| mature miRNA: GAACCGAACCGAACCGAAATT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73876012|gb|DT478750.1|DT478750 WS02523.BR_L05 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02523_L05 5', mRNA sequence GAACCGAACCGAACCGAAATT EST sequence (targeted fragment marked with yellow): GAAACACATAACCAGCTGCGCCTCCATTTGTTTTGCTCTCTGCATCTCTCCTTCTCTAATCTTAAGATTATTAGCCAGCAGCCCCCCCATACAGGCACTAAGGCACACACATAAACAGCTACTGAAAGGAAAGGGAGGACAGACAGTGAGTTTAATAATCCACTCTTTCTATTCGCTATAGCCAGGCTTTCATCTAATACTTCAACTAGGGAGGAGAGGAAAATCAGTTTTTTCGATACGATCTCCCTGTCTCACTGCACCGACATAGAGGGAAACTTCAGAATGGGGCAGTGGGCTTCGCCAAATCCTGATTTTGTTTTCCTTCTCCCGGTCATCGAAAGCTCAAAGCTACTGGTTCTGTTCTGTCATGCTCTATTCTAGTTCTTTCTACTCTCGAGTTACCTTTCAAGCAGACCCAGAAGAAAAAGAGGAAGCCCACAAAGCGATAACAGCTACTTGTTCTGCTTCGTCTTGAAGCTAGAATCAATCCCTAGATTTCATACTTTTTAGGGAGAAAGTTGTGTATTTTGGCTTGTACAGAAACGACATCATTTCATAGATTTTCAAGCTAGCGAACCGAACTGACCGGTTTGGAAAGGAAAAAAACCGAACTGAAACTGGTCGGTTTGAACCGGTTTTCGGTTCGGTTCGATTTAAAAATTTGAAAAAAAATAATTTTAACTTGGTTATAAAAAAAAAAAAAAAAAA | |||||||||
gi|73881094|gb|DT483832.1|DT483832 WS02523.B21_L05 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02523_L05 3', mRNA sequence GAACCGAACCGAACCGAAATT EST sequence (targeted fragment marked with yellow): GAAACACATAACCAGCTGCGCCTCCATTTGTTTTGCTCTCTGCATCTCTCCTTCTCTAATCTTAAGATTATTAGCCAGCAGCCCCCCCATACAGGCACTAAGGCACACACATAAACAGCTACTGAAAGGAAAGGGAGGACAGACAGTGAGTTTAATAATCCACTCTTTCTATTCGCTATAGCCAGGCTTTCATCTAATACTTCAACTAGGGAGGAGAGGAAAATCAGTTTTTTCGATACGATCTCCCTGTCTCACTGCACCGACATAGAGGGAAACTTCAGAATGGGGCAGTGGGCTTCGCCAAATCCTGATTTTGTTTTCCTTCTCCCGGTCATCGAAAGCTCAAAGCTACTGGTTCTGTTCTGTCATGCTCTATTCTAGTTCTTTCTACTCTCGAGTTACCTTTCAAGCAGACCCAGAAGAAAAAGAGGAAGCCCACAAAGCGATAACAGCTACTTGTTCTGCTTCGTCTTGAAGCTAGAATCAATCCCTAGATTTCATACTTTTTAGGGAGAAAGTTGTGTATTTTGGCTTGTACAGAAACGACATCATTTCATAGATTTTCAAGCTAGCGAACCGAACTGACCGGTTTGGAAAGGAAAAAAACCGAACTGAAACTGGTCGGTTTGAACCGGTTTTCGGTTCGGTTCGATTTAAAAATTTGAAAAAAAATAATTTTAACTTAGTATAAAAAAAAAAAAAAAAAA | |||||||||
gi|73894483|gb|DT497221.1|DT497221 WS01125.BR_N14 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01125_N14 5', mRNA sequence GAACCGAACCGAACCGAAATT EST sequence (targeted fragment marked with yellow): TCCCCGAACATTCACCCCTTAGCCGCCGCCCTCCCTTCCCCTCCCTTCTCTGCATATCTCATTCTCTCTCATTTTACTCTTTTTTTTCTCTCGTCCCTCTACTCTCTGTTCTGTTTTGATTTTTCTCCCTTTCCTCTACTATCTGCTCTGATTTGATCTTATGGATTTGGTTCCTTTGGGTTTTCTTCGGATCTTAGTTCTCCTATTGAGTCTGTGGTTGGCTCTACTAACAGCCAAATAGAGGACTATCAGATCCACCAAGAAAACCCCCTCCATTCTATATTCCGTCAAAAAATCTCATCTCTGACGTTAGTCTCCACCAACAGGACTGCTTGCTTACCAAAAGTTGCAGGCATCTCAAATAATTTGTCAAACGCATCTGAGATGACAAATGATGCAGCAGTAGGGTGTTTGGGGAGGGCAAAACAACATTTTGGGACTGGAGTATTGTTTTCTCAAAAGCCACATTAGACCTGGCCAGTGATCCAAAACAGAGGGAGGAATATTACTAGTGTTGGTAGAGGACCATTGGGTTTGAACCGGTTTGAAAGGGAAAAAAACCGAACCGAACCGAACCGAAATTATTTGGTTTGAACTGGTTTTCGGTTCGGTTCGGTTCAAAAAATTAAAAAAATAATAATTCGGTGTGGTTGTTTATTTTGGTTCAAAACCGGACCGAACCGGAAATGCTCAGCACTAGTAAAACTTAAGGAGCTCCTTTGAGACAAAACTAGTTGAGGTTTACAAAACCTGGGACTGTGTGGGAGTGGTAGTCACAGACAAATATTATTGATTTGGACAAAAAAAAAAAAAAA | |||||||||
gi|52380680|gb|CV228826.1|CV228826 WS01911.B21_F16 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01911_F16 3', mRNA sequence GAACCGAACCGAACCGAAATT EST sequence (targeted fragment marked with yellow): CACCTTAGTTAATAGCGGTGAGAGGAACTCTGGAGTCTTTCAAGGATTGGGCAGCGTCATATGCTGCCACAATATGTTTGATGTCTCCATTTACTTGTTTTGAGGACTTCGAATCCCCAGAATGACTTCAACAATTCTTCAAAAGCAGGAGTTCTAAGTTCTTCAATTGATGCAAAGGTTGGCAGATTGTATGGCCTCTTTCTTGGTGTCGAACAAGATGGCTCGTCCACCGCATATTCATCCAGAAGACATTTCCCAGCATTCTCTGTAATTTCAACAATCTTGTGGTAGTGACTGCCCTTCAGTTCCCTCAGATCTCCACAGCAAGGAAAAATCATGGAATTGAGATTTCCACAAGCATCACGGTCAAGATGTAATGAATGTTCAATGGATGAGAGGAGATCATTGTTCCCAATGTCAACATCTTCAACAGCAGCAGATACAGCAGAAGAAAACTGTCTACAAAGGATTTGGTTCGCTTCGGTTCCTCCACTAACAATGGAATCCACAGAATGAACATTGCTTTTTTCTAGGCTGAGCAAGGATTCTTGAGCATTCCTCCACTGTTGTGCGCCCATTTTTGTCTTAT | |||||||||
gi|38576125|gb|CK091800.1|CK091800 F126P61.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F126P61 3', mRNA seque GAACCGAACCGAACCGAAATT EST sequence (targeted fragment marked with yellow): GTTTTGCTCTCTGCATCTCTCCTTCTCTAATCTTAAGATTTTTAGCCAGCAGCCCCCCCATACAGGCATTAAGACACACACATAAACAGCTACTGAAAGGAAAGGGAGGACAGACAGTGAGTTTAATAATCCACTCTTTCTATTCGCTATAGCAAGGCTTTCATCTAATACTTCAACTAGGGAGGAGAGGAAAATCAGTTTTTTCGATACGATCTCCCTGTCTCACTGCACCGACATAGAGGGAAACTTCAAAATGGGGCAGTGGGCTTCGCCAAATCCTGATTTTGTTTTCCTTCTCCCGGTCATCGAAAGCTCAAAGCTACTGGTTCTGTTCTGTCATGCTCTATTCTAGTTCTTTCTACTCTCGAGTTACCTTTCAAGCAGACCCAGAAGAAAAAGAGGAAGCCCACAAAGCGATAGCAGCTACTTGTTCTGCTTCGTCTTGAAGCTAGAATCAATCCCTAGATTTCATACTTTTTAGGGAGAAAGTTGTGTATTTTGGCTTGTACAGAAACGACATCATTTCATAGATTTTCAAGCTAGCGAACCGAACTGACCGGTTTGGAAAGGAAAAAAACCGAACTGAAACTGGTCGGTTTGAACCGGTTTTCGGTTCGGTTCGATTTAAAAATTTGAAAAAAAATAATTTTAACTGGGTTAAAAAAAAAAAAAAAAAAAAAAACTCGAGGGGGGG | |||||||||