| mature miRNA: CTTGGATTGAAGGGAGCTCT species: Brachypodium distachyon database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|270453653|gb|GT836064.1|GT836064 CCYO16607.b1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cD CTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GGTTCATTGCGCCTGCTGCAGATGGTGGCCAGTTTAGAAGTGATTTCTGCAGGGCTCCAGTTATTTCCACATCACCCACCATGGTGTTTCACTCTCCTGCATATCAATATGCAGGATTTCCTTTCACTCCAAGTGTTCACCTTCCAACTACAGGGTTTCCCATGGGATCTACATCATATGCCAATGCTGCACCTGCAGGAGTTCCATATTTTCCAACCATTGTTCCATCACATGTTGGGTCAACAGGTGTTTTACCTGTCCAGCATGCAAGGCAGTATGCAATGAACCTTACTGAAGGTACCAGCAGGGATGGACATGACAGCAATTGGAAATGGAGAAGACAGGGGCTTGATCTTAATTCTGGCCCTGGAAGTATAGATGTAGAAGGGAAGGATGAACGATTAGCTTTATTGAGCAGACCAAATGTGGTGACACCTCCACCAGCCTTTGTGGAGGAGCAAACAAGAATGTACCAAATGCCAGGTGTAGGAATAAAGAGGAAGGAACCTGAAGGTAGTTGGGATGCTGAAAGATCATCGTCATACAAGCAATTATCATGGCAGTAAGATCCTTAAGGAGATCTCACAGTGACATCAGTGTCTTGTGAACTTTGGCAAATGCATGTGGAAGTCAGGCATTGTTTCACACCCCGTGTCCGTGCTAGGATATACAACTCACTGATTGATTCATCCCTGTGATTATGTGAATTGTGAGAGGAATGGAATTCTGCTGTAATTGCTGTAAATGTTA | |||||||||
gi|270393162|gb|GT775041.1|GT775041 CCXF11011.b1 CCXF Brachypodium distachyon abiotic + biotic stress pool Brachypodium distachy CTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): ACTATCAAAGATCCCAAGAAGGTCTTAGTTATTGGAGGTGGAGATGGTGGTGTTCAGCGTGAGGTTTCACGATATTCCTCAGTGGAACAAATTGACATATGTGAGATTGATAAGATGGTGGTGGATGTCTCCAAACAATTTTTCCCTCATCTGGCTCTTGGATTTGAAGATTCTCGTGTGTCCTTGCACATTGGAGATGGTGTTGCCTTTTTGAAAAATGCCCCGGAGGGTACCTACGATGCCGTGATTGTTGATTCCTCTGATCCAATAGGTCCTGCTCAAGAGCTTTTCGAGAAGCCTTTCTTCCAGTCTGTTTCCAGAGCTTTGCGCCCAGGTGGAGTTGTCTGTACTCAAGCGGAGAGCATATGGCTGCATATGCACATCATTGAAGATGTTGTTACCAACTGTCGACAAGTTTTTAAAGGCTCAGTTAACTATGCTTGGACAACAGTACCGACATACCCTAGTGGAGTGATCGGTTTCATGCTTTGCTCCACGGAGGGACCACCTGTTGATTTCCAGCATCCAGTTTTCAACATTGAGGAGGATGATTATTCTACAAAATCGAAAGGACCGCTCAAGTTCTACAACTCTGAGATCCATTCAGCATCATTTTGTTTGCCATCTTTCGCGAAAGGGTCATTGAGTCCAAGTCTAACTGAAGAGGGTCGCTGGTCAAAAGGCCCCGACCAGACGTGAAGAGGGTCCTTGAATCCAAGGTTCGAGTCCCCTTAGACAAGACA | |||||||||
gi|270410234|gb|GT793861.1|GT793861 CCXG659.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG659 CTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): ATGATGAGGATCTTTTAAAGATCCTTGACCTTCCCGGTACTGTAGTGCTAGACGAAGCATATGTTGAATTTTCAAGCCTAAAATCAAGGATGACATGGGTTAAGAAGCATGATAATTTGATTGTCCTCCGAACATTTAGCAAACGAGCAGGTTTAGCTGGGCTTCGTGTGGGCTATGGAGCATTTCCTCTAAGCATTATTGAGTACTTATGGCGGGCCAAGCAGCCCTATAATGTTTCTGTGGCAGCAGAAGTTTCCGCATGTGCTGCCTTGCAAAACCCCACCTATTTGGAGAGCGTGAAGAATCTGCTACTACAGGAGAGGGAGAGGTTGTATAATCTTCTCAAAGGAGTACCTTTCCTGAAGCCATTTCCCAGTCATGCAAACTTCATTATCTGTGAAGTCACATCAGGAAAAGATGCAAAGAAAATAAAGGAAGACCTTGCGAAGATGGGAGTGATGATCCGCCACTATGACAAAAAGGAACTGAAGGGGTATATTCGTATTTCAGTTGGAAAGCCCGAGCACACTGATGCACTAATGGAAGGACTCAAGGCACTTGAACTATGAGAACTCGCTTCGATGGAAACACTGAAGAACTTCACGAGTACCTGCGTGCCCATTGCTAGGCTTGTGTACAGTAGGTGCGGTCTATCAGGTAGAGATTAGCTTCCAAAAAAAGAAGTAGAGATTGCTTCAATCCAAATCAGTAAGATTCCAAACCAACTAGGATCGATTAGTTTCCAATAAAACGTCTACTCTTAAGTACTTACTGCTGACTTTTTGGCCATACAATTTTAGCAAAGTTATTGTTC | |||||||||
gi|270474177|gb|GT856503.1|GT856503 CCYP11583.g1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA c CTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): TCAAGAGCTTTCGAGAAGCCTTTCTTCCAGTCTGTTTCCAGAGCTTTGCGCCCAGGTGGAGTTGTCTGTACTCAAGCGGAGAGCATATGGCTGCATATGCACATCATTGAAGATATTGTTACCAACTGTCGACAAGTTTTTAAAGGCTCAGTTAACTATGCTTGGACAACAGTACCGACATACCCTAGTGGAGTGATCGGTTTCATGCTTTGCTCCACGGAGGGACCACCTGTTGATTTCCAGCATCCAGTTTTCAACATTGAGGAGGATGATTATTCTACAAAATCGAAAGGACCGCTCAAGTTCTACAACTCTGAGATCCATTCAGCATCATTTTGTTTGCCATCTTTCGCGAAAAGGGTCATTGAGTCCAAGTCTAACTGAAGAGGGTCGCTGGTCAAAAGGCCCCGACCAGACGTGAAGAGGGTCCTTGAATCCAAGGTTCGAGTCCCCTTAGACAAGACAAAAAGTTGGTTGTAGCATAAACAAGGGATGGCCTCCCTATTTTAGCTTTAAATAAGCATCACAGATACGCAGTTACCGAAATTATCTATCCTCAGTTTTACTTCTCTGGTTGTATTTCCTCTGTATTTGGTATCTGCTTTTCCCGCACTTCTCTGATCATTTCGAACGTGTTTTGCATGATCTGGAAGCGATCGCCTGGTGCTCTTCCTAAGGTGGAACGACATGTGATCGTTTAAGT | |||||||||
gi|270452320|gb|GT833487.1|GT833487 CCYO14790.g1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cD CTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GAGAGCATATGGCTGCATATGCACATCATTGAAGATATTGTTACCAACTGTCGACAAGTTTTTAAAGGCTCAGTTAACTATGCTTGGACAACAGTACCGACATACCCTAGTGGAGTGATCGGTTTCATGCTTTGCTCCACGGAGGGACCACCTGTTGATTTCCAGCATCCAGTTTTCAACATTGAGGAGGATGATTATTCTACAAAATCGAAAGGACCGCTCAAGTTCTACAACTCTGAGATCCATTCAGCATCATTTTGTTTGCCATCTTTCGCGAAAAGGGTCATTGAGTCCAAGTCTAACTGAAGAGGGTCGCTGGTCAAAAGGCCCCGACCAGACGTGAAGAGGGTCCTTGAATCCAAGGTTCGAGTCCCCTTTGACAAGACAAAAAGTTGGTTGCAGCATAAACAAGGGATGGCCTCCCTATTTTAGCTTTAAATAAGCATCACAGATACGCAGTTACCGAAATTATCTATCCTCAGTTTTACTTCTCG | |||||||||
gi|270422706|gb|GT805891.1|GT805891 CCXG13568.g1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG1 CTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): ATATGCAGATTTCCTTTCACTCCAAGTGTTCACCTTCCAACTACAGGGTTTCCATGGGATCTACATCATATGCCAATGCTGCACCTGCAGGAGTTCCATATTTTCCAACCATTGTTCCATCACATGTTGGGTCAACAGGTGTTTTACCTGTCCAGCATGCAAGGCAGTATGCAATGAACCTTACTGAAGGTACCAGCAGGGATGGACATGACAGCAATTGGAAATGGAGAAGACAGGGGCTTGATCTTAATTCTGGCCCTGGAAGTATAGATGTAGAAGGGAAGGATGAACGATTAGCTTTATTGAGCAGACCAAATGTGGTGACACCTCCACCAGCCTTTGTGGAGGAGCAAACAAGAATGTACCAAATGCCAGGTGTAGGAATAAAGAGGAAGGAACCTGAAGGTAGTTGGGATGCTGAAAGATCATCGTCATACAAGCAATTATCATGGCAGTAAGATCCTTAAGGAGATCTCACAGTGACATCAGTGTCTTGTGAACTTTGGCAAATGCATGTGGAAGTCAGGCATTGTTTCACACCCCGTGTCCGTGCTAGGACATACAACTCACTGATTGATTCATCCCTGTGATTATGTGAATTGTGAGAGGAATGGAATTCTGCTGTAATTGCTGTAAATGTTAGTCATATCCGTACTTTCCTGGAAACAGTTTTCCTCAGCTTCAGCACTTGCGTAGCTAGAGTTTTGTATCTGCCAAGGCTTTGGAGATTGAATGGTAGTGATCTTTGGCATCGC | |||||||||
gi|78000866|gb|DV469254.1|DV469254 5405_C12_E23ZR5_092 Brachypodium distachyon callus EST library Brachypodium distachyon cDNA c CTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GGAAGCTGGTCGCCTGCAGGTACCGGTCCGGAATTCCCGGGTCGACCCACGCGTCCGCCCACGCGTCCGCGTCCGGGCCTCTGGTGCTAGTGCGAGTGCCCTTCGTGTCCGAGGTTTTCCACCCAAGAGACCAACCCCCGGTGCCCTTCCCTATGGCGGCGCTGGAGCCAGAATCCAAGCAGGAGACAGGAATCCCCGCACCGTCCCGCGAGAACCCCCCGCCGCCGGAACCAGTAGCCGACGCCGGCGGCGGCCGGGTGCTGCAGCCGTGGGAGCAGCATGCTGCTGTGATCAATCTCCCGCGCTACGACTACCGCGCGTCGAGATCCCTCCTTCTCCGCTCCCACTCCGGCTTCCTCATCACCTGCCCCATCAAACGAGAGAAAAGTGCTACCAAGGAAGCCATTTCGATTCTTGGAGAGTACATTAATCCTGCAAGCAGCCATAGCTCTGAAAACTTGGAACCATGTGTTATAGAGGTTGCATCAAAGAAAAGAAAAACATGTTCCGAGGCATCAGGAATTGAAAATTCAGAAGATGCAGTAACCAATGGGAAGGATGATGCTTCAGAATCAACTGGCTGCATTGAAGTAGAAACGAGTTCACTTCACTCCAAGACTAGTGAAATTATCGACAGGACTTCAAATCTTTCGTTGGTCAAGCTAGCAAGAAGTGGCTTGCTTTTCTTTTCTTTCACTAGTGGAGGCCTTCATGTTGTTCAGATGCTTACTGAAGTGTTTCATTCACTGAGATCTGGGAAGCTTAAATCTCCACAATGGTGTCACCGCATATTCCCTATTCAGGAAACTTGTGTTCTATC | |||||||||
gi|78000877|gb|DV469265.1|DV469265 5405_D12_G23ZR5_090 Brachypodium distachyon callus EST library Brachypodium distachyon cDNA c CTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GGAAGCTGGTACGCCTGCAGGTACCGGTCCGGAATTCCCGGGTCGACCCACGCGTCCGCCCACGCGTCCGCGTCCGGGCCTCTGGTGCTAGTGCGAGTGCCCTTCGTGTCCGAGGTTTTCCACCCAAGAGACCAACCCCCGGTGCCCTTCCCTATGGCGGCGCTGGAGCCAGAATCCAAGCAGGAGACAGGAATCCCCGCACCGTCCCGCGAGAACCCCCCGCCGCCGGAACCAGTATCCGACGCCGGCGGCGGCCGGGTGCTGCAGCCGTGGGAGCAGCATGCTGCTGTGATCAATCTCCCGCGCTACGACTACCGCGCGTCGAGATCCCTCCTTCTCCGCTCCCACTCCGGCTTCCTCATCACCTGCCCCATCAAACGAGAGAAAAGTGCTACCAAGGAAGCCATTTCGATTCTTGGAGAGTACATTAATCCTGCAAGCAGCCATAGCTCTGAAAACTTGGAACCATGTGTTATAGAGGTTGCATCAAAGAAAAGAAAAACATGTTCCGAGGCATCAGGAATTGAAAATTCAGAAGATGCAGTAACCAATGGGAAGGATGATGCTTCAGAATCAACTGGCTGCATTGAAGTAAAAACGAGTTCACTTCACTCCAAGACTAGTGAAATTATCGACAGGACTTCAAATCTTTCGTTGGTCAAGCTAACAAGAAGTGGCTTGCTTTTCTTTTCTTTCACTAGGGGAGGCC | |||||||||
gi|78015572|gb|DV483960.1|DV483960 5352_G12_M24Z_084 Brachypodium distachyon leaf EST library Brachypodium distachyon cDNA clone CTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGGGAAGCGAGCTTTCTTCAGTTCAAGGGTTTATTGCTTACTATACTTTTCACCAAGTCAGTATTGTACGCCAACTAAAATGTGTAAAAGCAAACCGTCTTGAGTTGTTCCCTGGTCGAGGGGACACCATGTATGGTCCCATTAAATCAAGATAAACAGCCTGAGGTAACTAAGGCTTAACTTACCTGCTGTAGATACAGGACCCTACTTTGTAGCTGAACATGAGAATCATCGCCGAAACGAAGAAAAGGTACAAGCCACCACGCAGCACCATTGGGACCGTGCTCAGCTGTGTAGCTGGCTCGTCAAAACCAACGGATTTGGTAGACACATCGCTCTCCACTGTGAAGGAAAGGAGTAGACTGAAGTCTCCATTCTTCTGCAGGGGCCAGTGTTCGGAGCTACCACTGAAAGTGAGGCCACCAAGCTGGACGATGCCAGCAGTGACATGAATCGAACTAGGCCCATTGACAGCAGAAAGCGAGGCAACA | |||||||||
gi|270389460|gb|GT768883.1|GT768883 CCXF7270.g1 CCXF Brachypodium distachyon abiotic + biotic stress pool Brachypodium distachyo CTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): CGAACATTTAGCAAACGAGCAGGTTTAGCTGGGCTTCGTGTGGGCTATGGAGCATTTCCTCTAAGCATTATTGAGTACTTATGGCGGGCCAAGCAGCCCTATAATGTTTCTGTGGCAGCAGAAGTTTCCGCATGTGCCGCCTTGCAAAACCCCACCTATTTGGAGAGCGTGAAGAATCTGCTACTACAGGAGAGGGAGAGGTTGTATAATCTTCTCAAAGGAGTACCTTTCCTGAAGCCATTTCCCAGTCATGCAAACTTCATTATCTGTGAAGTCACATCAGGAAAAGATGCAAAGAAAATAAAGGAAGACCTTGCGAAGATGGGAGTGATGATCCGCCACTATGACAAAAAGGAACTGAAGGGGTATATTCGTATTTCAGTTGGAAAGCCCGAGCACACTGATGCACTAATGGAAGGACTCAAGGCACTTGAACTATGAGAACTCGCTTCGATGGAAACACTGAAGAACTTCACGAGTACCTGCGTGCCCATTGCTAGGCTTGTGTACAGTAGGTGCGGTCTATCAGGTAGAGATTAGCTTCCAAAAAAAAGAAGTAGAGATTGCTTCAATCCAAATCAGTAAGATTCCAAACCAACTAGGATCAATTAGTTTCCAATAAAACGTCTACTCTTAAGTACTTACTGCTGACTTTTTGGCCATACAATTTTAGCAAAGTTATTGTGC | |||||||||
gi|270437144|gb|GT816707.1|GT816707 CCYO3728.b1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cDN CTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GAGCCTTTCTTCCAGTCTGTTTCCAGAGCTTTGCGCCCAGGTGGAGTTGTCTGTACTCAAGCGGAGAGCATATGGCTGCATATGCACATCATTGAAGATATTGTTACCAACTGTCGACAAGTTTTTAAAGGCTCAGTTAACTATGCTTGGACAACAGTACCGACATACCCTAGTGGAGTGATCGGTTTCATGCTTTGCTCCACGGAGGGACCACCTGTTGATTTCCAGCATCCAGTTTTCAACATTGAGGAGGATGATTATTCTACAAAATCGAAAGGACCGCTCAAGTTCTACAACTCTGAGATCCATTCAGCATCATTTTGTTTGCCATCTTTCGCGAAAAGGGTCATTGAGTCCAAGTCTAACTGAAGAGGGTCGCTGGTCAAAAGGCCCCGACCAGACGTGAAGAGGGTCCTTGAATCCAAGTTCGAGTCCCCTTAGACAGACAAAAGTTGTGTAGCATAACAGG | |||||||||
gi|270480094|gb|GT862009.1|GT862009 CCYP14706.b1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA c CTTGGATTGAAGGGAGCTCT EST sequence (targeted fragment marked with yellow): GGTTAAGAAGCATGATAATTTGATTGTCCTCCGAACATTTAGCAAACGAGCAGGTGTGTGGTTTTAGTTCTGTCGTTTTAGTGCGTATAAAAGGTTATGTGTTTTTGAAGAAGAATCAAAAGGGAAGTGAATTTCTTCACAAAGTTATGATTGATACAGGTTTAGCTGGGCTTCGTGTGGGCTATGGAGCATTTCCTCTAAGCATTATTGAGTACTTATGGCGGGCCAAGCAGCCCTATAATGTTTCTGTGGCAGCAGAAGTTTCCGCATGTGCTGCCTTGCAAAACCCCACCTATTTGGAGAGTGTGAAGAATCTGCTACTACAGGAGAGGGAGAGGTTGTATAATCTTCTCAAAGGAGTACCTTTCCTGAAGCCATTTCCCAGTCATGCAAACTTCATTATCTGTGAAGTCACATCAGGAAAAGATGCAAAGAAAATAAAGGAAGACCTTGCGAAGATGGGAGTGATGATCCGCCACTATGACAAAAAGGAACTGAAGGGGTATATTCGTATTTCAGTTGGAAAGCCCGAGCACACTGATGCACTAATGGAAGGACTCAAGGCACTTGAACTATGAGAACTCGCTTCGATGGAAACACTGAAGAACTTCACGAGTACCTGCGTGCCCATTGCTAGGCTTGTGTACAGTAGGTGCGGTCTATCAGGTAGAGATTAGCTTCCAAAAAAAGAAGTAGAGATTGCTTCAATCCAAATCAGTAAGATTCCAAACCAACTAGGATCAATTAGTTTCCAATAAAACGTCTACTCTTAGTACTTACTGCTGACTTTTTGCCATACATTTAAGCA | |||||||||