miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: CTTTCCAACGCCTCCCATGCC
species: Picea glauca
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|225918291|gb|GO370745.1|GO370745 GQ04011.SP6P1_H03 GQ040 - Shoot tip - Active growth (Normalized) Picea glauca cDNA clone GQ0 

CTTTCCAACGCCTCCCATGCC
||| |||||||||||| ||||
GAACGGTTGCGGAGGGAACGG

EST sequence (targeted fragment marked with yellow):
AAGAACCAGAAGGCAGCGATGGACGGCTCGGAGCATTCTGCAGTGGAACAGAAGACCCCAGTTAGCTGGCGAAACCCCCAGAATCGTGGTCATCACATCGGGCAAGGGAGGCGTTGGCAAGACCACGACAACGGCGAACATAGGGTTAGCCCTCGCGAGGCTGGAATTCAAAGTGGTAGCCATCGATGCAGACGTCGGGCTTCGAAACCTGGACCTCCTTCTGGGCCTCGAGAACAGAGTCAACTACACAGCCATGGAGGTCTTAAACGGTGAGTGCCGCCTTGACCAGGCTTTAATTAGGGATAAAAGATGGGCTAATTTCGAGCTTCTTTGCATTAACAAACCTAGGTATAAGATGCCCCTAGGGTTTGGGGGGAAGGCACTGGTATGGCTGGTGGATGCCCTAAAATCTAGGCCTGAAGGGTCACCTGATTTTGTGCTTATAGACTGCCCTGCTGGCATTGATGCTGGTTTCATAACTGCAATTACCCCTGCCAATGAGGCCATCCTTGTAACCACCCCTGATATAACCAGTCTCCGCGATGCCGATCGAGTGACAGGTCTTTTGGAATGTGATGGCATTAGGGATATCAAGATGGTCGTGAACAGGGTCAGAAGTGATATGATAAAGGGGGAGGATATGATGTCTGTGCTTGATGTTCAAGAGATGTTGGGGTTGTCCTTGTTGGGTGTGATTCCTGAGGATGCCGAGGTGATTAGGAGTACTAATAGGGGATACCCACTTGTTCTGAATAGGCCACCTACGTTGGCAGGGCTCGCATTGGAACAGGCTGCTTGGAGGCTGGTAGAACAGGATAGCATGAAGGCAGTGTTGG


gi|238891134|gb|GR222626.1|GR222626 GQ03222.SP6.r_P15 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03222_P15 

CTTTCCAACGCCTCCCATGCC
 || ||||||||.|||||.||
AAACGGTTGCGGGGGGTATGG

EST sequence (targeted fragment marked with yellow):
GCATTGGTGAAAAAGTGCAAGAATCCCGGCCGTTACAATGTATTCCAGAACCTCAGATATGCTTTTCAAATTCACCAGCTGGAGAAGGAGATTACTGACTTCGTTCGGTACCAGATGCCTGTCAATTTAAGTCTGGATGTTAAGAACTTCATAGAAGAGCTGAAGAATTTTCGCCAACTGTGCGAAAAGGGGTCAGTGGATGAGAGAAAGGTAAATGAAGCAATCGTGCCCAAGCTCACCAATGATCCTCAGAAGAATGCTGTGATGTTACAACAAATAGGCTCGGATGATATGTTTGATGGAGTTTTGGATGAAGCTCCTCCCTCACCAAAGTTTGATTTTGTCGTGGGGTTGGAGATGAATATTTCGAATGTGAAGAGAATTTTGCTCGACAGAGATGTGTCTGTCGTTGGGGTCGATGGTATGGGGGGCGTTGGCAAAACAACTATGGCAATGGCACTTTCCGATGATCAAGAAATTAAAGGTGACTAGGGTTTTCATTTATTCAAACAATTTTTATGACCCGAGGGATACTCTTTTCGCTCTTTGGTGCCCGGGTCGTTACTGAAAAGCCTTACCTCCTGTTTATTTTGCCCCTCCTTCCTTTTGACTGATGTAATATTTAGTTTAAGTAGTCATGTTGATCATATTGTATTTAGCAATATGCTGCCGCACCCCCACCACAGATTGATGTCGCTGATTGTGATTTTTAGTTTCATAAACTTTTCTTTTGGTCATTTTTTTGGACATAATTAAAATTATCTCATCTGAAAAAA


gi|211886413|gb|CO477771.2|CO477771 GQ0133.B7.1_J21 GQ013: Elongating ROOTS tips - saplings Picea glauca cDNA clone GQ0133_J21 3 

CTTTCCAACGCCTCCCATGCC
||||||||||||| |  .|||
GAAAGGTTGCGGAAGCGGCGG

EST sequence (targeted fragment marked with yellow):
AAGATGGCAGGCGTTGCAACATACGATATGATAAGTTTGTGACGGATGATGGAAAGCCATTTGAGGAGGCGGCGTTGCTGCACAGTGAAGTGAGACCCATTCCTCCTCACATTCAGTTGCCTCTCCATTGCTCTGTTGGCGACGCAGTGGAAGCTTATGACACCGACTGCTGGTGGCGCGGCTTCATTGTCAAACTGCTTACAGGCGCAGAAGAGGAGCTTTGGGTGGTCTACTTTCCTGACACTCGCACTCTCGAGGCATATCCCCGTTCAAGCTTACGCCCCGCTCAGCAATGGATCCGAGGAAACTGGATCATGGTGCCTCAGGAAAGAAGCCCGATCATAGAGCAAGAAATCCTGTCTTTTAGCGTGGACAATTCGATGGAAATGCCTCTGAAATCAGGCGGCGAAGGCGTTGGAAAGAAAAGGAGGCAGGCTGTTAAGTGCAAAGCAGCTTCTCTTGGCGGAAGAGATTCGGCTAAAACGAAAAAGTTGAAGGTAGCTGTGAACACTACAGTGTCTCGGCGACAAACTGCAGAAGGCTCGGACACAAATGGGGCTTAATTCGATATTTCGGACCAGACAGACTTTAAATTCAATTTTTTTTATCGATGATTAGATCACGCTGCCTTTTTATTTTCTATAGAATTTCAAAAGTGAATAGATTCTGTACTGGTTGAAATTCAGTCTTTTCTGACTTTGAGATTAAATGTTGTAAAACAGTATATAAATTTTGAAATGCTGGATGAAGTGATATTGTCTACAAAAAA