miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: GAAGTCAGAGAAGTTTGATGA
species: Raphanus raphanistrum subsp. landra
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|161547469|gb|EY921003.1|EY921003 RR4EF07JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence 

GAAGTCAGAGAAGTTTGATGA
||| ||||||||..|||| .|
CTTAAGTCTCTTTGAACTTTT

EST sequence (targeted fragment marked with yellow):
CTTCAGTATACGGCCCAATATCTTTCCCATCACTTCCTTTGGTAGTTCTGAAGATTTCTGAAGGGTCGGGTTCTCCTGCCGTTACTGCTCTTGGTTCCTTGAAAAGCATTGAACCCAACAAAATAATCTTGAAGAAGATAATATTAACTGGGTATCCGCAGAGAGTATCAAAGATGAAAGCATCAGTGAGATATATGTTCCATAACCCTGAAGACGTGAGATGGTTTAAGCCGGTAGAAGTATTCTCTAAATGTGGTTGTCGTGGTCGCGTGAAGGAGCCGGTTGGTACACACGGGGCAATGAAATGCATATTCAATGGAGTGGTGCAGCAACATGATGTTGTGTGCATGAAGTTGTACAAGCGTGCTTATCCCAAATGGCCCGAGCGTATGTACCCGCAGCTTCTTTGATTTTTATTTATAAACTGAAACTGATGACGATTTTCAAGTTTCTCTGAATTCATATTCGTACTATGATAGCTTGTGAACCTGGTTCAGTGGAATCCTCCAGTTTTTTCATGTATGTGATGATAAAAAAAATAATTTCTGAAAAGAAAAATAATGATATGCTTTTTTTAGTTCCCTTTTTTGAAAAAAAAAAAAAAAAAAAA


gi|167500508|gb|FD982651.1|FD982651 RR4FY87JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence 

GAAGTCAGAGAAGTTTGATGA
|||.|||.||||.|||.| ||
CTTTAGTTTCTTTAAATTTCT

EST sequence (targeted fragment marked with yellow):
TTTGTTTCCACAGAGCCTATCCCACAAGGCTCCCTCATGGACCAGTTTCTGAAAGGAGACGATGCGTTCAAGAAGTCGAGGCTAAAACTGATTGCAAACATCGTCAAAGGGCCCTGGATCGTGAGGAAAGCTGTCGGAGAGCAAGCTATATGCGTCATCGGACGTGCGCTCTCTTGCAAATACGTCTCTGGAGAGAGCTTCGTGGAGGTTGATGTGGATATCGGGTCTTCGATGGTCGCTAGCGCCATTGTCCACCTCGCGTTTGGTTACATCACGACGCTGACTGTTGATCTCGTGTTCCTTATCGAGAGCCAGACCGATGCAGAGCTTCCTGAAAAGCTGTTGGGAGCTGTTAGATTCTCCGAGCTGCAGACTGACTCGGCTAGGTTTATGGAACTGTCTTCCAGCAGCAGTAATGAGCGGTCTAGCTGGTGGAAGTCGATTGGGAATGGATTAACTAATCTGCTTAATCAAGACACAGCCAACACGAACAATAATACATCATCTCCTGGGAGTAACCACAAGGATGAAAATGTGATAAAGACGCAGTAATTGATTTGATTTAATTCTTTAAATTTCTTTGATTTCATTACACAACTAAAACCTTATCATTTCTTATTACATTGCAAATGTATAGATTGTTTTTTTTTTACTAATATGGATTTGATATCCAACAACCATGTGAGAACATATCGAAAAGAATATATCATATACCTTAAATAAAAAAAAAAAAAAA


gi|154261011|gb|EV571982.1|EV571982 RR4AH08JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence 

GAAGTCAGAGAAGTTTGATGA
||| ||||||||..|||| .|
CTTAAGTCTCTTTGAACTTTT

EST sequence (targeted fragment marked with yellow):
CCAAGATGTCGGTTCTGCACTTTAGCGTTAAGAAGTATGATGGTTACGAAGATCCTATTAAAACAAAAGAAGAACTTATGTTTCATGTTGGTTCCCGCCAATTCGTTGCAAGGCCAGTATTCTCAACCGACAATTTCAGCTCAGACAAGCACAAGATGGAACGTTTCCTGCATCCAGGGCGTTTCTCATTGGCTTCAGTATACGGCCCAATATCTTTCCCATCACTTCCTTTGGTAGTTCTGAAGATTTCTGAAGGGTCGGGTTCTCCTGCCGTTACTGCTCTTGGTTCCTTGAAAAGCATTGAACCCAACAAAATAATCTTGAAGAAGATAATATTAACTGGGTATCCGCAGAGAGTATCAAAGATGAAAGCATCAGTGAGATATATGTTCCATAACCCTGAAGACGTGAGATGGTTTAAGCCGGTAGAAGTATTCTCTAAATGTGGTTGTCGTGGTCGCGTGAAGGAGCCGGTTGGTACACACGGGGCAATGAAATGCATATTCAATGGAGTGGTGCAGCAACATGATGTTGTGTGCATGAAGTTGTACAAGCGTGCTTATCCCAAATGGCCCGAGCGTATGTACCCGCAGCTTCTCTGATTCTTATTTATAAACTGAAGCTGATGACGATTTTCAAGTTTCTCTGAATTCATATTCGTACTATGATAGCTTGTGAACCTGGTTCAGTGGAATCCTCCAGTTTTTTCATGTATGTGATGATAAAAAAAATAATTTCTGAAAAGAAAAATAATGATATGCC


gi|166123173|gb|FD554696.1|FD554696 RR4FD33JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence 

GAAGTCAGAGAAGTTTGATGA
||| ||||||||..|||| .|
CTTAAGTCTCTTTGAACTTTT

EST sequence (targeted fragment marked with yellow):
CCTATTAAAACAAAAGAAGAACTTATGTTTCATGTTGGTTTCCGCCAATTCGTTGCAAGGCCAATATTCTCAACCGACAATTTCAGCTCAGACAAGCACAAGATGGAACGTTTCCTGCATCCAGGGCGTTTCTCATTGGCTTCAGTATACGGCCCAATATCTTTCCCATCACTTCCTTTGGTAGTTCTGAAGATTTCTGAAGGGTCGGGTTCTCCTGCCGTTACTGCTCTTGGTTCCTTGAAAAGCATTGAACCCAACAAAATAATCTTGAAGAAGATAATATTAACTGGGTATCCGCAGAGAGTATCAAAGATGAAAGCATCAGTGAGATATATGTTCCATAACCCTGAAGACGTGAGATGGTTTAAGCCGGTAGAAGTATTCTCTAAATGTGGTTGTCGTGGTCGCGTGAAGGAGCCGGTTGGTACACACGGGGCAATGAAATGCATATTCAATGGAGTGGTGCAGCAACATGATGTTGTGTGCATGAAGTTGTACAAGCGTGCTTATCCCAAATGGCCCAAGCGTATGTACCCGCAGCTTCTCTGATTCTTATTTATAAACTGAAACTGATGACGATTTTCAAGTTTCTCTGAATTCATATTCGTACTATGATAGCTTGTGAACCTGGTTCAGTGGAATCCTCCAGTTTTTTCATGTATGTGATGACAAAAAAAATAATTTCTGAAAAGAAAAATAATGATATGCAAAAAAAAAAAAAAAAAAA