| mature miRNA: CTTACATCGTGAAATGGAGGG species: Panicum virgatum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|169708376|gb|FE636592.1|FE636592 CBYY13657.b1 CBYY Panicum virgatum Kanlow crown Panicum virgatum cDNA clone CBYY13657 5', mR CTTACATCGTGAAATGGAGGG EST sequence (targeted fragment marked with yellow): AAAGGAGTTTGCAATTGACAGTGTTGCAATCATCCTATGTGGTTTGAGCCAATGTTGGGTCTATAACCAACTTAGCCATGTTTCAGTTAAGTTCATGTGATGAAGGAGGACATATCTAATACAAACCACCAACTGTTATGCTAAATCCTCCATATCATGATGTGAGAAAAGCACTGTAGTTGCTGTTGCAAGCAAGCAAGCAATAGTTTCATCTGATAGTTTTGATGCGTCACTCATCCTTTTGGTGCCCTCTTCTTGTTTGTGTTTGTGCGAATAGGACTAGTAGTTTAGTTGATTTATGTTCAGCTACAATTAGTCACATTATTTTTTGGAACATAAACCTAGACAAAACCTGCATTGCCGCTTGATTAGTTGATTTATTCCCCACAGGTTGTTTATTCATTTCCTTTGGAATGGCTCCAAAATATGTTTTGGAATGGACCATGGGACTGCTGACAGCAAAAAGGACAAACAAGCAGCTCTTTTTACGTTTTTCATGAATTAGATGCATGAACACCATGGAATGCTTTGGCTGACATGTTTTTCCATTGTCTAGTCTGTATAGCTGTTCTTTCTGTTTCTGAATTTCCCTGGGAGATATTTTTTCTGTTTTGCAGGAGAGAGTTGCAGCAGCGCAAAAGTTTCACTCGAAGGAGGCAGAGGAAGAGGCAAAGAAGGTACCTGTTAAAACCTTTACTCCTGGACAGCTAGATGCTCAAGACACCATAAACGAGGTGCAGGCTCCTAAAG | |||||||||
gi|198300420|gb|FL966469.1|FL966469 CCHY7638.g1 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY7638 3', mRNA s CTTACATCGTGAAATGGAGGG EST sequence (targeted fragment marked with yellow): ATCCACATTTAAGATCCCAGTATAAGGCCACCCTCAAAGATTCAGGTGGTCCGGGCTCAGGTTCACCATAAAGCTTCCAGTGCCCGGAGGACTAGAGGGCTGTCGTCAAATTTGCTACCAGAGACATATGACGACATAGTAGCTGTTGGGTTGGCAAATAATGGTTCTCATTTGCAGTCATCTGGACAAGCAGAAGAAAACAATATGGAGTCAGAAGGCTTGGATGAGGATCTGGTAGAGTTTGGCTCTGGTGTTCTCGATCCCAATTTTATTGAGAACTTGAGTGAAGAAAACATTGCGCTGTTTTCAAGGCGTGAAGAGCTTCAACAACGAGATACACAGTTGAAGCGGAAGATTGGGGACCTGGAGCATGAACTGGAGGAAACAAAAAGGAAGTGTGGTCAGCTTGCTGCGGAGCTGAAGGTGCGGAAGAATCAGCTGAATCTTCCTTCCATGTGAAGGGCATATTTAGGACTGAGGACACATGACAAGAACCAATTCTAACAACGAACTGGAAGGAGTTGAGAATTAAGTGCTGATGAAACAATTATTTTGGTTAGTACAGAAGTAGGCTGACTAGTTGAGCTGAAAAAAAGGTGTGAGATGTAAATTTTAATCAAGTGTAACAGAATGGTTATGTAAATTTTGACGACTGATTCCTACTGTTAACTTCCATTGCACGATGTAAGGCCTATGTTCCAACCTTTTGAACATCAGGTACAACTAAAATCAGCTGATGAGCAATTCAGAGTTACTTGATAT | |||||||||
gi|304516580|gb|HO311887.1|HO311887 CFHA2266.g1 CFHA Panicum virgatum K101 normalized leaf Panicum virgatum cDNA clone CFHA2266 CTTACATCGTG-AAATGGAGGG EST sequence (targeted fragment marked with yellow): CGTGAGCCAGTATGTAAAGGTCGGGGGTCTGGCCCTTCCTTCAAACATGCATGACCACAGTCATGGGGATTGCCCCCATTCCAGTGGGAGGGGGGATTGCTCGACAGTTTTTTTCTCCAGAAGCAATTCGCAATTGGATGGGCAGCATGATAACCCCCAAGAAGATGCCAAGACTCATGAATTTTCAAGAGAAACTAAAAATAAAAAGGACGGGGAAGAGCAGATGGCCGGCTGTTTTCACCCTGTTGGCAGCAACTTGGGAACATCCCAAGGGGCATGTAACAGTGAAAAAGATGGGAGCAAAGCTGCTTACTGTCAAAAAAAAAATGTCTTTTCATTTTTTGCTGTTGATAATGTAAGCTCGCTCCATTTGCATGATGTAAGCTGTTGATAGTTTTCAATTGCATAATGCGGGATATTTTTATGCGATCATATTTGAATTTC | |||||||||
gi|304518584|gb|HO317969.1|HO317969 CFHA5580.g1 CFHA Panicum virgatum K101 normalized leaf Panicum virgatum cDNA clone CFHA5580 CTTACATCGTGAAATGGAGGG EST sequence (targeted fragment marked with yellow): AAAGATTCAGTGTCCAGCTCAGGTTCACCATAAAGCTTCCAGTGCCCGGAGGACTAGAGGGCTGTCGTCAAATTTGCTACCAGAGACATATGACGACATAGCAGCTGTTGGGTTGGCAAATAATGGTTCTCATTTGCAGTCATCTGGACAAGCAGAAGAAACACAATATGGAGTCAGAAGGCTTGGATGAGGATCTGGTAGAGTTTGGCTCTGGTGTTCTCGATCCCAGTTTTATTGAGAACTTGAGTGAAGAAAACATTGCGCTGTTTTCAAGGCGTGAAGAGCTTCGACAACGAGATACACAGTTGAAGCGGAAGATTGGGGACCTGGAGCATGAACTGGAGGAAACAAAAAGGAAGTGTGGTCAGCTTGCTGCGGAGCTGAAGGTGCGGAAGAATCAGCTGAATCTTCCTTCCATGTGAAGGGCATATTTAGGACTGAGGACACATGACAAGAACCAATTCTCACAACGAACTGGAAGGAGTTGCCAATTAAGTGCTGATGAAACAATTATTTTGGTTAGTACAGAAGTAGGCTGACTAGTTGAGCTGAAAAAAAGGTGTGAGATGTAAATTTTAATCAAGTGCAACAGAATGGTTATGTAAATTTTGACGACTGATTCCTACTGTTAACTTCCATTGCACGATGTTAGTAAGGCCTATGTTCCAACCTTTTGAACATCAGGTACAACTAAAATCAGCTGATGAGCAATTCAGAGTTACTTGATAGAAGGAATTCTCAGCC | |||||||||
gi|304516579|gb|HO311886.1|HO311886 CFHA2266.b1 CFHA Panicum virgatum K101 normalized leaf Panicum virgatum cDNA clone CFHA2266 CTTACATCGTG-AAATGGAGGG EST sequence (targeted fragment marked with yellow): ATCCATGAATGCAGCTTTTATCATGAACATGCTTGAGAAATTTGAACCTCCTTTCGACGTGAGTCAGTATGTAAATGTCGGTGGTCATGACCATCCATCAAACATGCATGACCACAGTCATGTGGATTGCACCCATTCCAGTGGGAGGGGTGATTGCTCGACAGTTTCTATCTCCAGAAGCAATTCGCAATTGGATGGGCAGCATGATAACCCCCAAGAAGATGCCAAGACTCATGAATCTTCAAGAGAAACTAAAAATAAAAAGGACGAGGAAGAGCAGATGGCAGGCTGTTCTCAGCCTGTTGGCAGCAACTTGGGAACATCCCAAGGTGCATGTAACAGTGATACAGATGCGAGCACAGCTGCTTACTGTCAAGATAAAGATGTCTCTTCATCTTCTGCTGTTGATAATGTAAGCTCGCTCCATTTGCATGATGTAAGCTGTTGATAGTTCTCAATTGCATAATGCGGGATATTATTATGCGATCATATTTGAATTTCGAAA | |||||||||