| mature miRNA: GAAATCTTGTTGATGCTGCCA species: Centaurea solstitialis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|124677715|gb|EH772455.1|EH772455 CNSM498.b2_D05.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSM498, mR GAAATCTTGTTGATGCTGCCA EST sequence (targeted fragment marked with yellow): TGGCGGGGATGCTTGAAGTTTACAGGTTTCGAAAGAAGAGAAACGCCATAGTCATCTTCCAAACCAAACCCTAGACCTCTGATCGCTTCTCTATTCTCCATCTTCTTATCATCTTCCACCAAATCATGGATTCAGATGCAGACATGGAGGATTATGGATTCGAGTACTCCGAGGAAGAACCTGAGGAGCAAGATGTTGGTATTGAGAATCAGTATTACAATTCTAAAGGTTTGGTTGAGACTGATCCAGAGGGTGCACTTAGTGGTTTTGCTGAAGTAGTTAAGATGGAACCAGAGAAAGCAGAATGGGGATTCAAAGCACTTAAACAGACTGTCAAGCTTTATTACCGTTTAGGGAGGTACAAGGAGATGACAGATGCATATAGGGAGATGTTAACCTACATTAAATCTGCAGTGACCCGAAACTATAGTGAAAAATGTATAGACAATATCATGGATTTCGTATCTGGGTCTGCCAGTCAGAACTTCGGTCTTTTACAAGAGTTCTATCAAACCACCTTGAAAGCACTTGAAGAAGCAAAAAATGAGAGGCTGTGGTTCCAGACAAATCTTAAGCTTTGCAAGATCTGGTTTGACATGAGTGAGTATGGTAGAATGAACAAGATTTTGAAGGAACTACACAAATCTTGTCAACGGGCTGATGGGACTGATGATCAAAAGAAAGGAACTCAGTTATTGNAAGTGTATGCAATTGAGATTTCAATGTATACNGAGACGAAAAATACAAAAAGCTCAAGCAACTGTACCAAAAAGCACCTACAATAAAATCAG | |||||||||
gi|124688515|gb|EH783251.1|EH783251 CNSS22480.b1_O04.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSS22480 GAAATCTTGTTGATGCTGCCA EST sequence (targeted fragment marked with yellow): ATCGTTGAGCGTACTAGAGATACGAGCGACTATCTTTGGTATTCCACCAGTGTTGTGATAAACCCGTCTGAATTGCACCGGGGCATCGTTCCAACTCTAACCGTTGAGTCCGAAGGTCATGCTCTACATGTTTACGTCAATGGCCAACTCTCAGGTTCGGTGTATGGAAATGGAGAAAATAAGAATGTTAAGTTCGCAGGGCAGGCCCATGTACATGCCGGAATGAACAAGATTTCGCTGCTTAGTGTGGCTGTCGGGTTACAAAACAATGGGCCACATTTCGAGTTATGGAAGACGGGAGTTTTAGGACCCGTTGTGTTGAATGGACTAGGCCATGGCTCGTGGGACTTATCTCGGCAGAAATGGTCGTACCAGGTCGGTTTGAAAGGCGAATTCAAAAACCTTGCATCTCCGATGGAAGTTTCGTCCGTAGATTGGACAGAATCGTCACTTGTACAACAAAATAGACCCCTTACATGGTACAAGGCTTATTTCAATGCACCAGAAGGGGGTGAGCCTTTGGCAATTGACATGAAAAGAATGGGAAAAGGTCAAGTATGGATCAATGGTGAAAGCATAGGGAGATATTGGACACAACATGCAAAAGGTACTTGTAGTAATGCCTGCAGCTATACCGGTACTTATCGACCCGTCAAGTGTCAAACTCGTTGCGGAAAGCCCACTCAACGATGGTACCATGTCCCTCGATCTTGGTTGAAGCCGACACAAAATTTGATAGTCGTGTTTGAGGAGATAGGTGGCGATGCATCCACGATTTCTCTTATGAGAAGAACGA | |||||||||
gi|124678456|gb|EH773196.1|EH773196 CNSM5655.b1_M22.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSM5655, GAAATCTTGTTGATGCTGCCA EST sequence (targeted fragment marked with yellow): CGGGGAATTGAGATGATACTTCTACAAAGCCTTTATTGAGGAATATATCTCTAAGCTGCTAGAATCTCAATCGTATATGGCTGCAGTTACTCTGCTAGAACAACTCTCTATCTCTCATTCTAGAGAGTCTTTTCTTCATACGATGTTGGAAAGCAGAGAATATCGAGCAGCAGAAAAGTGGGCCACATTTATGGGACGACCAATGCTGTGTGCACTCATCCGGGAATACGTTGATAGGAAGCTTGTAAAGCAGGCTTATGAGCTGATAAAGAAAAACCAACTTCGTGAAGAATTTCCAGAGGTATATCAGATGGGTAAAGAAAGCTCGCTTAAGAAGCTAGCAGAAAAGGGATGCTGGGACATAGCAGAGATGAGGGCGAAATCTGACAGCAAACTTCTTGAATATTTGGTTTATTTGGCAATGGAAGCTGGTTACTCAGAGAAGGTCGATGAACTTTGTGATAGATACTCCCTCAAAGGTTTCATGATGGCCAAAGAAGCTGAGGCAAGCCTTCCACGTATTCGGTATCTACATCGAGATGAATTGGCAATAGATGACATAATTTGGGTTGATGAGTCCGTAGGTCTGTATGAAGCAACATGTCACATTGAGGGAAGCAAAGTCATTGGCCTTGATTGTGAATGGAAGCCTAATTATGTACAGGGCGGTAACAACAAGGTTTCTATCATGCAAATAGCTTCTGAGAAGACGGTCTTCATCATTGACTTGATAAAGTTATCACATGATGCTCCTGCTGCTCTGGACAGCTGCCTAATCCGCATT | |||||||||
gi|124696261|gb|EH790914.1|EH790914 CNSS627.b2_E14.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSS627, mR GAAATCTTGTTGATGCTGCCA EST sequence (targeted fragment marked with yellow): CTTCGGCGGGGTCTCTCATAGGAGCCCCCTTTTACATTCAAGATCACCACAACACCTGAATGGAAGGATGTCTCCGTCACCCATATCTAGCCCACGAACCACTTCAGGTGCATCCACTCCTCTAAATGGTGGGCCTAAGATCCCATTTCATCATGTGAACCAATCTGTTTACCTGCATGAGATCTCAAAACCCACCAACATCCCTTGCGTAAATGGTGCATCTTATCGTGACCCTGTTCCTGATATGTTCCGAGCCAAGCAGTCAGGTGGTCATGGATGCAGCCCTGGTCGACAATTTGGTGGCCTCACTCAAGAACTTCATGGAGGACAGGCGGTCTTAGCTGACTCCGTATCCCATCTACTCTTGAGGGATAAAGTCAACTTCAAACCATCTTTGGATCTAAATCCCTTATAAGGTGCAAATATCATCCTAGTTGCAAAACGGGCTAATAACAGGATGGAAGACGTAAAACGGCTTAAAATCCTTGAGATATGATCTGGCTCGTCAAGAGGTGGTACGGTCCCATAAGGTAGCTGAATACATATATATGCACCATTTGAAGGTGGGTTTTGCATATATGTATAATGTGTCTCACTTTGCTAGCAAGTATATTGGGTTCTGCAGCTTCATTCAAAAGGCAGAGCTATGGTGGTGTAAACAGGATTTCATATCTTTATATCATCAAATAGAAGAGTAGGAATTAGGAGAATAAGTAGAGAATTAGGGGTATTTTTTTTTCTTGTGGGAGGCTGAAACTGCTGTACATAAAATGCAGAATCAAAGTATTGCGTTTGGTGTTTCCTTCACTTGACGCACTTTGTACCGGCAAACTGTATCTATAT | |||||||||
gi|124672737|gb|EH767477.1|EH767477 CNSM13688.b1_O14.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSM13688 GAAATCTTGTTGATGCTGCCA EST sequence (targeted fragment marked with yellow): ATAAGTTTCCAGGTTACGAAAGAAGAGAAACGCCATAGTCATCTTCCAAACCAAACCCTAGACCTCTGATCGCTTCTCTATTCTCCATCTTCTTATCATCTTCCACCAAATCATGGGTTCAGACATGGAGGATTATGGATTCGAGTACTCCGAGGAAGAACCTGAGGAGCAAGATGTTGATATTGAGAATCAGTATTACAATTCTAAAGGTTTGGTTGAGACTGATCCAGAGGGTGCACTTAGTGGTTTTGCTGAAGTAGTTAAGATGGAACCAGAGAAAGCAGAATGGGGATTCAAAGCACTTAAACAGACTGTCAAGCTTTATTACCGTTTAGGGAGGTACAAGGAGATGACAGATGCATATAGGGAGATGTTAACCTACATTAAATCTGCAGTGACCCGAAACTATAGTGAAAAATGTATAAACAATATCATGGATTTCGTATCTGGGTCTGCCAGTCAGAACTTCGGTCTTCTACAAGAGTTCTATCAAACCACCTTGAAAGCACTTGAAGAAGCAAAAAATGAGGGGCTGTGGTTCAAGACAAATCTTAAGCTTTGCAAGATCTGGTTTGACATGGGTGAGTATGGTAGAATGAACAAGATTTTGAAGGAACTACACAAATCTTGTCAACGGGCTGATGGGACTGATGATCAAAAGAAAGGAACTCAGTTATTGGAAGTGTATGCAATTGAGATTCAAATGTATACAGAGACGAAAAATAACAAAAAGCTNCAGCAACTGTACCAAAAAGCACTTACAATAAAATCAGCGATTCCTCAT | |||||||||