| mature miRNA: CTTTCTTCTACTTCTTCCAAG species: Solanum tuberosum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|160518762|gb|AM907756.1|AM907756 AM907756 Solanum tuberosum cv. Yungay leaf adult Solanum tuberosum cDNA clone 1P24, mRNA seq CTTTCTTCTACTTCTTCCAAG EST sequence (targeted fragment marked with yellow): ATCAGGCAGAGGACGAGACAGAACGCAGAAAATTTTTATCTCTTTTGCCATGGAATCCTAAGCATCTTCTTCTTATTCGTTAAACCACGCAGGAGCAAAGCACTTGTATCCAATTTTTTGCTCATGTCGTCATCTTTATTGATGAAACAGAGGAACTGATAGACGCCCTAAACTAACCCGTAACTCCAAATAAGCGAAGAAGGGGAAAGGGGAATTTTATTTTCCATTTGATTCACACTTGAAGTATCATTCTCCTATCACCATGCTCAGATTGAGCACCAAGTTTCAGGTCTTCTTTCTGGGAATTAGGAAATCAAATTTGGAGAAAGCGACCATTAATAATTTTTCTACGGTAAATTCAAACATCAAAACATCAGATTGAGCACCAAGTTTCAGGTTCTTGGTATCGATCTGTCCTGGAGAATGCACAGATCATCTGATGGGCAAAGAAGAAGAGTGTAGATATGTATGGGTCTTCTGAAACTATTCAAGTTGCTGAACTTTCAAAACTTCCCATACCAACATCCTCTCAGCACATTAAAGGTGAATAAAGGAAGAGGTAGAAGAAAGAAATGAAGACCTTCAAAGTATTAGCTGAACAGTGTGGCCTTTAAATTTTCTAGTTTTTATGAATTGTGTATGCCACTATTGAACATGTCAAACAAATTTGTATATCTGCTTTATATATGGATAATAC | |||||||||
gi|160518556|gb|AM906498.1|AM906498 AM906498 Solanum tuberosum cv. Yungay leaf adult Solanum tuberosum cDNA clone 5E1, mRNA sequ CTTTCTTCTACTTCTTCCAAG EST sequence (targeted fragment marked with yellow): ATCAGGCAGAGGACGAGACAGAACGCAGAAAACTTTGCTGGATACGCTTGATCGAGCTGGCTGTCCTCAGTTCAAGCGCTCAGAGAGCTCGCCATCAGTCTACGCAAGCGTCGAGGCGGCGGTAGAGGCAGCAGCACCGATAAGCGCTCTGTGTTGAACTGGCTACGCAGCTTGAGTGGCGCAGAGCTGGCGTCTCTTCGCTGCGTGGAGGACGTAGGTTTCGTCAAGACGCTGCTGCACATGGCTGCGTGTTCCAGAGCTTCAGTAGGAGGTGCGTCCAGAATAAGCGCGTAGCAGCCAAGACGCCTCCCAGATCCGCTGCAAGGGCGTTTGTGAAGCGACCAGTGGTGCGTACGAAATATGGAGATATAGTGGGAAGTTTCCATACTCAGGAGTATGAGGAAGGCAGCAAGAAGGTGGTGATAGGCATGAGTGTGCTTAATACGCTGCAGTCGTGCGATACGGTGGCTCTATCGATGGAGTTTTTATCCAAGAAGGAAGGAGATGTTTCTGTTGAGTTTGTACAGTTGATGGAAGTGATTTCCAAGGGTGGATTTCTGATGGAATGTCCGGAGGATGTTACGTTGAAGCATGAGACAAAGTGGCTTAAGGAGCAAGGACATTGTTCATTACAAGCTCTGTTCATGAATGAAATTCTCAATATTTGGGCATTTTGAAAGCAGTATAAGAAAGACGTGAGCGTGAAGATTCCTATGCAGGGGATCGCGTCTAAGTTTATTTTGTGCGCGAGTGGGAGGTGGCAAGGGTGAGACAGAAAACTGAAGCGTTGAAAGTGTTGCGTGATAGACGTTTTCGCACATTTGC | |||||||||
gi|160517893|gb|AM906645.1|AM906645 AM906645 Solanum tuberosum cv. Yungay leaf adult Solanum tuberosum cDNA clone 5O9, mRNA sequ CTTTCTTCTACTTCTTCCAAG EST sequence (targeted fragment marked with yellow): ATCAGGCAGAGGACGAGACAGAACGCAGAAAAGTTCAAGTGCTCGGAGAGCTCGCCGTCAGTCTGCGCAAGCGTCGAGGCGGCGGTAGAGACAGCAGCGCCGACAAGCGCTCTGTGTTGAATTGGCTTCGCAGCTTGAGTAGCGCAGAGCTGGCGTCAAGACGCTGCTGCACATGGCTGCGTGTTTTAGAGCTTCAGTAGGAGGTGTATTAGCGCGTAGCAGCCAAGACGCCTCCCAGATCCGCTGCAAGGCGTTTGTGAAGCGACCAGTGGTGCGTACGAAAGATGGAGATATAGTGGGAAGTTTCCATACTCAGGAGTATAAGGAAGGCAGCAAGAAGGTGCTGAGAGGCATGAGAGTGCTTAATACGCTGCAGTCGTGCGAAACGGTGGCTCTATCGATGAAGTTTTTATCCAAGAAGGAAGGAGATGTTTCTGTTGAGTTTGTACAGTTGATGGAAGTGATTTCCAAGGGTGGATTTCTGATGGAATGTCCGGAGGATGTTACGTTGAAGCGTGAGACAAAGTGGCTTAAGGAGCAAGGACATTATTCATTACAAGCTCTGTTCATGAATGAAATTCTCAATATTTGGGCATTTTGGAAGCAGTATAAGAAAGACGTGAGCGTGAAGATTCCTATGCAGGGGATCGCGTCTAAGTTTTATTTCGTGCGCGAGTGGGAGGCGGCAAGGGTGAGACAGAAAACTGAAGCGTTGAAAGTGTTGCGTGATAAGACGTTTTCGCACAATTGCGACCTGGAGAAGTCAATGCCGAGTAATTCTTCTGCAGT | |||||||||
gi|66839224|gb|DR037329.1|DR037329 49026.2 Late Blight-Challenged Tubers Solanum tuberosum cDNA clone 49026 5', mRNA sequence CTTTCTTCTACTTCTTCCAAG EST sequence (targeted fragment marked with yellow): CTCGAGTGTTTTACTTCAACTGATGACTCAAGTTTTCAAGTAGACCCATCGCATGCTGAAGTGGTGAAGAGAGCCATTGCTGAAAATCGTTCTGCAGTTAATGGCGGTTTCCTGCTGAAATTACCGTTTACCACAATTTTTGAATATTTACAGATTCTTCGGATGATAGCTGTCTCTTTAAGGAGCCTTGGTCCTAGTGCTATGTTCTATCTTGCAGCTGCAGTTTCTGATTTCTATGTACCGTGGGAGAGCATGACAATGCATAAGATCCAGTCAGGATCTGGTCCTTTGGACATGCGGCTTGCTCAAGTACCGAAGATGCTTTATGTGCTTAGAAATGAGTGGGCACCTGTGGCTTTCTGCATATCTTTCAAGCTGGAGACAGATACAGATATCCTTTTAGGGAAGGCTGATATGGCCCTCAAAAAGTACAAGATGCATATGGTGGTAGCTAATGAACTTCAAACTCGTAAAGAGGAAGTTATAGTTGTCACAGAGCAGGAAAAAATCACAGTTCGTAGAGACACAACTCAGCCTGGGGCTGATGTCGAAGATCCATTGATTAAGCTTGTTGTGCACAGACATTCAGCATACATCGATGCATGATATCTTGAGGACTGACCAACGATAGTTTTGCGGATTTCTGAAACCTGACTTCTTTGAGGATTGTATTACATCTGTGCAAAATTATGTAACCAGCAATTTTAAAGGAAGATAAACCCTTCCAACCCCATTAACCAATTACCACAGGCTCTCTTGAAAGAAGTAAAAGAAAGAGGGTGGCTTTTAGTTTGGTCCCAATTGGATGCAGGTCTTTTNCACGGTGAGTGGATTGGTTATCCTTGGTTCAGAACGAACATACAGTTTTCGGTGCCACGAAAAAAAAGGCGGCCTGAATTATATTTAAGTAAGGATTATTGCTCTTTCCAAAAAAACGACAACACAC | |||||||||
gi|78750965|gb|DV627368.1|DV627368 97982.1 Cold Sweetening C Solanum tuberosum cDNA clone 97982 5', mRNA sequence CTTTCTTCTACTTCTTCCAAG EST sequence (targeted fragment marked with yellow): GTCACTCAAAAAGCACCCATCAACAANAAATATTCCCCAATTGCCGGCGGCACACGTTAGTGAGATCGGAGTATACGATGGCCGATCACGCCGGCGAGCACGAATCAGTCGTTGAAATCCCGTCATGGAAAAGATCAACGACAAGTTTGCACGACCCACGATTCCTTTCCTTCCATTCGGGAATTTCTTGAAAGGAATTGAACCAAAGGGAAGAAACAATATTCGGTTCGGGTTCGGAATTGCCCGTTCTAAGGCCAAAAGAATTCTTATTCGGCTCTTCTTTTGGCCAGGGGAAAAGGGCCCGCTACATAAGGTTTCTCGGCGGTGGAAAACCTGCGGACATTTTTCTGTGGAGGGACAAGAAAATTACTGCCGGTGTGCTTGGGTTTGCCACTTCACTTTGGGTGCTTTTTGAGTTGCTTCAGTACCATTTGCTTACACTTGTTTGCCATATACTGATCCTTGCATTGGCAGTCCTTTTCCTTTGGTCCAATGCATCCACCTTCATCAACAAGTCTCCACCCCAAATTCCAGATGTCATTCTGCCTGAGGACATTGTCCTGGGTGTTGCTGCTGCACTCAGGATTGAAATAAACAAAGCTCTTGAAATTTTTCGGGATATTGCCTCTGGGAAGGAGTTGAAGAAATTCCTCGCTGTTATTGCTGGTTTGTGGGTTCTTTCTATATTGGGCAACTGCTGGAACTTCCTCACTCTATTTTACATATGCTTTGTATTGCTCCATACCGTCCCTGTTACTTTATGAGAAATTTGAGGACCCAGTTGATGCTTTTTGCTGAGAAGGCTGAGCGCAGAGATCAAAAAGCAGTATGCTGTTTTTAACGTCAAGGCTCTAAGCAAA | |||||||||
gi|115276708|gb|EG014944.1|EG014944 SDBN001O14u SDBN Solanum tuberosum cDNA clone SDBN001O14, mRNA sequence CTTTCTTCTACTTCTTCCAAG EST sequence (targeted fragment marked with yellow): GCTGCTCGAGCGGCGCTCGGGAAGATAGCTAAGAGGAAGTCACGTGCTTTAAGGCGTAATACGACTACGTATATAACTGCTGATGTGGATAATTTCCGGGAAATGGTGCAGCAGGTGACCGGCGTTAGCTTCGGCGGCGGTGACGGACAGCTGCCGGTTGCTCATGTTCTGAAACCTGAACCTCAGCGTGTTGTTAACCGGCTACAGCCTGGTTGCTTCTTGCCAACTCTTGACACGTCAGCTTTTTTGTTGGACCACGTCACTCAACAATCAATGGAACCTATGCTGGTACAACAGCAGACGGCGGCGGATGTGGTGGTTGATGGCGGCTCATGTGGATTTGATTTTAGCTCTTTTTCTGCCTTTCCTACCCTTGAGTCATTCATGGAAAACAGCAATGTAGTTTAATGCAACAGACCCTTTCTGTAATTTCACTTGGAGGGTGTAGATTTTTGGAGAAGTAGAGGAGAGGGTAAAATGGG | |||||||||