| mature miRNA: CTTGGACTGAAGGGAGCTCC species: Physcomitrella patens database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|208397279|gb|DC920633.1|DC920633 DC920633 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp CTTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): GATAGTAAGCCCACTACCACCGACAAGATTCATGAGAAGGTTAGTGANGGAAAGGGGTTTTTCAACAAAGTGAAGAAATCTTTCTTCACCAAGAGTCATTCATTCAGTGGGAGCATTCNTGAGTCCAAGCAAGGCACAGCGGCAACCTCCACTCCTCNTACAATCGCAGAAGTTTCCAAGGAAGCTGAGAGCGTGCCCGTCTCTACCCCTCCCGAAATTGAGACTCCCGCACCTGCAGCGCCTGAGGCAGCCGCTGTGACAACATCAGCCGCCGATGTTACTCCCTCAGAGACGCCTGCAATCCCTTCTGCTGAGACGGCTCAACCTGTCGCAGAATCTGTCACACCAGCCGCCGAGGCGCCTAAAGAAGCGCCGAAGGATGCGGTGGAAGAAAAGGCTGTGTTAAAGGAGGACAAACCAAAGTCCAAATTTTTTCAGAAAATCGTGAAGAGGCTTTTACCGAAGAATTCATCGCACTCGACTCCCCAATCAGCTGCCCCTGCCCCTACCCCAGTTGTCGCAGCTAGTGCGTGAGGAGGTTTGGTGTTAACTGCTTATGGTGGATAGTGTAGCATAGAGGTTTCGTTTGCAATTTNTTTTATAATACGTATTTGGCGTTCATATGGAATGCAATTCTCACGTGGATGCTGTTGTGTTGTTACCATAAAGAGGTGATATCCTCCA | |||||||||
gi|208383724|gb|DC928041.1|DC928041 DC928041 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp CTTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): CTAAGAGTGCAGAGCAGGGAGGTGCCCCGGAGCTTATTTCAGTTCGAGTTTGATTTAGAGCGTCGCATCCTTGCAGAGGCGGAGCAGGGAAATCTCAATTTTAGAGCTGGAAGTGGGGCCACTCTAAGTCAATCTAACTCGGAAGCTGATCTTGCTGAAGTGGAAGATGCGACGGTAGCCAAATATCTTGCCATGGGCCATAATAAAGAAGCTGTACAGTATGCTCTTCAAACTTATGGAGACGATCAAAACAAGGTTCTTGATTTCTGTCCTCCTTTCAATAGAATTCGAGAAATGGGGTTTGCAGCCGATCGTGTTGCAAAGGCCTTGGCCAGCTGTAATAATGATGAGGAGCAAGCAATATCATCTCTAGTTTCTTAATCTGTGTATGAGTTCAGGTGAGATCTCTTGAAGATCCTTGGAGCATTCTGTCGCACTCGTAACAAGTTCTCGGATTGTCTCGGAGGTGGGCTTTTCAACTTGCAGGCCTTAAGTCAAGGTCTTCTTAGAAGCGACTTTCCTGCACATGTTAATCCAATGATAAAACACTTCAAGAAACTCATCTTTTCTTGATGTGAGTAACTATTAGTTTCATTAGGATTACCTTTGCAATTAGCGCAGTTCGGACGATCTCAGTTTTGGACACACATAGGTCATATTTCCAGAGAGCTCATTCGGTAGCAGCGTTACCCATAATGAATCAGGTTGCAGAAATTCGTGGAGCATTAAGTGGTACTTTCATGGGAAGTATGTACATTGGAGATGGTTATATTCCTTAGGTATTCAGCGTAATAACAAGTCTTAGAGATTACACATCTTTGCCACAGGCTAAGCACTTAGTTCTCAATCTTGTGAAATATAGTACAAGTATCCACTATTGACTGTCTCCCCTTGTCTTCACTGTTGACCCTTATACCTCGACTCATTT | |||||||||
gi|208386515|gb|DC952738.1|DC952738 DC952738 ppgs full-length cDNA library; green sporophytes Physcomitrella patens subsp. paten CTTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): TGATCAACAGGNCNTGTATTTTCTGTAGCTATGGGAAANGAGCTATCAAACTATTTGACGTACGCTCTTATGACAAGGGACCTTTTGATACATTCTTGGTAGGGGGTGATACAGTTGAAGTGTCTGGTATGAAATTCAGCTATGATGGCAAGCTTATGCTACTGTCAACATCCAACGGTCATATCTATGTTTTAGATGCCACACTGGACGGAAGGTTCATGCTTTCACTGTTGAACCCAACCCTGACGGTGCGGTACTGGAGGCTTCCTTCAGTCCAGATTCGCAATTTGTTATTGCAGGGTCGGGTGATGGCTCTTTGCGAGCATGGAACACGGTGTCGGGTGCTGAGGTTGCATGCTGGACGAACAACGCAGGGGTGCCTGCATGTGTGAAGTGGGCGCCTCGCCGGTTTATGTTTGCTACTGCATCAGTTGCATTGTCCTTCTGGGTTCCTGATTTATCGAAGCTTCAGAAAGCAGATAATGGTTCCTAAAGCAGATAATGGTTGCAGATGACGACGACAACCTAATTCTGCAAATGAGTATCCCCCAAGGGTCCCTCACTTGTGAGATTTATTGAGGCTCTTAAAAATCACCTCAGTTTTGTATCATACATAAGTCATGGAATATGCCTGCTGTAGGAAATTCATTTTAAGTCCATTTTAAATTCATTCCTTTACAGGGCATGAAGAAAAGCGTATGCTGTCGTTCCATGTGCTTGGTTTGGCGAATCAATTGGTAGACAATGAAGGTTTCGATAAAATCAATGTCTTCAATGCCTGTAGTTAAGCAGCAAGCATAT | |||||||||