| mature miRNA: CTTGGACTGAAGGGAGCTCC species: Solanum lycopersicum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|58226424|gb|BP882953.1|BP882953 BP882953 Lycopersicon esculentum maturing fruit Solanum lycopersicum cDNA clone FA24BH01 5', CTTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): ATGAACAACAGCAACTACTGAAGTACTTACCACCTGTTGATTCTTTTGCGCCTCCAGATAGTCTTAGAAGCGTGTTCGAGAGCTCTCAATTCGAGGAGAACCTCTGTTCCTTCCAGAAACTTCTTGCAGAAGGTGTTTTTGATAACTCTTTTCCAGGAGTGACATTAGAAGATTGTAGAAACTTGAAGAGATTTATATTATGCTATTTAACAAAGTCAAAGTGGGTGCAACAATATAATTTACTCAAGGACACAAAATGTAAGAATAGTAGCAGCGGTTCTGAAGTTGCCGGAGAGCCAAATGCTGTTGGTACATGTCATTCAGCTAATGTGAAGAAACCACGGGAGGGGCAATATCCGAAGTGTTCAGGTGCAAAGACGACAATGAAGAGCCCCAAAAGGGTGGTGATGAAAAGCATCTATGAGCAGAAGGAACTAGTAGACAACGATGGCTCTTGCTTCAGTCCAAGAAGCTCGTTTGCCT | |||||||||
gi|117694711|gb|DB707321.1|DB707321 DB707321 Solanum lycopersicum cv. Micro-Tom leaf Solanum lycopersicum cDNA clone LEFL1094AH0 CTTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): GGAATAGACAACCAAATATATTTGGGAAATCCTCTACAGCCATTAAGACCAATGTTTAGTATTACGGGTGAGCATAGAGCGGAGCTGCAGAATTTCCCATTTGGTGGTGACAACCTAGTTCCGGGTGTTACCTCTAGTAATACTAGTACTAATTATAACGAGTACAATTTGAACTTCAGCATTTCTTCTTCATCATCATCTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCTTCCTCCACTTTGCCTCATTACCAGAGGTTTTCTCCGACAGATGGATCATATCTTGGTTCAACAACTGAATATGATGCTCGTTTACATCTCTTCTATGGAAATGGCTATGAACATTCTGATCAGAAAGGAAAAGGAAAGAACTAAACTTCCATGGCAATTGAAGATGGAAGCAGCCTCTGCAGTCCCAAAGGAAGCAATGCTTTTCAGTGCAACAAGCTCATATATTACTATTATTGTGCTTCTTAATTCCTTATTCTATGTTTTCATTCTGAGTACTATCTGATTTCTATGGGAGAAATCCCTTTGTTTGCTTCTTCTGGCCCAACTTCAGTTGGCGCACAGGTACGAAACTCAGCAAGGTTGAGTGTGTTTTTGTGACATCTCATTTGTATTTAAGATTTGCCCTCATTTGAATTTAA | |||||||||
gi|225926092|gb|GO375496.1|GO375496 ctsc6p23 Tomato Seed Library [C] Solanum lycopersicum cDNA clone cTSC-6-P23 5', mRNA sequenc CTTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): CGCGGGGCGCGCTCTGACTAGTGGATCCCCCGGGCTGCAGGAATTCGGCACGAGGCAGGAGTGCAAGCGTAGGAGATATTTTGAGAACTCGCAAGATGAGAAGAAGCGCAGGACGCGTGACGCTGCTAGGCGCAATCGTAGAAGACGTGGCCCACCAAGAAACTTCTCAGATGATAAGCAAGAAACGACTAAGAGTAAGAGGGATGACGATGGGGAAGATAACTGGGAACTTCCTGATGGAGGTGTTGCCTTTTGATTTATTGTAGTTTCTTTTTCCTTTTTTTGGTCCTTCTGTAGAAAGTGGTTTATTTCCCACTTTGGAGAGAATTCTATTCATGTAATTTCCTTTGGGAATCATTTTCACTGATTTTTCCTGCTGCAAAAAAAAAAAAAGGAAAAAAAAAATCCGAGGGGGGGGGGCGGGTCCCCTTTCCCGCCTAAGGGGGGCGATATGGATGTTGGGGGGCCTGCTTTTAAAAAAAATTGTCTCACAGGGAATGAGTTCTTGAGGTCGTGTACTGGTGCAATACCCAGAACTCGGGATTATGACAAACAGCATTGCAATGATCTCCATCTCTTGCCTCCTCAGGTAGAAAACCCAATATATGGCTGGTAAATAGAATACGTAACTAACATGTATATCATTATTTCTTATATGTATTATAGGATGTTAGAAAAACTGGATGCTTGTTAATCCTTAGCTCCAATTCTAACGGTCTAGGTTTTGATGCTTTCTAGCTATTGATGTTGATGCAGTTAGCCCTGCAGGGGTAGTTCATAGGATTTTATACGTAAGTTTGTAACTTGGTATAGTCATACCTCTTCGGTTTCATGTTTATGGGATCGGGGTTACTTTCAGTTTAAGATCATACGGTCTCTTAATTTAAGTGGAAAACTTCCATGGACCATTAACAATTTGGTCACCTTGGACTGTACTTTGTCCACCTCCTATTATATTTTAAGGTTTATTGGTCCTGGGGGCACCCCCAATTTTTCTTTCCAAAAAATAAATGATAGAGGAGGGGCGCCTCGGATGAATGGTAAAAAGAAGAAAAAAATATTATTGCCTCCCTGGGGGGGGGGGGCCCGCGGACCACTTTTCCCCCCTTTTAGGGGGGCCGGTTTATTAATTTTTGGGGGGGGGG | |||||||||