| mature miRNA: CTGTTAAGCTCAGGAGGGATA species: Carica papaya database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|186786963|gb|EX272417.1|EX272417 1452814_5_J04_008 PY06 Carica papaya cDNA, mRNA sequence CTGTTAAGCTCAGGAGGGATA EST sequence (targeted fragment marked with yellow): AACATTTTATTTTTTGTTCCGCAGCCGGGATTCGGCCTTACGGCCGGGAGCTCTTGACCTTTGGATTATAGGATCTTAAAAAGAGAAAAGATAAATTGTTTCCCAAACTAAAGTTGATTCCGGACAAGAATATAGAGTAGGGACCAATTTAAGTCTTAACCCTGCTGAGCTGAACAGCCTAATAACATACAACTTGCCTTAACTTACACTGCAGTTTCGTGGTAATGGTAAGACCTCCTGAAGGCTTGAGATTTTATCTACTATCAACATTGAAAGCCTACAAAGTCCTTAATTTTTGTGGTTGTCCTTGCTTAATAGTTGGTGCTCAGGAGCAAGTCTAGTGGATATACCTTTCTGAGGTCAACCTTCTTTACGATTGTTGATTATTTTAATAAATAGATTTTAAATAGCGTTGTTAAATTTGTTTTGTTGTCTTGATTCTGAAACTGTTCCAACTGATACAGCTAACTTATTACAGAATGGGAATACGATAGCACTTCAGGCTATTATTACAACCAAACCAATGGTCTGTACTATGATTCAAACTCTGGATTTTACTATTCTGACGCAATAGGCAAGTGGGTGACCCAAGAAGAGGCATATGCTGCAAGTAATGTTCCATCAGACAGGAAAGTTAAAGAACCGATAATGAAAAAGCAGTTATCAGCTCCAGGCAAGGAGAAAAGAGATGTTGCTGAAAATCAAAACGGGGCAGCACCAGGACGGGTAGTTTCAGCTTCTTTGAACCCCAATAGGTCTGTGAAAGGTGCTCCTTCTTCACTTCAAGTTGGGAAGAGAAAAAGACATGACGAAAAGCCAAAGAAAGTATCCCGGAGAGGAAGCAGCTGCCCTTAAAGCAAGGGAGCTGCAAGAAAGAGAGTGGAAGTGAGAGAGAAACCTTTACTTGGCCTGTACAATCGGCCTATTTGATTGAAGAATTAAAAGATAACTCCCTCTCTGACGCAAGGGCTATGCTCCAGCATGTTCTGTGTTTTAATCAGATTTTCAACACGTAGTCTACTGTGTAAAGACCATACTCCATAGCCTCCCCTGTTGGTGTTTGTAAGTAATTCTGGCCCCCCCCCTCTTTTCC | |||||||||
gi|186828865|gb|EX282861.1|EX282861 1569816_5_A06_031 PY06 Carica papaya cDNA, mRNA sequence CTGTTAAGCTCAGGAGGGATA EST sequence (targeted fragment marked with yellow): TCCGGGGGGGGAAGAATGGCTCTTATTACTAGCACATTTTCACACTATATTCTTTCTGAGCTTAACACAGAGAATATAACAAAACATATGGAGCATAGTTGTTGAAGTAAACATATACATCGCGTATCCAAATACCTTTTTGGTGCAGCTCCCCTTGCAAATTGAAGAGCAGTCAGATTATCAGGCAGCAGCAGTTGGGATTAGTTTCTGCATTTTTTCAGTTTTCTTTTTTAGCTTCTGTTAGTTTAACTGCTGATATGACTGTATTGGTGAATCCAATTCAGTGTACAGAGAGGGGTGCGGGTGTAGGGGATGTTTGATGAAATACAGATTTCATGTTCACATTTGATACAGGTTCAAAGAATGTTTAAGAATTAATTGTTCGTGAATTTTAATAAAAAAAAGGCTTCCTCGGTTCTGGGGGGTTTTGCTTTAAATGCAGGAGGGGCGCGGAGGCAGGGAGAAACTGAAATTGGTCATAGCTGTTTCTTAGGAAATGTTGGTCATGACTAGAGCTTGT | |||||||||
gi|186796651|gb|EX274957.1|EX274957 1455746_5_D08_030 PY06 Carica papaya cDNA, mRNA sequence CTGTTAAGCTCAGGAGGGATA EST sequence (targeted fragment marked with yellow): TCTTTTATTATTTATTTTGCCGCTTGCCGGGGGATCGGCCTTACGGCCGGGGGCTTTCATTCTGATTTTATCAAACCGGAAGACCTCTTTCTCTATGCTCTCATGACTCTCTCAGCTCTCTCGAGGGTCACTCCAACTTCTTCTTCTTGAGCTTCACAGCTCATTTAGATTTTCTACAAATCTTTAATTGCTTCCCGTTTAGTTTCTCAATAGAAATAGAAATTGAGGGTACAATTTGTAAAGAACTGACCTTTGTAAACGGGATAGGAAAAACCACGAGGCAGTTATGCACTTAAAAGGTGAAGACAACATGCAATAGTGAAGCGGTCCCTTTTTCAATCCTCTCTTTTTGTCGTCTTTAGTTTCTTTTGTCTCTCTCTCTGAATTTAATTTGCTTCTCAGTCTTCTGTTCTTCTTAACGGAAGCCGAGAGGAAAGAGGTGATTTAGAAAGAGAAAGCCGATTGGCAAGGAGGTGGGAGGCATCGAGGAGCCGAGGGAAAGTAGGAGTTAGGGTTTTTTTTTTCTTTATTTCTTCTAGCTTGTCAGGAAGAGAACAGCTTTGAGGGGTTTAGGGAATGCTAGTTGAAAGAGAGATTAAGAAAGAAGAGATTAGGAAACAATTTGGGGGGTGAATGAGAGCTTTTAAGAGAGGCTTGTGGGTTTTGTCAGAGAGTGAACCGAGGAGAAACCGGCGTTTGAGAAAACATAAAAGGAGCTGTGGAATCTGGGGAGCACTCTGTTCTCAGTTTCTGGGAAGGGGTTAGAGAGATCATATTGAGGAGTCAAGGATGGATGATACGATGAAGCAATTTCAGCAAAGATTGACCGAGCTTGAAACAGAAGCTGAGCATCTTATTTTGGGCCGACGTCAGCTCGTTGAAAATGATAAAGAGAGGAATGCAAATAGGGAAGCTCTTACTGCTCTACGGAAGAGAGCTCAGACACAAAAACTAGTGTTCCTTCTCCTTTCGAGTCCATAATGAAAGATATGGGGGGCCTGGGTAAGCTCTGTGAGAGTATGTTCAACCTGTGCAGCATGATGCTATGAACTACAATGGATGATGTTCCCAGGAACT | |||||||||