| mature miRNA: CTTCCTTCTTCTTCTTGCAAG species: Solanum tuberosum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|160520249|gb|AM907381.1|AM907381 AM907381 Solanum tuberosum cv. Yungay leaf adult Solanum tuberosum cDNA clone 10L21, mRNA se CTTCCTTCTTCTTCTTGCAAG EST sequence (targeted fragment marked with yellow): CTTGATATCGAATTCCATCAGGCAGAGGACGAGACAGAACGCAGGAAAAAAACGTCAAGAAGTTAAAAAGGTTGCTCTCTACGTCAGCACTCAAAACCGAGGATAAGGAACAAGAAGAGGAACATAATGAGGATCCCCATATCAAGAAAACTTCCAGCAGTGTAAATTTGCAACAAGAACAAGGAAATTTAGAAGCCAAAATCCAAGATGAGAATCTCAAAAAGGCCAAGGCATTTAAGGACACAATATTTGAGATAAATGAATCGCCAAAATCAGAGCTCCATATACCAAAACAAGTATCTCATCATCGGAGAGCATCCTCGTTTGCCTTCTCAGATGATAGAGGAACACTAAAAACAAATGACTTGAGCATGTCTTTGAGCAAATCTTCGTCATCACTCAACACCAAGGATAAGGAACAAGAAGAGGAACTCCAAGTTCCGAAAAATCTCAAGTTGCAACAAGAACAAGAAGATTTGAAAGAGAAAATCCAAGATAAGGATCCTGAAAAGGCTGAGACACTTGAGAGGTCAATAATTGAATCACCAAAACCTGAGGCAGATCCCCATACACCAAAAAGGTTCCTCTTCATTGGATATCATCCTCGTCTTCCTCCTCAGATGATGGAGGATCACTAAAACAGAAGACTCTGTTAGTGATAGAAGTCTTATCAGGAGGAAAAGAACGTTGTTTCGAAAAGTTGGTGATCTCATAAGGAGGAAAAGTTTTCA | |||||||||
gi|115272459|gb|EG010695.1|EG010695 SSBT002L10x SSBT Solanum tuberosum cDNA clone SSBT002L10, mRNA sequence CTTCCTTCTTCTTCTTGCAAG EST sequence (targeted fragment marked with yellow): GGGGGCTGCATTATTCACCATTACGAAACCCTAGTAGCAGTCCCAAATCTACCATTGAAGAAGTTTCTCGTAGCTTCCAATTCTCCTCAAAGAAGAAGAAGAAATGAAGGTTATTGCTGCTTATTTGTTGGCTGTTTTGGGTGGTAACGCATCACCTTCAGCAAAAGACTTGAAGAATATCCTCGGTTGTGTTGGTGCTGAGGCTGATGATGACAGAATTCAACTGCTCTTGTCTCAAGTTGATGGCAAAGATATCACAGAGCTGATTGCTGCTGGCAGAGAAAAGTTGGCTTCAGTACCTTCTGGTGGTGGTGCTGTTGCAGTTGCTGCCCCTGCCGGTGGAGCTGCTGCAGCCCCTGCTGAGGAGAAGAAGGAAGAAAAGAAGGAGGAGAAAGAGGCATCAGAAGATGAGGATATGGGCTTCAGTCTATTTGATTAGAAGAAAACAATCTTGTTCTCTACGCATCCCTTGAGCTTACTTTAGGAAGTTTTTTTAGGTCTAGTAATGGATTTTGCTATTAGTCATCTAGTTGACAAACCTTGATTTTACATTTGG | |||||||||
gi|78747788|gb|DV624191.1|DV624191 93694.1 Cold Sweetening C Solanum tuberosum cDNA clone 93694 5', mRNA sequence CTTCCTTCTTCTTCTTGCAAG EST sequence (targeted fragment marked with yellow): ACTAAATATCTTTGATCTCTGCGCATACAAGGAGGAGAAGACTTGGTAAATTTTTTTGGGCCGACTTAGGTTTGACATCCGCCACCACCACTCGTTGCTTGCAGGAGAAGGAGGAGGAGGCTGAAAAATCATTATCCGTCGACTTCTCTTCATCGATCCTTGTAGTAATCGATCGTTGATCTGTGTAACAATTTCAGTTTTTTTTTAATTGAGTTTTATGTCATTGGTGGCGTTAGTTTCTTGAGCTTTTATTGTTGATTAGGAGATCAGTTGAGAGCTGCTCTTGGATGCATTTTTTGAGCTGTTGTGATTAGTTCATCACTGTGGAGTTTATATTGTTAATAAGGGCGCTAGTTTCTTTAGCTTTTATTGCCGATTAAGAGATCAATTGAGAACTGCTCTTGGATGCATTTTTGGGCGTGGTATGTTATGAAAAGTTCATCACTGGTTTATCAACTTTTATCAATGGCATGGATGTGGTCTCTCTGAGGCGAAACTGAGGCCGGTTTGTATATAACTGTTATCTTTGAACCTTTGGCTTTAAACCAGTGGATAGGGATTGATCCTGTAGGTAAAAATGGAAACAAAATTCGAAAAGGTATTGGATAGAAGCCGGAACATTGTTGTTGACTTGAA | |||||||||
gi|280982882|gb|GT888621.1|GT888621 A70F09-500 Potato tubers 24 h infected with Fusarium eumartii Solanum tuberosum cDNA clone A CTTCCTTCTTCTTCTTGCAAG EST sequence (targeted fragment marked with yellow): CTCGTGCCGCTTCAGTAGCCGTCCCTTGCAGGTTGAAGGAGGAGGAAGATGTCTCACAGGAAGTTTGAGCACCCAAGACACGGTTCTTTGGGATTTCTCCCCAGGAAGCGTGCTGCCAGACACAGGGGAAAGGTGAAGGCATTCCCAAAGGATGACCCAAGCAAGCCTTGCAAGCTAACTGCCTTCTTGGGGTACAAGGCTGGAATGACTCACATTGTCAGAGAAGTTGAAAAGCCTGGATCAAAACTCCACAAGAAAGAGACATGTGAAGCTGTTACCATTGTTGAAACACCTCCTATGGTGATCGTTGGTGTTGTCGGGTATGTGAAGACCCCTCGTGGTCTTCGTTGCCTGAACACAGTCTGGGCTCAACATCTCAGTGAAGATATTAAGAGGAGGTTCTACAAGAACTGGTGCAAATCCAAGAAGAAGGCCTTCCTAAAATACTCCAAGAAATATGAAACTGATGAAGGGAAAAAGGATATCCAGGCACAGCTGGAGAAATTGAAGAAGTATGCTTGTGTCATCCGTGTGTTGGCTCACACTCAGATAAGGAAGATGAAGGGTCTGAAGCAGAAGAAAGCCCATTTGATGGAGATCCAGGTGAATGGTGGATCAATTGCTCAGAAGGTTGACTTCGCATATGGTTTCTTTGAGAAGCAGGTTCCAGTTGATGCTGTTTTCCAGAAGGATGAGATGATTGACATCATTGGTGTCACCAAGGGTAAGGGTTATGAAGGTGTTGTTACTCGTTGGGGGTGTGACACGTCTTCCTCGCAAAACCCACAGGGGTCTACGTAAGGTTGCTTGTATCGGTGCCTGGCATCCTGCTAGAGTTTCATTCACAGTGGCTCGTGCTGTCAAAATGGATACCATCACCGTACTGAGATGAACAGAAGGTTACAACTTGGCAAGTTGGACAC | |||||||||