mature miRNA: CTTCTTCCTCTTCCTCTTCAT species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|57819005|gb|CX620218.1|CX620218 GABR1_50_C01.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_5 CTTCTTCCTCTTCCTCTTCAT EST sequence (targeted fragment marked with yellow): ACGCCCACGCCACGCCACGGCGCGCGGCGCGGCGCGGCGCGCTACTACCCACAATGGCGCTCACCTCCGCCACCACCGCCGCCGCCACGGTCTCCTCTCCCTCCCGAATCATCCGCCGCTTCGCTTCTTCTCCAGACTCTCGCGCCCCTTCCTCGCTCCTCCGTCTCGCCCCGCGCCGAGGAGCCGAGAATTCCCCGCGCGCCTGTAGCTGGCACCGGCTCGTGGTGGTGCGCCGGATGGACGGCAGGGCGCGAGCGCTCCTCGGCGGACTCTCGGACGCCGGAGGCAGTGAGAGCGACGAGGAAGAGGAGGAGGAGGAGCACGCCCTGCGAGGGGGCCAGCGGGAGGGCGAGGTCGACGACGCCGTGGCGCTCTCCGCGGCGGCCGTCGGGCCAGAGAGATGGGACGTGCTGGGCCTCGGCCAGGCGATGGTTGACTTCTCAGGGATGGTGGATGACGAGTTCCTTCAGAGATTGAGCATAGAGAAGGGCACGAGAAAGGTCATAAACCATGAGGAGAGGGGACGGGTCTTGCGTGCCATGGATGGGTGCAGCTACAAGGCTGCAGCTGGAGGCTCCCTGTCCAACTCGCTCGTGGCGCTGGCAAGGCTTGGTAGTAGCCAGTCTGCTGGCTACCCTGAGCTTAAAATTGCTATGGCCGGTAGTGTGGGCAGTGACCCACTAGGTAGTT | |||||||||
gi|31329781|gb|CD423518.1|CD423518 SA1_23_F07.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor cDNA clone SA1_23_F07_A00 CTTCTTCCTCTTCCTCTTCAT EST sequence (targeted fragment marked with yellow): AGCCGAAGGCGAAAGGCAAGGCAGACAATCGCGAAGCGAAGCCACGCCACGAGGGGAGAGGGGGGAGGATGGGGCGGAAGAGGAAGGAGCTGCTGTCGTCGGCGCCGTGGCGGACGGGGGAGGCGGCGGAGGACGAGGACGCGGCGAGGATGAGCCGCGAGGGGAAGGTCAGCGTCACCAGCAACCCTGGCGAGACGGCCACCATGAGCGTGCCCCGGAGCAGGCGCCAGGAACTCGACCTCACCGTCGACGACTTCGAGGAGGACGAGATCGACCCCGAGCTGCGCTACTCCTTCCAGCGCAACAGCAGGTTTCTGAAGAGAGTTTTTAGTGTGGACACACTTGTCAAGCCTCTCCCTCCTGTGATGGCATACAGCGTATCCCGTAATATAAACTTTTTCTTCCGGATCTTCACACAGTTCTGGGATGAAGAAGGAATCGCCAATGCACAGAAGTCCCTTGGACTGGGGAATGATGATGGCTCCCGCCGAATGCCCTGATTGTGGTCAAACCAAGTTTC | |||||||||
gi|57809137|gb|CX610417.1|CX610417 ANR1_18_C11.g1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_18_C11_A002 5', mRNA sequ CTTCTTCCTCTTCCTCTTCAT EST sequence (targeted fragment marked with yellow): GAGAGAGAGAGAGAGGCGGAGGCTTCCGCTATCCGTGGCCAAAAGATCGATCGAGTAGCCAGCAAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAGAGATGAACGCCGACTTCGGCGCACCCAAGGAGCTCGCGGGGGGGCTGCAGCATCGACGGGCCCTCTACCAGCCTCCCCTCCCGCCATGCCTGCAGGGGCCGACGGTGAGGGCCGAGTACGGCGACGCGACCACCACCATCGACCCCACCTGTGCCCAAGCCGTCGCGCAGGCCTTCCCGCACACCTTCGGCCAGCCGCTCGTCAGCTTTGTCGCGCCGTCCGCCGACGCCGCAGCTGCTGAGGAGCGCCACCCGATCAGGGTGGGCGTGGTGTTCTCTGGGAGGCAGTCGCCGGGAGGGCACAACGTCGTCTGGGGCCTCCATGACGCACTCAAAGCCTACAATCCTCAGAGCGTGCTCTACGGATTTGTCGGTGGCACGGAGGGACTGTTTGCAAACAAGACGTTGGTGCTCACAGACGATGTTCTTGCTTCCTATAAGAACCAAGGTGGCTTCGATTTGCTCGGTAGGAGTATCGATCAGATCCGCACTACTAAGCAAGTGAATGCTGCAATGACAACATGCCGCAGTCTGAACTTGGATGGGTTGGTCATCATTGGAGGAGTGACCTCCGATTCAGATGCTGCACAGCTTGCAGAGACCCTTATACAGAATAACTGTAAGACCAAGGTCGTTGGTGTGCCAGTTTCATT | |||||||||
gi|45960424|gb|CN131218.1|CN131218 RHOH1_46_D01.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_46_D01 CTTCTTCCTCTTCCTCTTCAT EST sequence (targeted fragment marked with yellow): GCGCGCAGAGGAGAGAGAAGCACACCACGCCGCGCACGCACCAGCAGCCACGACCACGACTCCACGAGGAGGGAGGAGGAAGGACACCGTCGCCTCCTGTCCTGGTTGGTTCGTCTCGTCAGTCCACAGTCGTCACCGCCTCCCGCAGCCAACCGGCGGGCATTCCTGTCCTGGATGCGACAAGGCCAAGGTAGCGGAAAGCCCTCCGGCTCTTTTCAAGGGTCGTAGGCCGCGCACGCCCTGCAGCAGCAGCAGCTGCTGCCGCCGCCTCGGGGCGCGTGTCGAGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAACAAGGATCGCCTTCTTCTTCTTAACCACCACCACCGCCGCCGCCGCCACCAAGTGCTCAGTAGCAGAGCAAGGAGGGGGATCAGCGTCGCGAGATTCGGCACTCAGGAGGTAAATGTGCGTTAGGAGCTACAGCAGCAATGGCATCGCTGGTACCCGGGGTCCTCCTGAAGCTGCTCCAGCACATGAACAGCGACGTCAAGGTGGGCGGCGAGCACCGGTCGTCCCTGCTCCAGGTCGTCAGCATCGTCCCAGCCCTCGCGGGGAGCGACCTCTTCACCAACCAGGGGTTCTACCTCAAGGTGTCTGACTCGTCGCACGCGACCTACGTGTCCCTG | |||||||||
gi|34446306|gb|CF433605.1|CF433605 NIT1_28_E04.b1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA clone NIT1_28_E04_A002 CTTCTTCCTCTTCCTCTTCAT EST sequence (targeted fragment marked with yellow): GGGCCCCCGGAAAATAGGTTTATTAACAATTAAGCTTCCTTTTAACAACAGTCAAACCAGCTAATGAGACGATGAAGACAGCATATATGACCGTAGTAATAGTAATTATAATTACTGGTTACTATAGCAGTATTAATCAACCCTACCGAAGAAAGAAGAAGAAGAAGAAGAAGAAAAAGCCAAAGGGAAAAAAAAACGAAATTACCCTCCTTTACATCCGCATCACTACAGACAGCAGTAACACCAGCAGGGAGCAGCGGACAGAGAGAGTTATTACCAGCAGGGACCAGCAAAGCCAGCCATGGGGCATGGGCGGGCGGGCATGTCGACCGCCAACCAGCCAGCCAGCCAAGATTTCTGCCTCCTTCCTTG | |||||||||
gi|30164949|gb|CB928678.1|CB928678 ABA1_17_D08.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor cDNA clone ABA1_17_D08_A0 CTTCTTCCTCTTCCTCTTCAT EST sequence (targeted fragment marked with yellow): ACCCCATCCTCTCCCTCCTCTTCGCCTCTCTCTCTCTGCACGCCTCCACTCCGCGTGGTCTTACGTTCGGCGGTGGTTAACCTCGCAGAGAGGCAGCAGACGACCGCAGCAGCGCCAGAAGCTAGCCATGACCGCGGCCGTCGACGGGGAGGCCTGCGCGGTGGTCGCGACGGCCGCCGACATCATCTGCTCTCTCCGTGGCGCGGACCTCGCCGGCTGGACCCCGCCGTGGCGTAAGCACGAGCCCGCCGCCTGCGACGGCGGACAGGAGAAGAGCGGTTGCGGCGGCGGCGCCGCCGGCGACGACGACGAGCGCGACCTGTCCTGGCCGGCGGTGGCGCGCGGGAAGCGCTCGCGGTCGTCCCGGCGCGAGTCCCCGTCAGCCTCGGCCTCCGCCGCCTCCGCGGACGCGAAGAAGGAGAAGAAGAAGAAGAAGAAGGCGAGGCGCGGCGCCCGCGGCAGCCCCGCGTCGCCCATGGACTACAGCGGCGGGTCTGGGTCCGGGTCCGGCGCGTCCACCAGCGGCGGCGAG | |||||||||
gi|7535595|gb|AW671700.1|AW671700 LG1_349_B02.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence CTTCTTCCTCTTCCTCTTCAT EST sequence (targeted fragment marked with yellow): GCACGAGGGTGCAACCTAGGCGAGAGCCCTCCTCCGCTCCTTCCAGCTCGCTCTCTAGTCTGCACCAGCCTCGTCGCCCGCCGCCGGCGCCGCTATGGGGAGGGGAAAGTTCAAGGGAAAGCCCACCGGCCGCCGCAACTTTTCCACGCCCGAGGAGATCGCTGCTGGTACTTCAGGCCGCCCACGCACCTTTAAGAAGAAGGAGGAAGAGGAAGAGGAGGAACATGAAGAAAGAGAAGAATCCGAGGAGGAAGAATCTGAAGACGAGTCTGACGACAAACCTAAACATAAAGGTACTGAGGGTATTATTCAGATTGAAAATCCAAACTTAGTGAAAGCCAAGAATATAAAGGCCAAGGAAGTTGATCTTGGGAAGACAACTGAACTCTCAAGGCGTGAAAGAGAGGAGCTTGAGAAACAAAAAGCTCACGAACGTTATATGAAGCTTCAAGAGCAAGGAAAAACAGAACAAGCACGGAAAGATTTGGAACGTCTTGCTTTAATAAGACAGCAAAGGGCTGATGCTGCAAAGAAA | |||||||||
gi|9852417|gb|BE597344.1|BE597344 PI1_72_C09.g1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence CTTCTTCCTCTTCCTCTTCAT EST sequence (targeted fragment marked with yellow): GGCCGGTGGTGGGGAAGAGGCAGAAGGAGACCATACGGAAGCCGAATGATTTCAAGCAGCCTGGGGAGAGGTACCGGAGCTGGGACGCCGATCGGCAGGAGAGGTTTGTGCGGCGGTTTGCTGACTCGCTGGGGCATCCAAAGGTTAGCCAGGAGCTCAGGTCCATCTGGATCGACCTCCTCTCAAAGTGCGACGCATCGCTGGGGATGAAGATTGCCACACGGCTCAACATGAAGCCAAACATGTGAGTGATATGATGGCGAGGATGGAGCTGCAGCTGGCTGCTACTGCTACTGCTAGTAGTGAACGAAGTGAATATGAATAAGAGTGTGGTTGAGTGAGGCGTGTCCGAGTTGTTCTTCAGTACTAATCGTCCACCGCCGTTCGTCTTTCGTCCTTTCCTTACCTTGTCATTGTCGTCAAGTCAAGAATCAAGAAATAAGAAGAGCAGCATGAGCATGAGACATACGTATACATGTCAAGAGCTAGTAGACTACGACAAAACTGCACATGCGCATCAGATGGATGCATATCCTCAGCCCAAACTATAGTCCGTGTACGCGTGTCCGGATTTGTCTGTAACAATGCAAGCCAAGCGAAATGGCTATCTGTTTTCGTTATCATTACATGCATGTACCTTGCTACCTGAACCTGAATATGTTGCGAGT | |||||||||
gi|34440462|gb|CF427761.1|CF427761 PH1_10_G08.g1_A002 Phosphorous-deficient seedlings Sorghum bicolor cDNA clone PH1_10_G08_A002 CTTCTTCCTCTTCCTCTTCAT EST sequence (targeted fragment marked with yellow): TTCTTCTTGCTGGCGACNCGATCGATCGAGTAGCCAGCAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGATGAACGCCGACTTCGGCGCACCCAAGGAGCTCGCGGGGGGGCTGCAGCATCGACGGGCCCTCTACCAGCCTCCCCTCCCGCCATGCCTGCAGGGGCCGACGGTGAGGGCCGAGTACGGCGACGCGACCACCACCATCGACCCCACCTGTGCCCAAGCCGTCGCGCAGGCCTTCCCGCACACCTTCGGCCAGCCGCTCGTCAGCTTTGTCGCGCCGTCCGCCGACGCCGCAGCTGCTGAGGAGCGCCACCCGATCAGGGTGGGCGTGGTGTTCTCTGGGAGGCAGTCGCCGGGAGGGCACAACGTCGTCTGGGGCCTCCATGACGCACTCAAAGCCTACAATCCTCAGAGCGTGCTCTACGGATTTGTCGGTGGCACGGAGGGACTGTTTGCAAACAAGACGTTGGTGCTCACAGACGATGTTCTTGCTTCCTATAAGAACCAAGGTGGCTTCGATTTGCTCGGTAGGAGTATCGATCAGATCCGCACTACTAAGCAAGTGAATGCTGCAATGACAACATGCCGCAGTCTGAACTTGGATGGGTTGGTCATCATTGGAGGAGTGACCTCCAATTCAGATGCTGCACAGCTTGCAGAGACCCTTATACAGAATAACT | |||||||||
gi|13318010|gb|BG412457.1|BG412457 OV2_34_D11.g1_A002 Ovary 2 (OV2) Sorghum bicolor cDNA, mRNA sequence CTTCTTCCTCTTCCTCTTCAT EST sequence (targeted fragment marked with yellow): CGTCCAGGCACGCGCCGATCCGGCAGGCGCAGCCGGTGCCGATCCCGGCGAGGCCGGTGGTGGGGAAGAGGCAGAAGGAGCCCATACGGAAGCCGAATGATTTCAAGCAGCCTGGGGAGAGGTACCGGAGCTGGGACGCCGATCGGCAGGAGAGGTTTGTGCGACGGTTTGCTGACTCGCTGGGGCATCCAAAGGTTAGCCAGGAGCTCAGGTCCATCTGGATCGACCTCCTCTCAAAGTGCGACGCATCGCTGGGGATGAAGATTGCCACACGGCTCAACATGAAGCCAAACATGTGAGTGATATGATGGCGAGGATGGAGCTGCAGCTGGCTGTTACTGCTACTGCTAGTAGTGAACGAAGTGAATATGAATAAGAGTGTGGTTGAGTGAGGCGTGTCCGAGTTGTTCTTCAGTACTAATCGTCCACCGCCGTTCGTCTTTCGTCCTTTCCTTACCTTGTCATTGTCGTCAAGTCAAGAATCAAGAAATAAGAAGAGCAGCATGAGCATGAGACATACGTATACATGTCAAGAGCTAGTAGAATACGACAAAACTGCACATGCGCATCAGATGGATGCATATCCTCAGCCCAAACTATAGTCCGTGTACGCGTGTCCGGATTTGTCTGTAACAATGCAAGCCAAGCGAAATGG | |||||||||
gi|6859697|gb|AW287706.2|AW287706 LG1_271_D08.b1_A002 Light Grown 1 (LG1) Sorghum bicolor cDNA, mRNA sequence CTTCTTCCTCTTCCTCTTCAT EST sequence (targeted fragment marked with yellow): GCACGAGGATGTTGCGCTCCGGCGGTGGTTGGGTGCTGCTGCTGCTGCTTCATCATCATCGTCCGTAGACCGTAGCTGCTGGCCTCTTCTCATCTTGCCTAGGAGGAGGAGAGGGAGAGGAGGAGGAGGCGTGTCGTCGTCTGTGTGATGGAGGTGGTGGACGAGGTGGTGCGGGCGCTCGGCGCCGGCTTCGACCTCACGTCCGACTTCCGCCTGCGGTTCGCCAAGGCCAGCGAGGGCCGGCGCCTGGTGGAGCTCGGCGACGAGACGAGGGACGTGCCGCTCCCGGGCGGCGCCGGGGCCACGCTCCGCGGGGTGCCCCGCGACGTCGGCGTCGACAAGGGCGACCGCATCCGCTTCCGCTCCGACGTCCTCGAGTTCAACCAGATGTCAGAATTGCTTAATCAGAAATC | |||||||||
gi|45962919|gb|CN132678.1|CN132678 OX1_7_C07.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_7_C07_ CTTCTTCCTCTTCCTCTTCAT EST sequence (targeted fragment marked with yellow): TGGAGTGAAGTCAATCAATCAGCTTCAGCAGCTCGAGCACGATGGCCCTCGCGCTCGCCACGACCCCACTCACGCACCTCGCCGTTGCGCCGCTCCCGATCTCCGGCTCCCAGTCCTCGCTGCTGCTGCTCCCGCGCCGCGCGTCGCACGCCCCCGTCTCTCTCTCCCTCCCCCTCCGGTCCCGCCTCATCGCGGCCGTCGCGACCAAGGAGGAACCCGAGCTCGGCGGCGGCGGATCAGGAGGCGACGACGGTGCGGGAGGGAGCGGCGGCGGCGGCGGAAGCGACCCGAAGGAAGGAGGGCAGGAAGGGGAAGGGGAGGAAGAGAAGATGGAGCAGGGCCTGTCCTTGTCGCAGAAACTCACTCTCGCCTACGCCGCGCTCGTCGGAGCCGGTGGTGTAATGGGATATATGAAGAGTGGAAGCCAGAAATCCTTGGCTGCAGGAGGCATATGAGCCCTGGTTCTGTACTTCGTCCATACTCAACTCCCAGTGCGACCTGTCTTTGCATCGTCGATCGGTTTAGGTATAGCGGCTGCGCTTCTGTCAGTGATGGGGTCGCGCTTCAAGAAGTCCGGGAAGATATTCCCAGCTGGTGTCGTGTCCCTTGTATCCCTGGTCATGGTCGGAGGCTACTTCCACGGGATCCTTCGTAGCTCGCACGCGTGATGCA | |||||||||
gi|45995771|gb|CN152088.1|CN152088 WOUND1_79_E05.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_79_E05_A002 5', mRNA s CTTCTTCCTCTTCCTCTTCAT |