| mature miRNA: CTTGGATTGAAGGGAGCTCCC species: Selaginella moellendorffii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|169056865|gb|FE466456.1|FE466456 CAOS24633.rev CAOS Selaginella moellendorffii mixed tissues; whole juvenile plants with root CTTGGATTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): GGAAGGCCGTGGAACCCCACGCGCGGATTGACAGCGTGTCCGGGATCGCGCTCCTCTCGCTTGTTGTCGTGGTGCTCTCCAACGTCGCGTCCAACGTCCCGACGGTGTTGCTTCTGGGGTCGAGGGTGGGGGCGTCCGCGGCGGCGACAAGCGGCGCGAGCGTGACGCGGGCATGGCTGGTCCTGGCCTGGGTCAGCCCCGTGGCGGGGAATTTCACGCTTGTTGGTTCCGCCCCCAACTTGATTGTGAGCGAGCAAGCGCCCCGGGCGGAGAGCGATAAGTTCAATCTTTCCTTTTGGAAGCACTTGGCGTTTGGAGTGCCATCCCCCTTTATTGTCATCGCGGTCGGGCTCCCTTTGATCCAAGGCTGACGAGATGGTGTCAGTGGTCATATCATCGGATATTTGTCGATCGATCGATCACTACTCCGTGTAAAAGGAATCGCGGGGAAGTTTTGGGTTTGATCGATTGATGGAGATGGACCAAGAAACCAACCAAGTCCCCAAGAAAAAAACTCTTTAGTTTATGACTGATAGATAAGTCTTTCCAAACTGCGGGAGCGATCCCGTAAGAACAAAAAGAATGAAGAAAAATGTTTG | |||||||||
gi|169114572|gb|FE515521.1|FE515521 CAOW386.rev CAOW Selaginella moellendorffii mixed tissues; whole juvenile plants with roots CTTGGATTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): GGGATGTTCGTCACGGTGGACGGCTTCAATCGCACCGGAGCGCCCGGCCAGCTCTGGAAGGCCGTGGAACCCCACGCGCGGATCGACAGCGTGTCCGGGATCGCGCTCCTCTCGCTCGTCGTCGTGCTCCTCTCCAACGTCGCGTCCAACGTCCCGACGGTGCTGCTGCTGGGGTCGAGGGTGGCGGCGTCCGCGGCGGCGACGAGCGGCGCGAGCGTGACGCGGGCATGGCTGGTCCTGGCCTGGGTCAGCACCGTGGCGGGGAATCTCACGCTCGTCGGCTCCGCCGCCAACTTGATCGTGAGCGAGCAAGCGCGCCGGGCGGAGAGCGATAAGTTCAATCTCTCCTTCTGGAAGCACTTGGCGTTTGGAGTGCCATCCACATTCATCGTCATCGCGGTCGGGCTCCCTTTGATCCAAGGCTGACGAGATGGTGTCAGTGGTCATATCATCGGATATCGGTTGATCGATCGATCACTACTCCGTGGAAAAGGAATCGCGGGGAAGTCTTGGTTTGATCGATTGATGGAGATGGACCAAGAAATCAACCAAGTCCACAAGAAAAAAAACTCTTTTAGTCTATGATTGATAGATAAGTCTCTCCAAACTGCGGGAGCGATCCAGTAAGAACAAAAAGAATGAAGAAAAATGTCTGAAT | |||||||||
gi|169060137|gb|FE468123.1|FE468123 CAOS25497.rev CAOS Selaginella moellendorffii mixed tissues; whole juvenile plants with root CTTGGATTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): TCAAAGTATTCGATTCTGCCGGAAACTCAGGGGAGTTTCTTTCAATCCGATATTGATCTTAACGACCTCTTAGACCGTCCAGACATGTTCCTCGGCCAGAAGGCGCTCACTCCTGCCGTGAGCTTGGACATGAGCGGATGGAAAGAAGTTCTGCGAAGTTATCGAGAGAATCCAACGAATGGCCCCGTCAAGCCAGAGGACGAGACGTTAGAGCAGCGTACTACCAGGGATGCATTCCTGGAACAAGCCTCGCCCATAAAGTTTGAGGATGGAATGTTCAAGTTATCACCAAGAGCGAGTCTAAGTCCTAAAGCGATCATGGAAGTCTTATCTCCTCGGGGTCTGGGTCGCCAACCTCAGACACATTTCGAGGCTCAGCTGCGTGCTGCCACCGCTGAGAACGCCATGAAAACAGCACAAAGCCTCTCTCCGACAAAACGTGTTTCCTCTCCTCCGCCTGCGCAAAACGTCCTTGTGGATATGGGGCGTGCTTCTCAACAGGAGGGCAGAATCAAGCAACTGGCTAGTTTTGCACGATGGGCGCTCGAGCCCGCGCCCGCGGGCTGGAGCTCAGTTTGCCTCCTTCCAACGAAGAAACCAAGGTTCTCGTCTCCGGGACCGCTGGACGTGGGTAAGTGAGGCACCACGAGGTCGTTTGATAAACAAACAAGCCTGGCTGCGAGATTGGTGATGTGGGATTGCCAAAGGCGTGTAGCGTTATAATTTAAGAAAATCTAAAACAGTTTAGTTC | |||||||||
gi|169069751|gb|FE477065.1|FE477065 CAOS6236.rev CAOS Selaginella moellendorffii mixed tissues; whole juvenile plants with roots CTTGGATTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): GCTCCGGGACGCCTTCCCAACCCTGAAGCAGCAATGCAGGGATTTCGGGTTGACGGGCAACTTCCATTCCCGGGAGATGATGGGGGTTTTCCAGCGCCAATTCCCAGGCCCTTGGTGGAATTCGTTTTGGAGCAAATAAGGGACGTTTTTTTGGGGAGGGATGGATTCCCTTAAGCTTGGAATTGTTTTGCCTTTTTTTCAAGCCAACCCAATGTTTGGGGGGGGTTTTTTTCAAGCCAAGGAG | |||||||||
gi|169061088|gb|FE470094.1|FE470094 CAOS2709.fwd CAOS Selaginella moellendorffii mixed tissues; whole juvenile plants with roots CTTGGATTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): CCGCAAGCTCAAGAGCCTCGAGAGCTTGATACACAAGAGCCAGGAGTTAGCCAAGGATTCGGATGGAAACGCTCCAAACCCGGTGATCCACGCGGTTCACGAGCTGGAGAAGCAGAAGAAGAAGATGGAGGAGAGCCCGGGGATGGAGCTGGACGATCGAACCAAGCGGTTCCGCCAGGCAATCTTCAAAGCCAGCTACAAGCAGCGGCGGCGAGCGGTAGCTCCCTGTAGAAACGGTGGCAGCGGCGGTGGAAACTCTGATTCTTCCCACAACGATGGATCCACCGAGCAGCAAGAGCAGCAGCAGTGAAAAAATTCAGGGGCTCCCTTTAGTCCAAAGGCGACCATTTTGTGACCATTTTTTCTCTTGTTTTTCCTCCCCTTCAAGCTAACAGCAGCAAAGCTTTGGAATTTCGCAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|169078449|gb|FE488324.1|FE488324 CAOT2883.fwd CAOT Selaginella moellendorffii mixed tissues; whole juvenile plants with roots CTTGGATTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): GAGAGGCTTGAGTTTGAGATGGCGACTGTTCGCGGGGTACCGCAGCAAGACTTCGACATGGGGCAAATCGTCCAGGAAGCTTGCGCACGATGGCTCAAACCACCCGAAGTTTGTGACATACTTCGCAATTATCAGAGATACGGTTTCGATCTCAACCCTGTTCCTCCTAGCAGGCCTGCCAGTGGATCCTTCAACTTGTTTGATCGCAAGGCTTTGAAATACTTTCAGAAGGATGGCCACAACTGGAGGAAAAAGAAAGACGGCAAGGCTGTTCGCGAGGCTCACGAGCGGCTCAAGTCTGGGAGCATTGACGTGCTGCATTGTTACTGCGCCCGTGGAGAGGAGGATCCGAATTTTCAACGGAGCTACTGGATGCTGGAAGGTGCTTATGAACACATTGTTCTTGTTCAGTACCTTCAAGTACACCAGGGTCGTAAATCTGCATATAGAGCTCCAGAGCATCTGGAACCTCACGCAGAGTCACCCTCAATATTATCCTCGGAGCATGGCGATTCAAGTGACGATGTTGAGCAACTCTCCTCAAAGTATTCGATTCTGCCGGAAACTCAGGGGAGTTTCTTTCAATCCGATATTGATCTTAACGACCTCTTAGACCGTCCAGACATGTTCCTCGGCCAGAAGGCGCTCACTCCTGCCGTGAGCTTGGACATGAGCGGATGGAAAGAAGTTCTGCGAAGTTATCGAGAGAATCCAACGAATGGCCCCGTCAAGCCAGAGGACGAGACGTTAGAGCAGCGTACTACCAGGGATGCATTCCTGGAACAAGCCCTCGCCATAAAGTTTGAGGATGGA | |||||||||
gi|169115100|gb|FE516673.1|FE516673 CAOX708.rev CAOX Selaginella moellendorffii mixed tissues; whole juvenile plants with roots CTTGGATTGAAGGGAGCTCCC EST sequence (targeted fragment marked with yellow): GGAGAGCGATAAGTTCAATCTCTCCTTCTGGAAGCACTTGGCGTTTGGAGTGCCATCCACATTCATCGTCATCGCGGTCGGGCTCCCTNTGATCCAAGGCTGACGAGATGGTGTCAGTGGTCATATCATCGGATATCGGTTGATCGATCGATCACTACTCCGTGGAAAAGGAATCGCGGGGAAGTCTTGGTTTGATCGATTGATGGAGATGGACCAAGAAATCAACCAAGTCCACAAG | |||||||||