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mature miRNA: CTTTCCAACACCTCTCATAC
species: Paullinia cupana var. sorbilis
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|196462883|gb|EC764900.1|EC764900 EST 1396 Guarana fruits cDNA library Paullinia cupana var. sorbilis cDNA, mRNA sequence

CTTTCCAACACCTCTCATAC
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GAAAGGTTGTGGAAAAGATG

EST sequence (targeted fragment marked with yellow):
CAAAAAGCAGGCTGGTACGGTCCGGAATCCCGGGATATCGTCGACCCACGCGTCCGGGCTGTTTTCCTGGACTGCAGGGGTCACACAACACACAATTGCCGGTTTACATTGCTTTGAAACAGGCCACAACTCCAATACAAGCCTATCAAGAGCAAGTTCTCAGTAACTGCACAAAATTTGGAGAGACACTAGCCAAGCACGGGTATGAACTTGTCTCAGGAGGAACTGAGAACCATCTAGTACTGGTCAATTTGAAGAACAAGGGTATTGATGGCTCTAGAGTAGAAAAGGTGTTGGAAAGCTGTTCATATTGCAGCCAACAAAAATAACTGTTCCTGGAGAAGGTTTCCTGGCCATGGTTCCTGGTGGCATTAGGATGGGAACCCCGTGCTCTTACTTCAAGAGGATTTGTTGAGGAGGATTTTGCCAAGGTAGCTTTCTTCTTTGATGCAGCAGTGAACTTGGCTGTGAAGATCAAGTCTGAAACAAAAGGAACAAAGTTGAAAGACTTTATCACCACAATGCAATCTTCTCACTTCCAATCTGATATTG