| mature miRNA: CTTCCCATCCCATCCATTCTT species: Picea glauca database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|211879524|gb|DV983205.2|DV983205 GQ0198.B3_M09 GQ019: Clean ROOTS systems - P treatments Picea glauca cDNA clone GQ0198_M09 5 CTTCCCATCCCATCCATTCTT EST sequence (targeted fragment marked with yellow): AGCACATATTGTTCGGACATTTTGGGGAGCAGGAAGGGAAGGGAAGGGAAGAGCGAGGGACTGTAAGAAGAAAAACAGAGAAGAGAAGCAAAAGCGAGGGTTTTGAGTTTTGGTAAGAAGGAAGAGAACAGACAACCATGGCACCTGATCCAGAGGAAGACTTGAAGGAATCGAACCCCAGACCTCTTGACGAGGACGACATTGCTTTGCTCAAGACCTATGGTTTAGGCCCTTATTCGACCTCCATAAAGAAAGCAGAGAAGGAAATCAAAGAAATGGCAAAGAAGGTTAACGATCTTTGCGGGATAAAAGAATCGGACACTGGCTTGGCTGCTCCCAGTCAATGGGATCTTGTTTCTGACAAGCAAATGATGCAAGAGGAGCAGCCTCTGCAGGTTGCACGGTGCACTAAGATCATTAATCCAAACACTGAGGATGCGAAGTATGTTATAAATGTTAAGCAAATTGCTAAGTTTGTGGTTGGATTAGGTGATAAGGTCTCCCCGACTGACATTGAAGAAGGGATGCGAGTCGGAGTTGATCGCAATAAGTATCATATTCAGATCCCCCTGCCTCCTAAGATTGATCCCAGTGTGACAATGATGACCGTTGAAGAGAAGCCAGATGTTACCTATAATGATGTTGGTGGTTGCAAAGAACAAATTGAAAAGATGAGAGAGGTTGTGGAGCTTCCCATGCTTCATCCTGAGAAATTTGTTAAGCTTGGAATAGATCCTCCAAAAGGTGTCCTTTGCTATGGACCTCC | |||||||||
gi|292510942|gb|GW729634.1|GW729634 WS04810.CR_J24 WS-CRD-33 Picea glauca cDNA clone WS04810_J24 3', mRNA sequence CTTCCCATCCCATCCATTCTT EST sequence (targeted fragment marked with yellow): GGGGATGAAAGAGGAGTATAAGACTCTGAGACTGAGCCCCGGGGCTGCTGAGAAAGATATCAAGAAAGCCTACCGTCGCCTTGCGTTGCAGTATCATCCCGATGTTTGCAAAGGAGATAACTGTGGGGTTCAGTTTCAGAAGATCAATCAGGCTTATGAGACTGTAATGTCCAGTTTGGCAAAGGCAAAGCAACAAAGCTGTTCTGCCGATTACTATGTGGAGGGTATGATGGGAGTCAATAACGATTCTTGGGACGAGTGGGAAGAATGGATGGGATGGGAAGGAGCTGGAACCCTTGATTATTCCTCCCATATTAACATTTATGCCTGATTAAATCTTCATCATAAACTGTATGGGTGTCTGTTGGCTGGCCTTGTAAACAGTTATGGCCTCTTCATGACGAATACCATGTTGACTGGTATGGGCTACCTATGAAATTTTTGCTTTTGGCCGCGTAACAACTGCCTTAGAAGCCCATAAGGCTTCTCATTCATCTCCTGGAAATACAATGTGCTCTTCTACCTGTAAAGCTGATTTTATTTTTCTAGGGTTGCCTCCCACAGCAAAAAGGACTTATTGATCCAGATGATGCACCAGCTTTTTGAGATGTATCTGTCTCAATGAGTCATTTGATTTGCTCAGGGGTTCTGATTATTAGACTGCTTGTATATATATGCTCTGTTTATTTAATCTCTCAACTACTTGTACATGAAAAAAAAAAAAAAAA | |||||||||
gi|211896551|gb|CK445015.2|CK445015 GQ0073.TB_A01 GQ007: Secondary xylem of girdled saplings Picea glauca cDNA clone GQ0073_A01 CTTCCCATCCCATCCATTCTT EST sequence (targeted fragment marked with yellow): GGGTTCAATTTAACAAGATCAATGATGCCTATGAGACTGTAATGTCCAGTTTGGAAAAGGCTAAACATCAAAACTGTTCTGCCGATTACCATGTGGAGGACCTTATGGAAGTCGGGGACGATTCATGGGAAGAATGGATGGGATGGGAAGGAGCTGGAACCCTTGATTATTCCTCCCATATTAACATTTATGCCTGATAAGATCTTCATCATAAACTCTATATCCATGTCTTTTTTGCCTTGTAAACAGTTATTGCTTCTCCATGACCCATCCCCGTTTATGGGCTACCTATGAAACTCTTGCTTTTGACACTATAACCCTTAGAAAGCCCATATCTCTTGTACATATAATACATTCTTCTATTTGTATAGCTAATTTTATCTCTTACATTAGCTCCCACTGCACAAAGGACTTCTCGACCCAGTTGATGCAACAGCTTGTTGAGATCTTATTAAATCATTTGCTTTGCTCCTGAGTTTTGATTATTAGATTACTTGTACATATGCTCTGTTTAGTTCCATATCAATTACTAGTACACTTTTTGAGATCTCTTTGTCTCTGGACAATGTGAAGATTATGGGGATTTTCTCTTAAAATGAAGAGCTCCTAACTATATTTGTTGTAATTACAGTGTTACTCCATTTAGGAAACCATCATTTGAGTAAGAGATCTGGGTCA | |||||||||
gi|292515706|gb|GW737718.1|GW737718 WS04916.CR_N12 WS-CBM-34 Picea glauca cDNA clone WS04916_N12 3', mRNA sequence CTTCCCATCCCATCCATTCTT EST sequence (targeted fragment marked with yellow): GGGGAGGGTCTGACGGAGGACGATGACGATTCTTGGGAAGAATGGATGGGATGGGAAGGAGCTGGAACCCTTGATTATTCCTCTCACATAAACATTTATGCCTGATCAGATCTTCATCATAAACTGTATTTATGTCAGTTTGCTTGTAAACAGCAATGGCCTCTCCATGACCATCCCCATTCATGGGCTGCCTATAAAACCCTTTATTTTGTCACCATAACAACTGCCTTAGAAAGCCCATAGAACTTCTTCATTCACCTCTTGTAAATACAATATACTTTTCTACTTGGATAGCTGATTTTATTTCTCTTGTCTCGGCTCCCACAGCACAAAGGACTTCTTGACCCAGTTGATGCAACAGCTTTTTGAGGTCTTAATGAGTCATTTGCTTCGCTCATGGGTTTCGATTAATCTCTCAACTACTAGTGGATACCTTTGGGATCCTCTTTCTTTCACAATAATGTCAATGTTATGGGGATCTGCTCTTAAAAGAAAAGCTCTTCACTACTCTGGTTGTAATTGCAATGCTACTCAATTAATGTAAACCATTGTTTTGAGTAAAAAAGAAAAAAAAAAAAAAAA | |||||||||
gi|225912545|gb|GO367660.1|GO367660 GQ03719.SP6.r_I08 GQ037 - Shoot tip - Dormant Picea glauca cDNA clone GQ03719_I08 3', mRNA s CTTCCCATCCCATCCATTCTT EST sequence (targeted fragment marked with yellow): TTACAGGCCTCTTATCTTGTTTTTCCCTTGTGCTCTGATACCCATATCTGCAGCAATCCTTGTTATTTGTTTTGTTTTTTCTGGAGGTCAGTAACAGGATTTCGTTACACCCACTTGGGGATCTGGAGGGTTAGATCGATTTGCGAGCTGGGCTTCAAGCTCTTTTTGTAGGTCCGCGGATTATTTTTTGTTAGAGATCATGGCTGCCAAAGTTGGAAGGCTTGTGGGTGCTAACAGTCACTCGTTCTTAAGACGAAAGAATGCAGAGAAGAAGAATTTGGGAGGCAGGGGCAATGTAACTGTGATGGCCTCTGTTGCTTTCCCTGGGATGAAAGAGGAGTATGGGACTCTGAGATTGAACCCCGGGGCTACTGAGAAAGATGTGAAAAGAGCCTACCGTCGCCTTGCGTTGCAGTATCATCCAGATGTTTGCAGAGGAAATAACTGTGGGGTTCAATTTAACAAGATCAATGATGCCTATGAGACTGTAATGTCCAGTTTGGAAAAGGCTAAACATCAAAACTGTTCTGCCGATTACCATGTGGAGGAACTTATGGAAGTCGGGGACGATTCATGGGAAGAATGGATGGGATGGGAAGGAGCTGGAACCCTTGATTATTCCTCCCATATTAACATTTATGCCTGATAAGATCTTCATCATAAACTCTGTATCCATGTCTTTTTTGCCTTGTAAACAGTTATTGCTTTGCCTTGCAAAAAA | |||||||||
gi|211881862|gb|DV989191.2|DV989191 GQ02010.TB_C06 GQ020: Clean ROOTS systems -Diurnal cycle Picea glauca cDNA clone GQ02010_C06 CTTCCCATCCCATCCATTCTT EST sequence (targeted fragment marked with yellow): GATCATGGCCGCCGCTGTTGGAAGACATATGGGTACCCCGGGAGAATTCGTTCTTGAGAAGAAAAAATGGAGAGAAGAAGAATTTGGTAGGCAGGACCAATGTAACTGTGATGGCCTCTGTTGCTTTCCCTGGGATGAAAGAGGAGTATGAGACTCTGAAATTGAGCACTGGGGCTACTGAGAAAGATGTCAAGAGCTCTTTCCGTCGCCTTGCTTTGCAGCATCATCCCGATGTTTGCAAAGGAGAGAACTGTGGAGTTCAATTTCACAAGATCAATCAGGCTTATAAGACTGTAATGTCCAGTTTGGCACAAGCAAAGCAGCAAAATGGTTCCGACGATTACTATATGGATGGCATGATGGGAATCAATAACGATTATTGCGACGAGTGGGAAGATTGGATGGGATGGGAAGGAGCTGGAACCCTTGATTATTCCTCCCATATTAACATCTATGCATGATTAAACCTTTATCATAACTTGTATTCATGTCAGTTCGCCTTGTAAATAGTTAGGCCTCTCCATGACCATAATCATGTTAACCAGTTATGGTCTACCTCTGAAACTCTTACCCCTAATGCTTCTTCATTCATCTCCTGTAAATTTAACATACTCTTCTACTTGTATAGCAGATTTTATTTCTATTGCCTCAGCTTCTGCTTCACAAGGGGCTTCTTGATTCAGATGTGCAACAGCTTTTTGAGATGTCTCTATCCGGAGGACTCATTTGCTTTGCTCACCGGTTTTGATCTTGTACATATGCTCTTTTTATTTTAATCTCTCATCTACCTGTACATACCTTTGGATCTCTCTCGATCATGCCAATGTTATGAGGATCTGCTCTTCAATGAAGAGCTGAGTATTCATATTATAAGTCTTCAATGAAGAGCTGAGTATTCATATTGTAAGTCTTCAATGCTATTCAATTA | |||||||||
gi|211900347|gb|DV989510.2|DV989510 GQ0221.B7.1_K10 GQ022: ROOT XYLEM - mature trees Picea glauca cDNA clone GQ0221_K10 3', mRNA CTTCCCATCCCATCCATTCTT EST sequence (targeted fragment marked with yellow): GAAAGAAAGAGTGGAAAGAAGAAGAATTTTGGAGGCAGGAGGAATGCAACTGTGATGGCCTCTGTTGCTTTTCCTGGGATGAAAGAGGAGTATAAGACTCTGAGACTGAGCCCCGGGGCTGCTGAGAAAGATATCAAGAGAGCCTACCGTCGCCTTGCGTTGCAGTATCATCCCGATGTTTGCAAAGGAGATAACTGTGGGGTTCAGTTTCAGAAGATCAATCAGGCTTATGAGACTGTAATGTCCAGTTTGGCAAAGGCAAAGCAACAAAGCTGTTCTGCCGATTACTATGTGGAGGGTATGATGGGAGTCAGTAACGATTCTTGGGACGAGTGGGAAGAATGGATGGGATGGGAAGGAGCTGGAACCCTTGATTATTCCTCCCATATTAACATTTATGCCTGATTAAATCTTCATCATAAACTGTATGGGTGTCTGTTGGCTGGCCTTGTAAACAGTTATGGTCTCTTCATGACCAATACCATGTTGACTGGTATGAGCTACCTATGAAATTCTTGCTTTTGGCCGCGTAACAACGGCCTTAGAAAGCCCATAAGGCTTCTTCATTCATCTCCTGGAAATACAATGTGCTCTTCTACCTGTATAGCTGATTTTATTTCTCTAAGGTTGGCTCCCACAGCAAAAAGGACTTATTGATCCAGATGATGCAACAGCATTTTGAGATGTCTCTGTCTCAATGAGTCATTTGATTTGCTCAGGGGTTTTGATTATTAGACTGCTTGTATATATGGTCTGTTTATTTAATCTCTCAACTACTTGTACATACCTGTGGGATATCTCTCTGGACCATGTGAATACTATGGGGATCTGCTCTTAAATAAAGAGCTCCTAACTATTCTTGTGTAAAAAA | |||||||||
gi|225914545|gb|GO364906.1|GO364906 GQ03506.SP6.r_A01 GQ035 - Needles - End of season Picea glauca cDNA clone GQ03506_A01 3', mR CTTCCCATCCCATCCATTCTT EST sequence (targeted fragment marked with yellow): TCCTACCCCAACGCCCAGAACATCATCTGGTGCCAGGAGGAGCCGCTCAACGCCGGCGCCTGGAGCTTCACGCAGCCCCGCATCGAGACGCTGCTTAATCAGACTGAGCACCATAACCGCAGGCACGTCATGTACGCCGGTCGCAACCCGAGTGCGTCTGTGGCGACGGGTCTCAAGGCTGGTCATAAGAAGGAGGAGCAGGATTTGCTGGAGCAGGCTTTTACTGTTAAGCAGGATAAGCTTAAGGGCGAGTAAGCAAGCGTTTGCTGAGAGCGTGGTGTACTATTTCCCCTCCATCCTGTTTCCGAGTTCCTTTTGATGATTTGCATTGGCGCTGTCGCCTTATTCCCCCGTCCGTTGTCGTCGTTCAGTGCGGTGCGAGCGAGCAGGTCATGGGGTCTGTTTGAGACTGGGTTGTATATTTGCATGGGCTAGAGTGTGTATGTATAGGATGGATGGGATGGGATGGGATGGGTGTTTCTACTAGAGTTAGTTGTTTGCGTATAAAAGTTGCGATTCGTAAAAAA | |||||||||