGTTCTTGCATGCTATGAGGGGGGACGGTAATTCAGAAAAAAACAGTAGATTTCCAGGAGACAAAGAAGAAGGCACACCAGTTCAAAACTACCAGAGCTCCTCTTTACCCAACTGGCCTACCTGCTAAACAAAAGGACCATCCACCAAAGGTATCCGGTGGTTACAGTCCCCATGCTAAGAGAAGGATAGACAACTGATTGCAAATTGAGCTTTACACTACTACTACTACTTTAAAATCAGCCTGGTGATTACTGGTCATTCGTTTTGAAGTAGTAACTTAGAAAATCTTTACAAAATTCTAGAACTCTGTATCAGTCCGATATAAGGATCAGTGCTCTCAAGTAATGATGTAATATTTATTCCTCTTCCTCGTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|18005310|gb|BI121335.1|BI121335 F034P53Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence CTGGTAGTTTTTGCCTGCTG EST sequence (targeted fragment marked with yellow): ATACTACTAGCTAGCTATCTATCTACTTATCTAGGGTATCAATACCTACAAAAACCCTACATAGGAATGGCGACCTATACCCTACCTATACAGAATACAAAAACTACTAGATACCATACCGCGCCGAGACCAGATACGTATCCTATACGAGGGAATCGACGTAGAACAGGTTACCATCTACAGCTAGATTGTAGAAGAGGAGGCAGGTAGTATACATCTACCAAATAGCACGATATACGAGTATAAGTAGGAAAGGAGAAGCGAAAGAGAAGGGATATAAACGGAGAGGAGCATGAGATGGAGAGAGATATATATCTACGTGGAATACAGTAGATAGAAGAGGATAGGTAGATAACCTCGAGAAAGAAGCTACAGGCTACTACTAAAGATACAGGCAGCTATATACTTGAAGAAAGTTTTAAAG | |||||||||
gi|52497810|gb|CV244835.1|CV244835 WS0255.B21_M04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0255_M04 3', mRNA sequence CTGGTAGTTTTTGCCTGCTG EST sequence (targeted fragment marked with yellow): GAAGACAGACTTCCTTAGCATGGCAATGAAGGGCACAGCTGCCAAAAACTGCCATGGCTCTGACCATTGGAGCTTCTATCCTAGGGCACCGGTTGAAAACTGGGGCTAGCAAGGAAAGGTTGAAAGTAAAAACAGCTATTGCTGCTGCCGTTGACAGATACAGCCCAAGCCAGGTCAGTGGCAATGCTGGCAGTAATTGTGGTACAGAGATGTCATGGGACCCTCTTCTTATTAAGGCTAGTGGAAGCAAATCATCTACCAGTGTTTGTTTCTAACAACACAAACTGTGAGTGGAATGGAATAAAAAATACGGCAGCAGTATTCATGGCGAATAATGCCAAGATTTGGAGATTAAAACAGTCAGTTAAGCCTATAGCATGTAACATATGAACTGTTTGTTTCTTGTGCGTTTTATGTAACATGAGTTGCAACTCAATTATAAGGGCATCTCCAACGTAGGAGGCAAAAGAAAAGTCCTACATATCTCCATCAAAGTGGAAACAATAATAATAATAAAAAAAGCAGCCATGTGGGGAAAAAAAAAAACTTCAAACTCTTTAAAGAAAAAGTGAAGTATTTCTTTCTCAATGTTCAATGCAAAAAAAAAAAAAAAAAA | |||||||||