| mature miRNA: CTTGGATTGAAGGGAGCTCCC species: Pinus taeda database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|51495527|gb|CV032702.1|CV032702 RTNACL1_17_G07.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone RTNACL1_17_G07_A029 5', m CTTGGATTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): AGTCGGCGCGAAGCATCACAAGACGAGATATTGGGCGAGACCCTGCAACAGATGACAACGAGTTGGATTGCTTGTCAAGAACAAGCAAACTTTGTATTGTTTATTATCATATATCATCTTAACTTCTGATTTGCTAGTTTGTTAAAATTTGTTTTTGCAGGGAGCAGGTTTCAAAATTCTTTTTCATTGCCTTAGAATGTTATAGCATAGTCCTCTCCTATAGGTTCTGTCCCGCTATATGTTTTTGTTTCAGGATTTTGTAACGTCAAGACTAACTCTGTTGGTATTTGTTTCTTTATTGTTTTTTCTTGTGTTTGCCTTCATAGATGTTTTAGCTCTTAATTATTATAGTTTGTGGGAGGAATGACGGTATTTCTATGGAATCAGTAATTTCTATTTTTGGTATTTTAGTTATCAGTTTTGAAAGTTTATCAATACTGGTAGGTTTTGGTGTAATAGTAAATTTTTTCGTGGTATGAGAGCCTGGACCCAGGTTCAAGTTGGATTGCCATAACTGAGTTTGACTGGATATACTTCTATAGAATCCTTAACTTTCAGCATAAAATTCCTAATTACAGTTTTAGAAAGTTCACCAAGATCCTAGTTACACGTTTAGAAAGTTTACCAACACCTGCTAGATTTTACGTTGATGTTACGTTAGATTTCTAATATAAAAGGGAGGAGGTTACGGGGAGCTTTCTTCAGTCCAACGAAAGGCCGTATAGGGATGATTCAACTGCTGGTTCATGGACTCTACTATCTT | |||||||||
gi|74167500|gb|DT637429.1|DT637429 EST1152360 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMH355 3' end, mRNA CTTGGATTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): GCTGAAGTCCAATCCAAATTCCATGGTCTCCTTGAGCAGTAATAGCAATAATAATAGTAATAGTTTCTATTCTGTATTTGGGGCTTCGGGCCTCAAATTGGAGCTCCCTTCAAGCCAATCAGCGGGGTCTGCTGGAAGCGCAGACACGCCAAAGTCCAATCTATCTTTTACAAATTTTTCCTCCTCTTCTTCTTCTTTTCAGCAAACCAACTGCCTGATTTCAGAGGCGGACAGTTTTAATGACAACAACTCGGGACTCCTGGAAGCACTACTCATACAGGAAACACAGTGTCGTAATAATAATAATAATAAAGATTTGGATTC | |||||||||
gi|70774493|gb|DR686017.1|DR686017 EST1076094 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWABB24 3' end, mRNA CTTGGATTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): GGAATCCTATGCCATTTTCTGGGTTGGGTAATGTTTCCATGGGCCCTTTGTTTTATCAAGCAAATCCAATCCAGCGAGTCAAGAGAGTTAGGGACACTAGTTTCATCATGGGACCCCCTTCCAGCCCTTTCGGTCGCATGGGTGTGAATGGTCACATAGGGATGAATGATGTCAGTAAGAGCTTGCAGCCTGGATTTAAGGCCAGAGTTCCTTACCCCCTCCAAGCTGCTAGATCGGATTCATTCGTTGCTCAAGGCTGCTTTCCCTATGACCCTAATCTCAGCAGCACTAGTAATCTGCCCCTGGGAGGGTTTTCATCAGGCAGCCATGCCATTATGAATGGTACTTTCTCTTCTTCTAGGCTTTTTTCTGGCCAGAAGCTGGAGCTCCCTTCAAGCCAATTTGCTGAGTCTGTGCAGACTGCAGGCTCAAGCATCAATCCAGTTTTAAATAGGAGCACTCCTCTTTTGCTGCCGCCCGTTCCTACTCAGACGATCAATCAAGTAGACTACAGCTTCTCTACGCCAAAAAATAGTGGGTTGTTAGAATCTATGTTCCAAGAAGCTCAAACAATGGGTGGGGGTTAAGGCTCATTCCTCCTCAAATTCCTCGATTGACCTGCAGGGGGGCTCCAAAAGCAGTATCAGTAACCCACTGAACAATGGGTTTCCTATGCAGATCAAGATAAAGCGTGGCGATAACA | |||||||||
gi|30357247|gb|CD018597.1|CD018597 NXLV_039_B10_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA clone NXLV_039_B10 5', mR CTTGGATTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): CGGCCATTATGGCCGGGGGCTCTATTCAATTCAATAACAATAAGAGGAAGTTGGGTATTGTTTTATCAGAGTCCCATTTACTGTTTTAGGGGCTTTANNTAAAGTAGTTTGCAAGCTATATATTATTACCTCAGGGTCTCTGGGAGTGTTCAGTATCTGAATAAGTGNNNTAGTTGC | |||||||||
gi|67189868|gb|DR078315.1|DR078315 RTFEPL1_3_G01.b1_A029 Roots plus added iron Pinus taeda cDNA clone RTFEPL1_3_G01_A029 3', mRN CTTGGATTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): CAACAATTCACTATTCACTATTGTCGAAATTAAATATACAATCAAATATTATACAAAATTGACAGGATAAAAGCCTGTTAATCACGCTATTCATGATGGATGTTCATATATGTATTTCACAATATAGATAGATCGATCATGAAATGTATATATACATCAATTTGACGTTATATCTACGCTGTCAGATGTATATGAACAGGAATCTAACTAATGGTATATGTACACAACCAAACGCCTACGCAACTCTCCAACCGCGTATTGCATTAATATTCTGTAACTACTCTGTGCTTATTGCCCGCCATGAATAGCTATCAGTGTATATAATAAAAGTACAACAGCAGGGTCCGCCATGTACAATGCTATATAAGAGTTAGATACTTGTAGGTAAATGAACCAGTAGCCGGGAGTTTCGAACGATCTGGACAAATAAATCACACTTCATAGTTAGGAAAGTACAATGGAAAATTTTCAATGTCATGAATTCTAAGAGAAAAACAATTTACTAATTTCAATATAGAGTCAGTAGGAATGATCCAAACACATGAGAGATTGAACATAAGCAGAATCTGTTAAGCTGAAATGTGAAAAGTATCATATAAAAAAACATAATGTTAACCCGGCTAAACAAAAGGAAACAGCAAAACCTAATTTCAGAAAAATGTATGCTACATAAGGGAGCTCCCTTCAATCCAAGGAAAAGACATTTCCTGGACAAAATCAGCTCCCGCATCATTCACACATCAACCCATTTGTTTCGTTTGTGGGTAAAAAGTGAGTTTGTGAAT | |||||||||
gi|74163747|gb|DT633678.1|DT633678 EST1148609 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFX52 3' end, mRNA CTTGGATTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): CGGCCGGGGGGCTCTATTCAATTCAATAGCAATAAGAGGAAGTTGGGTATTGTTTTATCAGAGTCCCATTTACTGTTTTAGGGGCTTTAGGTAAAGTAGTTTGCAAGCTATATATTATTACCTCAGGGTCTCTGGGAGTGTTCAGTATCTGAATAAGTGCTATAGTTGCAGAAATTGGGCTGTTCTTTAATGCCTGCAGAGTTATTTGTGAGCGAATTCTTAATTTGGATGCAGTTTTCTGAATGCCCACATTAGATTTTATCACTGAATCCAATGTGGGCACTCGCAGAAATTTTACTTAAATCACTGCACGGTTGATCAGAGTTTTTGCGGTAGGCTGCGGCAGTGTATGCTGCTATCGTTTTTGTGGGGCGGGCGTCTGCAAGGCGGAGAACTTTTATTTCTATCTAGTCCTTACTTTGGTTTCAGATCAGGGAAATTCAGAGAATTTTCTGCATTTTTTTTTCTTGTGGGTACATCTGTACATATAAACAAGATGCTGCTTGGAAAGCGAGCGAGGCCTACAATGAGAAGAACTACAAGCATGTCATCGCTTGGTTCAGATTCTTGTCTTGAGCTGAATCCCAAAGAGAAGCAGAGACCATCTCAGGATTGCTCCTCAATAAAGGGCATGACCCTAGGAGAGACTGCACAAGGGCAAGCTGTGGCAATGGGTGTACCAATCAAAAAGGGCATTTGGTGGCCATTGAACGGCTTTGCTTTTCCTAGGCCTAATAGAAGAAAGAATTCAGAGCCTGCCCACTTCCTGCATGCGTGTTTTCTCTGCAAACGCCGGCTGGTCCCAGGCAGGACATCTACATGTACAG | |||||||||
gi|51495441|gb|CV032616.1|CV032616 RTNACL1_17_G07.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone RTNACL1_17_G07_A029 3', m CTTGGATTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): ACCGTGGAAAAAAAGAATTTATAAGCATAAGCTATTGCAATATAGGACAAGCTCTATTGCGTTTAATAGCAATTTTTTGTACTACAGCATTGGATTCATGACACAATTTGCCTCGCCTCGAATCACATAAAAGCAGTACGTCCTTAATAATTTGTCTTATCTCTAATGGGCATCGATGACTGGCCATTCGTGATCATGTCCATTCCGGCACATGCACAGCATGAATTTGTTGGAATGTTTGTAGAATTTTGGATACCTGCCAAGACTAACAACGTATCAGTTTAATACAGCAATTTCGGCGAATCACTTTGCTTGTTAAGCGACCAACGCGAACTTGCTAGCTCAGCCTGTAAAGTCGTTAATATAAGGTAGTGTAATAAATATTACGAGGAAACAACAATCTTAAAAAGCGATTGATACAATTCTTTTAATGTGTTATTCACGGTTGACAAGCATGCAGATTTATAACTATTCATAGCAGAAATGACATGATTAAATGTGTTTGCACAGAAGAACTAACATGAATTATTCAATTTACCATAACAAAATATAATTTCACGAATTGTAAAGAGGCAGTAGACTTTCTGGGAGCTCTCTTCAATCCAAGTAAAAACAGCGTAGTGGCAATACGACTCCCGTGTCATGCACACCATTATCTTGCCGCCAATACTGAACCTCGAGGATTACAAGATAGTAGAGTCCATGAACCAGCAGTTGAATCATCCCTATACGGCCTTTCGTTGGACTGAAGAAAGCTCCCCGTAACCTCCTCCCTTTTATATTAGAAATCTAACGTAACATCAACG | |||||||||
gi|34361364|gb|CF402947.1|CF402947 RTWW1_24_E10.b1_A015 Well-watered loblolly pine roots WW1 Pinus taeda cDNA clone RTWW1_24_E10 CTTGGATTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): GGGTGAAAAATTCTAACAAATTGCTTACATAACACGATACAAAAGCAGTTCATATCAGATTGGATTATGAACCCAGGGTTGTGTTACTGCTATGTTACTGCAAGAGGTTTTCTCGTCTTTAATACTATCATCCAAGCTTCAATGCTTGTAGTAAATTCTGAGATGCTCCCTTCAATCCAAGTTTTCCTTGGTCTGGAACTTCTGATTGACCCAGCTTGCCTTTGTCCAAGGACTAAGCAAGATTGTTATTTCCTGATCCAGATCTGGGGATTAGTAGTTTCTTCTTCCACCAAATATTGTTGTATCACATCTTGTTGTTTGGATGGGGTGCCCCTGATTTCTTCTTGTTCTATTTTTGGCTCATCCATGGGCAGGTCTGAGCCATCTAGCTCAACATCACTAATCACATGATGTTCTACTTTGGTACCAACGGAGCAGGTGGATTATGTTGGTAATTCTCAAGTCTATTTCTGTCAGAAAATCTTTGCTGGAGTCCATACCCACACAGTTTGAGCATTCGAGCATATGCAGTGAATCGTGATATTGTGGTTTTTAGTTTCCTCACTTCTGCTGTGGTGATATTGTGGTTCTTAGTTTCCTCACTTCTGCAATAGAAAAAACAGTTCATGTCAGATTGGATTATGAACC | |||||||||
gi|48937172|gb|CO166631.1|CO166631 FLD1_63_H07.b1_A029 Root flooded Pinus taeda cDNA clone FLD1_63_H07_A029 3', mRNA sequence CTTGGATTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): TGTTGGAGCTCCCTTCAGTCCAACCAAAGCTTGTGCAGCGGTGGTTCAGCTGCTGATTCATGCATTCTACTTCCCTGTCCGTGACTCTCCAGCAGCCTGAACAAATCAATCAATCGACCTGCATGACAGGATAGTGGTGTGCATGACGCAGGAGATGTACTGTCACTAAACACGCATTTCTTGGATTGAAGGGAGCTCCACTTATCCTCATCATCTCTTTCTGCAACTTGTTTATGGAATTTGTTTTGTTTTTAACCTATTTCATCTCTAACAATTTTCTCTTCTCTATTTGTTTTGGGCTTGCTAACAACTGTTATGTGCCCTAAGCCCTGCATGTCAGTGTTCCAATTTTTATTATAGCTGAATCTTTGTTCGAGTCAAATAAGACTTAGGTTTAACTTGATTGATCTGCATCGCTATAGTTTCAGGTTTTGTATATTCTGGTTGTTCACTATGATCTAGTTAGAGTTCGATCGAAAAGAATGGCAAATCTAATGATTATTTGTTGAGTGGCTGATTGTGGTACGTTTCGTTCTGTGCAAGAGTTTGGCCGGTCGCTTTTACATGGTTATGAATTATATTGTTATTTCATTTTAATTCCGATCTGTCGCTGAACGATTGATCTATAGTTGATTGTAACCAGGTTATGTATGAACTGGCCAGAGTGATTGAAAAAGTTTCATTTGTTACAAATAAAATACGATACCAATAATTAATGCTTCAGTGATATGAAATGGTTTGATCCATCTTATTGATTTTTTTTTGCAAAGTTTTATTCTATTACAGAAATAGAATTGTGATT | |||||||||
gi|67560399|gb|DR101044.1|DR101044 STRR1_70_D10.b1_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_70_D10_A033 3', mRN CTTGGATTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): CCTTAAAGTTTTTCTATTGCATTAAGCGAAATATTCACCAAGGGTTCAACTAAATTCAAAATAGGATAGAGTACACGACGATCACTCTCCTCGATATATAAGAAATCAGTATTCAACATTTCAACTATTTAGTTTGAGCCTATGAGCCTACATAAAATAGAGGAAGACCTTCATTTATCTCATAGCCCCTTGGTCCTTCCTTTTCCTAATGCTTTACGTGCTAATTTAAGACCAAATATCTAGAAAATCTTCTTGCCCCTAGCTTAGTTTCCATCGTTGCATGAAATTTTCACGCCAAGCTATGAAAGGGAAGAGACGGAATCTTTGCATATACATAATGAATCTTTGCACCCGGAAATGAAATGAATAATGAACAAACTGTGGTGACTTTGTTGGGTTGGCGTATGCATAGATCATAGGGTATGATGATGTCACTGATCACATGGTGGCCGTTGTTTTGGTTTCTTTGTTTGAACTTCTATTGTACTTCATATGGCTCTTAACCAGTTGGCCTGCAGCCAAAGCAGACATGAGAGACAGCTCTCCAGCCAAAACTGCTCCTCCCACAATTCTTGCCAACCTCTGAGCATTCGCCCCAGGAGATTCCACGTTAGCTCCTTTCACTCCAAGGATATTCAGGCAAGCAGCTTGTGAAGCCAACTGTGTTCCACCTCCTACTGTTCCCACCTCAATACAAGGCATTGTGACCGAAACATGCAGATCCTTGCCACCGTTAGATGCCTCCATCATTGTAATGCAATGAGAGCTCTCAATGTTCTGGGCCGGATCTTGGCCTGTTGCAATAAACACAGCAG | |||||||||
gi|48932495|gb|CO161954.1|CO161954 FLD1_32_F02.b1_A029 Root flooded Pinus taeda cDNA clone FLD1_32_F02_A029 3', mRNA sequence CTTGGATTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): TTCTTTTGACTCGAACAAGATTCAGCTATAATAAAAATTGGAACACTGACATGCAGGGCTTAGGGCACATAACAGTTGTTAGCAAGCCCAAAACAAATAGAGAAGAGAAAATTGTTAGAGATGAAATAGGTTAAAAGCAAAACAAATTCCATAAACAAGTTGCAGAAAGAGATGATGAGGATAAGTGGAGCTCCCTTCAATCCAAGAAATGCGTGTTTAGTGACAGTACATCTCCTGCGTCATGCACACCACTATCCTGTCATGCAGGTCGATTGATTGATTTGTTCAGGCTGCTGGAGAGTCACGGACAGGGAAGTAGAATGCATGAATCAGCAGCTGAACCACCGCTGCACAAGCTTTGGTTGGACTGAAGGGAGCTCCAACACATCCAAACCTTATTCTTTCTCCAAAAACTATTCA | |||||||||