| mature miRNA: CTTGGACTGAAGGGAGCTCC species: Vigna unguiculata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|182396805|gb|FF393782.1|FF393782 MOODP87TF MOO Vigna unguiculata cDNA 5', mRNA sequence CTTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): GCTCTTCAAAATTTAACAAACTCGGGGATCTCTTTGTTGGTGGCGGTCCTTACTATCTGCCACCTCACGATGCTTCCAAGTTTCTAACTTACACCCCCCTCGTTACCAACCCCCATAGCACAGGCCCCATCTTTGACGACGATCCTTCCTCGGAGTACTTCATCGACGTTAAGTCAATCAAAGTTGACGGCAAAACGGTCAACGTTAACACCTCTCTGTTGTCTATTGACGAACTGGGAAACGGCGGCACAAAACTCAGCACCGTTATTCCTTACACCACGTTGCACAGCTCGATCTACCGGCCTCTGATGAATGCTTTCGTGAAGAAAGCGGCGGTTAGGAAAATGAAGAGAGTGTCTTCGGTGGCGCCGTTTGGGGCGTGCTTCAGTTCAAGAACGGTTGGAGCGAATGTGCCGGCGATAGATCTGGTCCTTGGAGGTGGGGTTGAGTGGAGAATCTATGGGTCGAATTCAATGGTGAAGGTTAACAAAAAGGTGCAATGCCTTGGGTTTGTGGATGGGGGTTGGGA | |||||||||
gi|182645160|gb|FF538798.1|FF538798 MOPAI06TF MOP Vigna unguiculata cDNA 5', mRNA sequence CTTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): GCTTCTTCGGGACAGTTCCAATTGGGACATGCCCTTCCCATCTCACCATTCAGTGGAGAAAACCAGTCGGATCAGATGCAGCATTTTTCGTTCATGCCAGACCACCTGAACATGCCGGCCGTGGTGACTTCTTCTTCTTCTGCTTCTCAGCCCAGCGGGGGTGACAATTACAACCTCAACTTCAGCATCTCTTCGGGCCTTGCTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCTCCGTCCTTTTTGCCTCACCTCCAGAGGTTTCAACCTTTAGACGGATCATCCAATCTACCTTTCTTCATCGGAGCTCCTGCTCCTTCTTCTGCTCCTCCAACCATTGACAGCAACAACAATAACAACAACAACCACCACCACCACCTTCAGTTCTCTCCCGTCTTCGATGGCCGCTTGCAACTTTGCTATGGCGATGGAACAAGGCATTCTGACCACAAGGGCAAGGGAAAGAACTAACTTCCTCCAGGAACACCACGTTTATTTTCTTCCTGGGGTTGTGGTCTTTGTTTTTTGTAGGAGCAGCAAGTTGTGTCCCCAGCTTGGCTTCTGCATAATGGAGGATAAGTTGCTGTCATCAAGTATTGTTGGTGTTT | |||||||||
gi|190541283|gb|FG926223.1|FG926223 UCRVU09_CCNT7626_b2 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vign CTTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): AAAAAGAGAAAGAGAACGAGTCTGGCATTGCACACCACCACCACCATCACCACCACCACAATGTCAACAACCCCAACCATATGTCTCACACTGCTTCCTTCACCGAGCTTCTCACCGGTGGGATTGGGAGCACAGTAACGGTTAACCCCACCACCACAGCAAGTCCTAATGGATCATCTGTTCATCAGATCCATGAGGGTCACGACGAGGCCAATATATTCAACAAGGGAAGACAACAACAACAACAACAACATTGGTCTTCAGCAGTGACACCTATGGACTACTTCAGCCAAGGAGGCCTCTTGGTGGGACCTTCATCATCATCTGCAAGAACTCAACACCAACACCAACACCAACATCAATCTTCTTCGGGACAGTTCCAATTGGGACATGCCCTTCCCATCTCACCATTCAGTGGAGAAAACCAGTCGGATCAGATGCAGCATTTTTCGTTCATGCCAGACCACCTGAACATGCCGGCCGTGGTGACTTCTTCTTCTTCTGCTTCTCAGCCCAGCGGGGGTGACAATTACAACCTCAACTTCAGCATCTCTTCGGGCCTTGCTGGGTTCAATAGGGGGACCCTTCAGTCCAATTCTCCGTCCTTTTTGCCTCACC | |||||||||
gi|190555544|gb|FG940315.1|FG940315 UCRVU09_CCNT16812_g1 Cowpea UCR 707 Mixed Tissue and Conditions cDNA Library UCRVU09-1-2 Vig CTTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTAAATTAAAGCTTGCAGAACTATATTTTAATAGAAAATAGTTTGCTTATACTTACAGTATACAAATTTAGTGTTACCTTGACAGCAGTGTTACAACATGGACCTATTTGGCATATTCTCATCAGAAAGGTCCATAGGGTCCTTGTTTGTGATCTTTACCAGTTCAGAGAGAAAGCTCCTCATGACATGGTGTGGCAACAAAATTGGCACCACAATTACATCCTCTCCTTCACTGTTCCTAAAACGTCCATAGAAGCTAACAAAAGGTATAGCCCCAGCTGGTCCTCCATATATAGGACTCCCCCACCCAAAATCCACTTCATAGAACCCCACTTGAGTAGTGTCCCCAATAAGGTAGTTCCCTTCAGTCCTATACATGGGTCTACCCTTTAGAACCATAAGATCAGCCACAGAACTCACATATTCTGCACCCATTTGAGCCTTTGCCATTTTTACCAACTCCAATGCATACCCCAATGGGTTTTAGCACAAAGGCCCAGCCCTTGAAAGAGCCATTGGGAAGGCAAAGGCATTGCCATAGTACCCATTTGGCACTTGCAGGCCCAGTTTGCCACGAGCAGTGATAAAGGGTGACAGGCCTACACTCTCGTTGGGTTTCAGCCCAAGTGCTATAGTTCGACATTTCCACAAACAGGCAGAGAGCACCTCAAAAGTTGAAGAATTTTTAAGGTGGTTGGGTAGGTGATTCCGAAGGGTTGCAATCTCTCTGGGACCAAAGAAAAATGATCGATGGTCCATT | |||||||||
gi|182401163|gb|FF396808.1|FF396808 MOOFD55TF MOO Vigna unguiculata cDNA 5', mRNA sequence CTTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): GTGAAGCTTCGTTCAGTCCAGGAAAGTATGCCATGGAACTTAGTTCTGCAGCTTACAAGAACCTGTGGCGATTTGATATGGAGTCACTGCCAGCAGATCTTATTCGGAGGGGCATGGCTGTAGAAGACCCTTCAATGCCCTGTGGTGTAAAACTGGTGATTGAAGACTACCCTTATGCTGCAGATGGACTCTTGATCTGGTCTGCCATAAAAGAATGGGTAGAATCTTATGTTGGACACTTCTACTCTGAATCAAATTCAGTGACATCTGATGTTGAACTCCAAGCATGGTGGAGTGAAATCAAGTTAAGGGTCACTGTGACAAAAAAGATGAACCCTGGTGGCCTAAACTCGATACCCAACAGGACCTATCTGGTATACTTACAACAATGATATGGGTCGCTT | |||||||||
gi|182643120|gb|FF537171.1|FF537171 MOPA261TF MOP Vigna unguiculata cDNA 5', mRNA sequence CTTGGACTGAAGGGAGCTCC EST sequence (targeted fragment marked with yellow): GGGTACTGTGTCCAAACATGTTAATGTTTGTCACTCCTCTCTCTCCCTCCTTCGCCTATCTCTCTTTCTCTGTGAGACCCGTTTTCTAATGTTTTGCTAGAAGTCTAGCCATCTTTGAATATAAATGTTAATTCTATGTTTTTATTTTCTATTAGACTGCACAGTAAGGTTTGCATTGCTTTGTCCATGGGTGGTTTTTTCTTTGACAAATGCAGTGCTATAGAGTTTCTGTGCTACAAATACTAACATGCATGTGGTTGTATAGAGTATGTGATGAGAAAACGAATTAAATTTAAATTATGTAAGGGTTACGAAGGGGCTCACTTCAGTCCAGTCCGCGGCGGTAGAAGGCTGTGACTCAGCTGCTGACTCGTTGGTTCAAGAGTTCACCATTTAAGGTCAATGTCAGCCCATGAAACAGTTAAGGTTGTAACAGTTAAGGTGGTGCGCTTCTGATTCAACGATGCGGGAGCTGCATTCGGCCGTCACTGTCACGTCTTGGACTGAAGGGGCCTCTTCATTTCCTTTATCTGTTTGGCTCCTGTTTGGTTTTTTTTTACCAGGTATTGCCATGAAGGTTGCAAATGGTCGATTCGAGATTATCAAACAGTTTTATTGAGATTACAGTTGCGATGAGAGGTATAGGCTGAACTTGTTATTTTACCTTTTTGATCTTGTAGTTCCTTTTTGTTTTATTGTATGTTAGAGTACTTTCTGTTACAGTATATTCACTTGTTATCGGTATTTTATGTTGATAGGAATTCTTCTGCAGCGGCTGAAGGAGACTCTTGTTTAACTGCTGA | |||||||||