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mature miRNA: CTTGGACTGAAGGGAGCTCC
species: Petunia axillaris subsp. axillaris
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|227607236|gb|FN029041.1|FN029041 FN029041 Petunia axillaris subsp. axillaris pool of root and petal tissue Petunia axillaris

CTTGGACTGAAGGGAGCTCC
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TAACCTGACTTCCCAGGGGG

EST sequence (targeted fragment marked with yellow):
AGCTTGAACTTCAGCATATCATCAGCTTCTGCTGCATCCAGCAATGCTGGTTACAATAGGGGGACCCTTCAGTCCAATTCTTCAGCTTCACCATCTATTATACCTCACTTCCAGAGGTTTACTCCTATAGACGGATCACAAAGTTTATTCCTTGGCACCACTAATGCTGCTGCTGCATCTGTTTATGATGCTCGTTTACAGCTTTTTTATGGCAATGGCAACAGTTATTCAGATCAAAAAGGAAAAGGAAAGAATTGATCTACAGTTCCTATCTTCATCTATGGCAGTTGATGATGGACGCAGCCACTAAGTCTCAAGGGCAGCATGCTTTTCTCTGCCACAGGCTTATTATGCTTCTTAAATCCTCATTCTGCATTGTTCATTTGAGCACTATTGCGGGCATTCACATTTATGTAGGCACATTTGTCTCTTCTTTTTCCATATTCAAAACTTGTGTGTTCTTGTGAGACATATTTTCTTG



gi|227580693|gb|FN004165.1|FN004165 FN004165 Petunia axillaris subsp. axillaris pool of root and petal tissue Petunia axillaris

CTTGGACTGAAGGGAGCTCC
||.||||||||.| |||||
GAGCCTGACTTTCATCGAGA

EST sequence (targeted fragment marked with yellow):
GGCACCTTATGATAATTGATGAGCTTGGCATCTCTCTTATACCACCAGTACCAAAGAGATTAGCTTGTGGAGATTATGGAAATGGAGCAATGGCTGAACCTTCTCTCATCTTCTCAACTGTAAGACTCTTCTTCGAGTCACGATCACAATGAGGTGGCAGCAACATATGCCATGATCCACAAATCATGGTCAACGAATGTAGTCATAGGACATGGAGGAATTGTACTTACCATGCCCCAGTTGTGTTATTCTCCTACTAAATTATCTACCTCTTATCATCCTTGTACCTGAGAGCTACTTTCAGTCCGAGGTTCACGTTCATTTTAGATTGAATGAGAATATTGTACGACTAGCAGCTCCGACTAACTATGGGTGTGATCATGATCATGGTCATGGTAAAATTGATAGAGTTGTTAGTTGGTCAC