| mature miRNA: CTTCGTTTTCTGTTCGACCTT species: Raphanus raphanistrum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|158655971|gb|EX765862.1|EX765862 RR3CW36TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence CTTCGTTTTCTGTTCGACCTT EST sequence (targeted fragment marked with yellow): GAAGAAAAGGCGGAGGATAGGAACAGTGCTCTTGATAAACTTTCGGATATCATTGCTATGACGAATGAAGATCTGAACAAGGTTCAGTACAGTTACAACAAGACGGCCATGTCACTGCAGAGGGTGTTAGACGAGAAGAAAACCTTGCACGAGGCTTATGCTAACGAAACGAAGAAGATGCAGCAGATGTCGATTCTCAGTATCCAGAAGATCCTTAACGATAAAGAGAGGCTAAGCAATGAACTGGAGAAGAAGATGCAGAAACTATCGGAGTGGTCCAAAGCGTTGGACAAAAAAGAAGCACTAACTGAACTGGAGAGGCAAAAGCTTGATGAAGAGAAAAAAAAGAATGATGCTATGAACATCTCCCTCCAGTTAGCCTCCCATGAGCAGAAAAAGGCTGACGAGAGCGTTTTGAGACTAGTCGAAGAGCATAAGAGGCAAAGAGAAGAGGCCTTGAGCAAGATCCTTCTGCTTGAGACTCAGCTGGACACCAAACAGACACTTGAAATGGAGATTCAAGAGCTGAAAGGCAAACTACAAGTGATGAAGCATTTGGGGGATGATGATGACGAGGCGGTCAAGCAGAAAATGAAGGAGATGAATGATGAGCTGGAGGATAAGAAGTCTGAGTTAGAAAGGGCTGGAGCAGATGAACTCAGCCCTGATGACAAAAGAACGTCAAAGCAATGATGAGATACAAGCAGCACGGAAGAAACTCATTGCGGGTCTGACGGATTGTTGGGTGCCGAAACTGATATTGGGGTCA | |||||||||
gi|154181543|gb|EV550883.1|EV550883 RR3B056TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence CTTCGTTTTCTGTTCGACCTT EST sequence (targeted fragment marked with yellow): GGAATCAACCATTTGTTATTGTTGAGTGTTTGTTTATCTCGCTCACCTAAATTTGCAACGAAAAAAAGATTTTCTGATCAATATTGAACAGAAAACTAAGAAACCCATTTTTTTTCTTCTTCGAAGGATCTGAATATTTTATTTTCTGAAATTTCGTTGAAGAAACTTTGAGATTAGAGGAACAAATTTCAATTGATCTGCACGTTTCTGATTTGAGAAGAAAAAAAGGAACAACAATGAGCTCTGAGCAAAACAACAGCACAAGCTTCCCACCAACTGAGCCAAAGCTCTGCGACAACGGATGCGGTTTCTTCGGGTCACCTTCCAACATGAACCTCTGTTCCAAATGTTACAGAAGTCTCCGAGCCGAGGAAGATCAAACCGCTGTAGCAAAAGCTGCTGTCAAGAACTCACTTAAGCTTCCATCTTGCAGTCTCATTATCACACCAGAGCAAAAGCAGCCTCTTGAAACCAAACCAGTCTCTGTTGTTTTAACGACTGAGCCGTCGTCTTCAGTTCCTGTAGCCACGGGACAGGAGGAGGTAGAGCCGTCGAAACCTGCACGGACGAATAGGTGTTTCAACTGTAACAAGAAGGTTGGGGTTATGGGGTTTAAGTGCAAATGCGGCAGCACGTTTTGCGGGAGCCATAGGTACCCGGAGAAGCACGAGTGTAGCTTCGATTTCAAAGAAGTTGGACGTGATGCAATCTCAAAGGCTAATCCTGTGAT | |||||||||
gi|167486667|gb|FD971967.1|FD971967 RR2GK52TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence CTTCGTTTTCTGTTCGACCTT EST sequence (targeted fragment marked with yellow): GATTTGGGGGATGATGATGACGAGGCGGTCAAGCAGAAAATGAAGGAGATGAACGATGAGCTGGAGGATAAGAAGTCTGAGTTAGAAGGGCTGGAGCAGATGAACTCAGCCCTGATGACAAAAGAACGTCAAAGCAATGATGAGGTACAAGCAGCACGGAAGAAACTCATTGCGGGTCAGACGGGATTGTTGGGTGCCGAAACTGATATCGGTGTCAAGAGGATGGGTGAACTTGATGAGAAGCCCTTCCTGAATGTTTGCAAGAAGAGATTTTCGGAAGATGAAGCTACGGTTGAAGCTGCCACCCTTTGCTCTACATGGCAAGAGAACCTCAAGGACTCCTCGTGGCAACCGTTCAAACGTGAAGGAACCGGGGACAAAGCAAAGGAAGTGGTAGACGAAGATGATGAGCAGCTGAAGAAGCTTAGAGGAGAGTGGGGAGAAGAGGTGCATAACGCTGTTAAAACAGCTCTCGAGGAGATGAATGAGTACAATGCAAGTGGTCGATACACCACCCCAGAACTTTGGAACTTCAAAGAAGGTAGGAAAGCAACACTGAAGGAAGTGATTAACTTCATTTCGAACGACCAAAACTGTGAAACGCAAAAGAACCTGAAGGATGCGGGAGGAAGTAGAAGGAATGGTTAAGCTTTTATGTGTATTTAATAACTGAGATTGAGAGCTTTAATGATGTAAAATAATGGAGTTACTTATATACTCTCGGTATCCCCAGACTTAGCTCTTCAGCTTGTGTCTTTGATATTTGTCTTTGGAGATTCGACAGCCAATAGCTAGTGTGTCTGTATATGC | |||||||||
gi|167490900|gb|FD973905.1|FD973905 RR2H706TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence CTTCGTTTTCTGTTCGACCTT EST sequence (targeted fragment marked with yellow): GATTTGGGGGATGATGATGACGAGGCGGTCAAGCAGAAAATGAAGGAGATGAACGATGAGCTGGAGGATAAGAAGTCTGAGTTAGAAGGGCTGGAGCAGATGAACTCAGCCCTGATGACAAAAGAACGTCAAAGCAATGATGAGGTACAAGCAGCACGGAAGAAACTCATTGCGGGTCAGACGGGATTGTTGGGTGCCGAAACTGATATCGGTGTCAAGAGGATGGGTGAACTTGATGAGAAGCCCTTCCTGAATGTTTGCAAGAAGAGATTTTCGGAAGATGAAGCTACGGTTGAAGCTGCCACCCTTTGCTCTACATGGCAAGAGAACCTCAAGGACTCCTCGTGGCAACCGTTCAAACGTGAAGGAACCGGGGACAAAGCAAAGGAAGTGGTAGACGAAGATGATGAGCAGCTGAAGAAGCTTAGAGGAGAGTGGGGAGAAGAGGTGCATAACGCTGTTAAAACAGCTCTCGAGGAGATGAATGAGTACAATGCAAGTGGTCGATACACCACCCCAGAACTTTGGAACTTCAAAGAAGGTAGGAAAGCAACACTGAAGGAAGTGATTAACTTCATTTCGAACGACCAAAACTGTGAAACGCAAAAGAACCTGAAAGATGCGGGAGGAAGTAGAAAGAATGGTAAGCTTTTATGTGTATTTAATAACTGAGATTGAGAGCTTTAAATGATGTAAAATAATGGAGTACTATATACTCTCGGTATC | |||||||||
gi|167474403|gb|FD958905.1|FD958905 RR1G204JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence CTTCGTTTTCTGTTCGACCTT EST sequence (targeted fragment marked with yellow): TTAAAAAAGTTTAAGCGCGGCGCGGCGGCGGCGGAGCCATGGTTCTCAAGACTGAGCTTTGCCGATTCAGTGGTCAGAAGATTTACCCAGGCAGGGGGATCAGATTCATCAGATCCGACTCTCAGGTTTTTTTGTTCATTAACTCGAAATGTAAGCATTACTTTCACAATAAATTGAAACCGTCCAAGCTTGCATGGACCGCCATGTACCGTAAACAGCACAAAAAGGATGCTGCTCAAGAGGCTGTGAAAAAGAGGAGACGTGCAACAAAGAAGCCGTACTCTAGGTCTATTGTTGGCGCTACTTTGGAGGTCATTCAAAAGAAGAGAGCAGAGAAGCCTGAAGTTCGTGATGCAGCCAGAGAAGCTGCCCTACGTGACATTAAGGAGAGAATCAAGAAGACCAAGGACGAGAAGAAGGCGAAGAAGGCTGAGTTTGCTTCCAAGCAACAGAAGTCTCAAGTGAAGGGTAATATTCCCAAGAGTGCTGCACCCAAGGCTGCTAAGTTGGGTGGTGGTGGTGGCAGACGCTGAATTGCTCATCCCTCTTCTTAATTGTTTCGACCTCACAAGATTTTGAAGACCGTTTTGCACCTATCTAATATACTTTTGACTCGGAGGTTTCTTTTTCGCCGATAAAATTTGGGAACTTGGCTGCAGTTCATGGCTTGTCTATGGTTTTAATGTTCTCCAGTAACAACAATCTATTGTCTATGAATCGGAAGCATCCATTTTCATTGTAATCTATAAACTTTGTTTATCAGATATTTGAGATTAAGTTGTAAAAAAAAAAAAAAAAAAA | |||||||||
gi|158650696|gb|EX760587.1|EX760587 RR2CH59JQ RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence CTTCGTTTTCTGTTCGACCTT EST sequence (targeted fragment marked with yellow): AAAATACATATATAAATCAATATATTCATATACATACGGATTTTATTTATTTTGCATAAAGTTGTATAGAAGCATGCAAGCGAATTTCGATATGAAGAAACAATTGTTAAAATATGGAAACATTCGTTTAAAAGCATTTAGGTTAGTCCGGTTAGAGGGAGAATGTTTTACCCATTGAGTATGATATACATATTATGTACATGGGTACAAATCAACATAGACATGTATATAGAACTTATTGACGTGAAAGAAGTCTGTATAGCTCAGCATGCTTGTTGCATCTGCACATACGCAAGACCATGAGTATTGTTAATATTGATATACTGACATACTTATTTTCAAAAAAAAAGATATACTGTAATATCACTAATTTTTCATATACAACAATTAAGAGTCGTTACGTCCTAAGGAGTCGAAAGAACTAGCCTTGTTATTAAGAGTCGTTACTTCCTAAGGAGTCAAAATTTGCATTTGGTTTTTAATTTGCCGTCATAGAGCTTAATATGTGATTTAAAAACCTTTTTTAACGTGATGGTAAAAGCCAAAACCAAGGTCGAACAGAAAACGAAGATAAGATGGAATCAGATCGAGATTACTCCGTTGACAAGTGTTTGCGCACTGAATCCAACCACTTAGCTGTGCTTATACATACATTTTATGTGTATCTATATATATAATATTTATAAGTGCATGATTCTGACGTAGTGGAATAATTAAGCAATTTTGTAAGATGTAATTATGTAAATCGAGGCACGTTATTGT | |||||||||
gi|166124490|gb|FD559391.1|FD559391 RR4FI90TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence CTTCGTTTTCTGTTCGACCTT EST sequence (targeted fragment marked with yellow): GGAATCAACCATTTGTTATTGTTGAGTGTTTGTTTATCTCGCTCACCTAAATTTGCAACGAAAAAAAGATTTTCTGATCAATATTGAACAGAAAACTAAGAAACCCATTTTTTTTTCTTCTTCGAAAGATCTGAATATTTTATTTTCTGAAATTTCGTTGAAGAAACTTTGAGATTAGAGGAACAAATTTCAATCGATCTGCACGTTTCTGATTTGAGAAGAAAAAAAGGAACAACAATGAGCTCTGAGCAAAACAACAGCACAAGCTTCCCACCAACTGAGCCAAAGCTCTGCGACAACGGATGCGGTTTCTTCGGGTCACCGTCCAACATGAACCTCTGTTCCAAATGTTACAGAAGTCTCCGAGCCGAGGAAGATCAAACCGCTGTAGCAAAAGCTGCTGTCAAGAACTCACTTAAGCTTCCATCTTGCAGTCTCATTATCACACCAGAGCAAAAGCAGCCTCTTGAAACCAAACCAGTCTCTGTTGTTTTAACGACTTAGCCGTCGTCTTCAGTTCCTGTAGCCACGGGACAGGAGGAGGTAGAGCCGTCGAAACCTGCACGGACGAATAAGTGTTTCAACTGTAACAAGAAAGTTGGGGTTATGGGGTTTAAGTGCAAATGCGGCAGCACGTTTTGCGGGAG | |||||||||
gi|161542362|gb|EY914635.1|EY914635 RR3DK79TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence CTTCGTTTTCTGTTCGACCTT EST sequence (targeted fragment marked with yellow): GGATCAACCATTTTATTTGCTGCTCAACGAAATCGAAAGAAGGTTTTAAGGCCGGAGGAGTTGGGGGTAGTGGTCTGGATCTGCCGGCGAACAACAAGCACCGTCACATTAGTCCTCTTTTCATTTCGTTGGAAATCAAGACAGGTAATTCTTGTGGAAGATGGAAGCCAAGTTCTTTAGGTTCTTGAAGATTGTTGGAGTTGGATACAAAGCCAGAGCTGAGGAAGCTGGCCGTTTCTTATACCTCAAGCTGGGTTACAGTCACGAAGTCGAACTCGCGGTTCCTCCGGCTGTTCGTGTCTTCTGTTTCAAGAACAATGTGGTTTGCTGCACTGGGATTGACAAGGACAGGGTGCATCAGTTTGCTGCCACAGTCAGGAGTTGCAAATCTCCTGAAGTTTACAAGGGAAAAGGCATCATGTACATCGACGAAGTCGTCAAGAAGAAGGTCGGAAAGAAATCGAAATAATCTTTCTTCTTTCTCTATGCTTCTTTTGCATTTTGGTTTGCGGAGAACTTGGGTGATAGACTTGGGATTTGCTTGTTATGATAAGTTTTTTACTCTGATGTATGAAACATCATTTTGAGGTTAAGTCAGTTTTTATCAAACAAGAAAA | |||||||||